Wall clock time and date at job start Fri Apr 10 2020 14:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47064 * 269.99480 * 3 2 1 5 5 H 1.48499 * 109.47018 * 29.99606 * 3 2 1 6 6 H 1.48502 * 109.46989 * 149.99781 * 3 2 1 7 7 C 1.37882 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00024 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99931 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.46781 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.46962 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54086 * 283.87706 * 11 10 9 13 13 O 1.42100 * 110.53840 * 60.62310 * 11 10 9 14 14 N 1.65594 * 104.45112 * 172.24869 * 11 10 9 15 15 C 1.46502 * 119.99965 * 66.07464 * 14 11 10 16 16 C 1.50702 * 110.45830 * 296.93512 * 15 14 11 17 17 O 1.20823 * 120.00025 * 141.01042 * 16 15 14 18 18 O 1.34227 * 120.00067 * 321.01932 * 16 15 14 19 19 C 1.54508 * 110.50989 * 59.54428 * 15 14 11 20 20 C 1.54472 * 104.06428 * 118.64549 * 19 15 14 21 21 O 1.44426 * 104.80535 * 336.02114 * 20 19 15 22 22 C 1.44786 * 105.29286 * 40.54598 * 21 20 19 23 23 H 0.97000 * 120.00270 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47042 * 59.99367 * 9 7 2 25 25 H 1.08998 * 109.46604 * 299.99814 * 9 7 2 26 26 H 1.08998 * 109.47318 * 299.99277 * 10 9 7 27 27 H 1.09004 * 109.47768 * 60.00004 * 10 9 7 28 28 H 0.97003 * 120.00023 * 246.07724 * 14 11 10 29 29 H 0.96694 * 117.00181 * 179.97438 * 18 16 15 30 30 H 1.09007 * 110.51079 * 237.28856 * 19 15 14 31 31 H 1.08999 * 110.51624 * 359.97438 * 19 15 14 32 32 H 1.09007 * 110.37334 * 94.85257 * 20 19 15 33 33 H 1.09004 * 110.37375 * 217.07545 * 20 19 15 34 34 H 1.09001 * 110.48050 * 200.67776 * 22 21 20 35 35 H 1.08997 * 110.42798 * 78.22805 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 16 5.8355 -2.6366 0.0009 12 8 6.3341 -2.3174 -1.2909 13 8 6.3341 -1.9839 1.1605 14 7 6.2487 -4.2255 0.2171 15 6 5.9332 -5.2119 -0.8191 16 6 4.4417 -5.3223 -1.0047 17 8 3.9790 -5.4555 -2.1128 18 8 3.6273 -5.2723 0.0611 19 6 6.6182 -4.8351 -2.1518 20 6 7.5579 -6.0266 -2.4409 21 8 7.8096 -6.6201 -1.1485 22 6 6.5369 -6.5875 -0.4589 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8910 25 1 3.8751 -0.6805 -0.8889 26 1 3.6579 -3.1505 0.8908 27 1 3.6585 -3.1503 -0.8892 28 1 6.6996 -4.5032 1.0298 29 1 2.6781 -5.3469 -0.1078 30 1 5.8783 -4.7309 -2.9455 31 1 7.1913 -3.9147 -2.0399 32 1 7.0689 -6.7445 -3.0994 33 1 8.4886 -5.6763 -2.8872 34 1 6.6846 -6.6667 0.6182 35 1 5.8909 -7.3903 -0.8143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370313655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:00 Heat of formation + Delta-G solvation = -195.816126 kcal Electronic energy + Delta-G solvation = -23116.431372 eV Core-core repulsion = 19435.417376 eV Total energy + Delta-G solvation = -3681.013996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.23733 -39.16419 -36.90951 -36.37415 -35.78329 -35.12243 -34.00741 -31.54779 -30.78880 -29.09543 -26.10977 -24.63537 -23.16728 -21.47816 -20.67919 -19.40226 -18.41727 -17.82843 -17.46806 -17.23753 -16.70433 -16.23091 -15.75542 -15.50701 -15.25367 -15.09091 -14.35442 -14.09411 -13.67891 -13.36773 -13.03715 -12.86535 -12.72796 -12.23518 -12.00037 -11.88264 -11.82896 -11.72992 -11.56240 -11.32789 -11.19749 -11.14707 -10.83396 -10.50127 -10.24872 -10.14639 -9.99450 -9.61938 -9.33072 -8.70507 -6.21052 -4.22568 0.46245 1.71475 2.56227 2.71748 3.23371 3.31009 3.34907 3.53204 3.84832 4.09287 4.23627 4.31975 4.34567 4.70247 4.77373 4.86043 4.97467 5.10644 5.17371 5.33035 5.36957 5.47075 5.52357 5.71705 6.04654 6.18681 6.29235 6.31077 6.72641 6.74266 6.87902 7.49169 7.60635 8.30980 8.78610 9.38518 10.91202 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025526 B = 0.005451 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.678770 B = 5135.314851 C = 5637.769835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.868 3.132 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.519 4.519 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.582 4.582 11 S 2.581 3.419 12 O -0.960 6.960 13 O -0.955 6.955 14 N -1.101 6.101 15 C 0.159 3.841 16 C 0.462 3.538 17 O -0.488 6.488 18 O -0.502 6.502 19 C -0.180 4.180 20 C 0.047 3.953 21 O -0.363 6.363 22 C 0.064 3.936 23 H 0.267 0.733 24 H 0.036 0.964 25 H 0.025 0.975 26 H 0.140 0.860 27 H 0.116 0.884 28 H 0.423 0.577 29 H 0.421 0.579 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.525 -14.171 -0.925 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.694 3.306 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.558 4.558 8 H 0.096 0.904 9 C -0.045 4.045 10 C -0.715 4.715 11 S 2.679 3.321 12 O -0.949 6.949 13 O -0.945 6.945 14 N -0.859 5.859 15 C 0.067 3.933 16 C 0.301 3.699 17 O -0.373 6.373 18 O -0.315 6.315 19 C -0.218 4.218 20 C -0.029 4.029 21 O -0.281 6.281 22 C -0.015 4.015 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.158 0.842 27 H 0.134 0.866 28 H 0.258 0.742 29 H 0.282 0.718 30 H 0.127 0.873 31 H 0.147 0.853 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.418 -13.385 -1.342 19.000 hybrid contribution -1.108 0.429 0.191 1.203 sum 12.310 -12.956 -1.150 17.909 Atomic orbital electron populations 1.69871 1.06199 1.27321 1.49841 1.24970 0.94814 0.99158 0.94073 0.86943 0.80765 0.83727 0.79150 1.19680 1.20681 1.18549 1.20789 0.87627 0.94875 1.52470 0.90447 1.19419 1.00037 0.87096 0.97903 1.30472 1.20594 1.09468 1.10958 1.05991 0.79399 0.72153 0.74548 1.93515 1.78367 1.81818 1.41246 1.93585 1.79112 1.71684 1.50149 1.55785 1.75328 1.26509 1.28253 1.21303 0.87127 0.93644 0.91252 1.23540 0.90304 0.73349 0.82737 1.90774 1.76811 1.43735 1.26028 1.84568 1.24383 1.84014 1.38527 1.23992 1.00921 1.02394 0.94497 1.23533 1.00233 0.93328 0.85828 1.89235 1.28553 1.82192 1.28131 1.23599 0.86100 0.91981 0.99825 0.92329 0.94550 0.95684 0.84212 0.86604 0.74186 0.71807 0.87266 0.85253 0.91462 0.87926 0.86703 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.52 -14.12 9.66 -34.44 -0.33 -14.45 16 8 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.12 4.05 -27.88 -0.11 -0.23 16 10 C -0.58 -10.46 4.06 37.15 0.15 -10.31 16 11 S 2.58 42.51 5.41 -107.50 -0.58 41.93 16 12 O -0.96 -17.50 14.68 -57.54 -0.84 -18.35 16 13 O -0.95 -18.21 18.08 -57.54 -1.04 -19.25 16 14 N -1.10 -13.13 5.32 0.88 0.00 -13.13 16 15 C 0.16 1.83 1.10 -131.40 -0.14 1.68 16 16 C 0.46 5.76 4.63 36.01 0.17 5.92 16 17 O -0.49 -7.27 16.23 -18.75 -0.30 -7.57 16 18 O -0.50 -5.32 10.44 -39.25 -0.41 -5.73 16 19 C -0.18 -2.17 5.52 -25.17 -0.14 -2.31 16 20 C 0.05 0.45 7.63 37.93 0.29 0.74 16 21 O -0.36 -3.79 11.66 -35.23 -0.41 -4.20 16 22 C 0.06 0.56 6.87 37.93 0.26 0.82 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.04 0.84 7.20 -51.93 -0.37 0.47 16 25 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 26 H 0.14 2.23 7.12 -51.93 -0.37 1.86 16 27 H 0.12 2.01 6.07 -51.92 -0.32 1.69 16 28 H 0.42 3.94 8.37 -34.47 -0.29 3.65 16 29 H 0.42 3.35 9.10 45.56 0.41 3.77 16 30 H 0.11 1.39 6.68 -51.92 -0.35 1.04 16 31 H 0.13 1.75 5.49 -51.93 -0.29 1.47 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.12 0.77 7.76 -51.93 -0.40 0.37 16 35 H 0.08 0.60 7.86 -51.93 -0.41 0.20 16 LS Contribution 298.81 15.07 4.50 4.50 Total: -1.00 -35.26 298.81 -6.14 -41.39 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -3.20 Total: 5.87 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 0.04 Total: -16.16 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.78 Total: -38.97 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -3.01 Total: -55.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: 42.51 SS G_CDS: -0.58 Total: 41.93 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.26 -6.14 -41.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370313655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.422 kcal (2) G-P(sol) polarization free energy of solvation -35.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds