Wall clock time and date at job start Fri Apr 10 2020 14:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48499 * 109.47064 * 269.99480 * 3 2 1 5 5 H 1.48499 * 109.47018 * 29.99606 * 3 2 1 6 6 H 1.48502 * 109.46989 * 149.99781 * 3 2 1 7 7 C 1.37882 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00024 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99931 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.46781 * 180.02562 * 9 7 2 11 11 S 1.81405 * 109.46962 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54086 * 283.87706 * 11 10 9 13 13 O 1.42100 * 110.53840 * 60.62310 * 11 10 9 14 14 N 1.65594 * 104.45112 * 172.24869 * 11 10 9 15 15 C 1.46502 * 119.99965 * 66.07464 * 14 11 10 16 16 C 1.50702 * 110.45830 * 296.93512 * 15 14 11 17 17 O 1.20823 * 120.00025 * 141.01042 * 16 15 14 18 18 O 1.34227 * 120.00067 * 321.01932 * 16 15 14 19 19 C 1.54508 * 110.50989 * 59.54428 * 15 14 11 20 20 C 1.54472 * 104.06428 * 118.64549 * 19 15 14 21 21 O 1.44426 * 104.80535 * 336.02114 * 20 19 15 22 22 C 1.44786 * 105.29286 * 40.54598 * 21 20 19 23 23 H 0.97000 * 120.00270 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47042 * 59.99367 * 9 7 2 25 25 H 1.08998 * 109.46604 * 299.99814 * 9 7 2 26 26 H 1.08998 * 109.47318 * 299.99277 * 10 9 7 27 27 H 1.09004 * 109.47768 * 60.00004 * 10 9 7 28 28 H 0.97003 * 120.00023 * 246.07724 * 14 11 10 29 29 H 0.96694 * 117.00181 * 179.97438 * 18 16 15 30 30 H 1.09007 * 110.51079 * 237.28856 * 19 15 14 31 31 H 1.08999 * 110.51624 * 359.97438 * 19 15 14 32 32 H 1.09007 * 110.37334 * 94.85257 * 20 19 15 33 33 H 1.09004 * 110.37375 * 217.07545 * 20 19 15 34 34 H 1.09001 * 110.48050 * 200.67776 * 22 21 20 35 35 H 1.08997 * 110.42798 * 78.22805 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 16 5.8355 -2.6366 0.0009 12 8 6.3341 -2.3174 -1.2909 13 8 6.3341 -1.9839 1.1605 14 7 6.2487 -4.2255 0.2171 15 6 5.9332 -5.2119 -0.8191 16 6 4.4417 -5.3223 -1.0047 17 8 3.9790 -5.4555 -2.1128 18 8 3.6273 -5.2723 0.0611 19 6 6.6182 -4.8351 -2.1518 20 6 7.5579 -6.0266 -2.4409 21 8 7.8096 -6.6201 -1.1485 22 6 6.5369 -6.5875 -0.4589 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8910 25 1 3.8751 -0.6805 -0.8889 26 1 3.6579 -3.1505 0.8908 27 1 3.6585 -3.1503 -0.8892 28 1 6.6996 -4.5032 1.0298 29 1 2.6781 -5.3469 -0.1078 30 1 5.8783 -4.7309 -2.9455 31 1 7.1913 -3.9147 -2.0399 32 1 7.0689 -6.7445 -3.0994 33 1 8.4886 -5.6763 -2.8872 34 1 6.6846 -6.6667 0.6182 35 1 5.8909 -7.3903 -0.8143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370313655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:59 Heat of formation + Delta-G solvation = -226.497978 kcal Electronic energy + Delta-G solvation = -23117.761836 eV Core-core repulsion = 19435.417376 eV Total energy + Delta-G solvation = -3682.344461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.17281 -40.01927 -38.31305 -37.35172 -37.19174 -36.10669 -35.89878 -33.50436 -31.68605 -29.92534 -27.96921 -25.53620 -23.97833 -23.26550 -21.70490 -20.59501 -19.60042 -19.21977 -18.75438 -18.46468 -17.78004 -17.18609 -17.03658 -16.74210 -16.40587 -16.19261 -16.06448 -15.38860 -14.93354 -14.80523 -14.29064 -13.96556 -13.81732 -13.74365 -13.32285 -13.25002 -13.18125 -13.10644 -12.90554 -12.59106 -12.44539 -12.29681 -12.14508 -11.96075 -11.84658 -11.71289 -11.41829 -10.89775 -10.85110 -10.71736 -8.37212 -6.42506 -0.89153 0.73043 1.30834 1.33335 1.42717 1.53874 1.66452 2.28651 2.56124 2.80280 2.97058 3.01856 3.17412 3.47338 3.67589 3.83878 3.98101 4.00491 4.10175 4.19922 4.51013 4.52528 4.60488 4.78669 4.82866 5.02198 5.04217 5.11003 5.39322 5.45314 5.57152 5.88895 6.15567 6.62787 6.71834 7.21786 8.78036 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025526 B = 0.005451 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.678770 B = 5135.314851 C = 5637.769835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.015 3.985 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.248 1.248 7 C -0.523 4.523 8 H 0.053 0.947 9 C -0.014 4.014 10 C -0.588 4.588 11 S 2.610 3.390 12 O -0.976 6.976 13 O -0.978 6.978 14 N -1.081 6.081 15 C 0.153 3.847 16 C 0.465 3.535 17 O -0.517 6.517 18 O -0.497 6.497 19 C -0.188 4.188 20 C 0.051 3.949 21 O -0.372 6.372 22 C 0.066 3.934 23 H 0.269 0.731 24 H 0.038 0.962 25 H 0.026 0.974 26 H 0.157 0.843 27 H 0.119 0.881 28 H 0.438 0.562 29 H 0.432 0.568 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.141 0.859 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.331 -15.060 -0.457 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.183 4.183 3 Si 0.743 3.257 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.171 1.171 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.054 4.054 10 C -0.720 4.720 11 S 2.706 3.294 12 O -0.966 6.966 13 O -0.968 6.968 14 N -0.844 5.844 15 C 0.061 3.939 16 C 0.304 3.696 17 O -0.405 6.405 18 O -0.311 6.311 19 C -0.226 4.226 20 C -0.026 4.026 21 O -0.291 6.291 22 C -0.012 4.012 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.175 0.825 27 H 0.137 0.863 28 H 0.277 0.723 29 H 0.295 0.705 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.159 0.841 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.216 -14.277 -0.846 20.882 hybrid contribution -1.698 0.585 0.041 1.797 sum 13.518 -13.691 -0.805 19.257 Atomic orbital electron populations 1.69994 1.07821 1.28340 1.51688 1.25822 0.95584 1.02862 0.94055 0.86092 0.80112 0.79710 0.79759 1.18822 1.19900 1.17119 1.21126 0.89971 0.93948 1.51199 0.92851 1.19366 0.97490 0.90630 0.97871 1.30485 1.22976 1.06433 1.12087 1.04919 0.77953 0.72917 0.73587 1.93509 1.78059 1.82834 1.42180 1.93552 1.79024 1.73220 1.51027 1.55296 1.74758 1.25078 1.29271 1.21508 0.86668 0.94913 0.90801 1.23724 0.90799 0.72563 0.82498 1.90770 1.77345 1.45231 1.27119 1.84536 1.25312 1.83449 1.37799 1.23994 1.01059 1.02995 0.94589 1.23603 1.00471 0.92577 0.85933 1.89228 1.29276 1.82116 1.28463 1.23808 0.85668 0.90367 1.01375 0.92156 0.94393 0.95611 0.82471 0.86302 0.72268 0.70494 0.88424 0.86821 0.90002 0.86542 0.84093 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.86 13.96 21.45 0.30 -56.56 16 2 C 0.02 0.88 5.47 84.66 0.46 1.34 16 3 Si 0.92 43.23 27.47 68.60 1.88 45.11 16 4 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 7 C -0.52 -28.78 9.66 25.60 0.25 -28.53 16 8 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 9 C -0.01 -0.66 4.05 29.85 0.12 -0.54 16 10 C -0.59 -20.59 4.06 71.98 0.29 -20.30 16 11 S 2.61 81.92 5.41 -56.49 -0.31 81.62 16 12 O -0.98 -34.55 14.68 -127.65 -1.87 -36.42 16 13 O -0.98 -35.54 18.08 -127.65 -2.31 -37.85 16 14 N -1.08 -23.25 5.32 -151.14 -0.80 -24.06 16 15 C 0.15 3.19 1.10 3.87 0.00 3.19 16 16 C 0.46 10.85 4.63 71.24 0.33 11.18 16 17 O -0.52 -15.03 16.23 21.97 0.36 -14.67 16 18 O -0.50 -9.67 10.44 -51.39 -0.54 -10.20 16 19 C -0.19 -4.27 5.52 31.61 0.17 -4.10 16 20 C 0.05 0.85 7.63 72.48 0.55 1.40 16 21 O -0.37 -6.66 11.66 -148.98 -1.74 -8.40 16 22 C 0.07 0.96 6.87 72.48 0.50 1.46 16 23 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 24 H 0.04 1.72 7.20 -2.39 -0.02 1.70 16 25 H 0.03 1.17 7.57 -2.39 -0.02 1.15 16 26 H 0.16 4.82 7.12 -2.39 -0.02 4.80 16 27 H 0.12 4.06 6.07 -2.39 -0.01 4.05 16 28 H 0.44 6.81 8.37 -96.75 -0.81 6.00 16 29 H 0.43 6.38 9.10 -74.06 -0.67 5.71 16 30 H 0.10 2.44 6.68 -2.38 -0.02 2.43 16 31 H 0.11 2.97 5.49 -2.39 -0.01 2.95 16 32 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.14 1.30 7.76 -2.39 -0.02 1.28 16 35 H 0.10 1.13 7.86 -2.39 -0.02 1.11 16 Total: -1.00 -75.48 298.81 -2.73 -78.21 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -0.39 Total: 18.12 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 2.68 Total: -34.89 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -0.51 Total: -80.62 kcal Atomic # 8 Polarization: -101.45 SS G_CDS: -6.10 Total: -107.55 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.88 Total: 45.11 kcal Atomic # 16 Polarization: 81.92 SS G_CDS: -0.31 Total: 81.62 kcal Total: -75.48 -2.73 -78.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370313655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.290 kcal (2) G-P(sol) polarization free energy of solvation -75.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds