Wall clock time and date at job start Fri Apr 10 2020 14:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00182 * 2 1 4 4 H 1.48498 * 109.47199 * 240.00362 * 3 2 1 5 5 H 1.48495 * 109.46872 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47200 * 120.00263 * 3 2 1 7 7 C 1.37880 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00010 * 186.18542 * 7 2 1 9 9 C 1.50701 * 119.99757 * 6.46511 * 7 2 1 10 10 C 1.53000 * 115.54617 * 274.91599 * 9 7 2 11 11 S 1.81401 * 109.46972 * 294.69237 * 10 9 7 12 12 O 1.42100 * 110.54541 * 292.81058 * 11 10 9 13 13 O 1.42100 * 110.54330 * 69.56630 * 11 10 9 14 14 N 1.65606 * 104.44715 * 181.18831 * 11 10 9 15 15 C 1.46500 * 119.99888 * 65.00353 * 14 11 10 16 16 H 1.08996 * 109.47041 * 334.99880 * 15 14 11 17 17 C 1.53000 * 109.46851 * 214.99715 * 15 14 11 18 18 O 1.42902 * 109.47100 * 294.99824 * 17 15 14 19 19 C 1.50703 * 109.47059 * 94.99807 * 15 14 11 20 20 O 1.20822 * 120.00432 * 359.97438 * 19 15 14 21 21 O 1.34227 * 119.99921 * 179.97438 * 19 15 14 22 22 C 1.53001 * 117.49971 * 129.24745 * 9 7 2 23 23 C 1.53000 * 117.49988 * 60.58369 * 9 7 2 24 24 H 0.97003 * 120.00001 * 5.06855 * 1 2 3 25 25 H 1.08994 * 109.47262 * 54.69366 * 10 9 7 26 26 H 1.09006 * 109.46610 * 174.69664 * 10 9 7 27 27 H 0.97003 * 119.99820 * 244.99635 * 14 11 10 28 28 H 1.08995 * 109.47033 * 55.00433 * 17 15 14 29 29 H 1.09003 * 109.46936 * 174.99919 * 17 15 14 30 30 H 0.96703 * 113.99677 * 180.02562 * 18 17 15 31 31 H 0.96698 * 117.00370 * 180.02562 * 21 19 15 32 32 H 1.08997 * 117.49914 * 359.97438 * 22 9 7 33 33 H 1.09000 * 117.49790 * 145.02260 * 22 9 7 34 34 H 1.09007 * 117.49664 * 214.97999 * 23 9 7 35 35 H 1.08995 * 117.49987 * 359.97389 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1968 0.1002 9 6 1.2582 -2.4949 -0.1481 10 6 0.6952 -3.0832 1.1473 11 16 2.0628 -3.5475 2.2449 12 8 2.7983 -4.6315 1.6942 13 8 2.7227 -2.3892 2.7368 14 7 1.3217 -4.1924 3.5782 15 6 0.5499 -5.4319 3.4594 16 1 0.1990 -5.5446 2.4337 17 6 -0.6508 -5.3777 4.4062 18 8 -0.1900 -5.3473 5.7586 19 6 1.4238 -6.6046 3.8230 20 8 2.5735 -6.4237 4.1476 21 8 0.9249 -7.8502 3.7864 22 6 1.7521 -3.4758 -1.2134 23 6 0.4482 -2.7033 -1.4292 24 1 -0.4850 0.8368 -0.0742 25 1 0.0688 -2.3406 1.6414 26 1 0.0989 -3.9660 0.9163 27 1 1.3989 -3.7495 4.4377 28 1 -1.2349 -4.4806 4.2011 29 1 -1.2734 -6.2593 4.2542 30 1 -0.8992 -5.3127 6.4150 31 1 1.5234 -8.5702 4.0284 32 1 2.6165 -3.1801 -1.8078 33 1 1.6754 -4.5403 -0.9916 34 1 -0.4856 -3.2600 -1.3493 35 1 0.4547 -1.8994 -2.1652 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568001627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:06 Heat of formation + Delta-G solvation = -183.259807 kcal Electronic energy + Delta-G solvation = -22731.121147 eV Core-core repulsion = 19050.651634 eV Total energy + Delta-G solvation = -3680.469513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28942 -37.47232 -36.80822 -36.30585 -36.04695 -35.10752 -34.57010 -32.05833 -29.20633 -28.26264 -25.48230 -24.61299 -21.33414 -21.23198 -19.92879 -18.85987 -18.19319 -17.67712 -17.02121 -16.92172 -16.37112 -15.90038 -15.45000 -15.00444 -14.80788 -14.56258 -14.26322 -13.85510 -13.45940 -13.19908 -12.88065 -12.24555 -11.96863 -11.85887 -11.46011 -11.30124 -11.25589 -11.16677 -11.05831 -10.91106 -10.87042 -10.61656 -10.49227 -10.29666 -10.14516 -9.80694 -9.48716 -8.98943 -8.56276 -8.15645 -6.16645 -4.26510 0.95106 2.31705 2.89565 3.30876 3.32983 3.35083 3.42721 3.80072 4.37514 4.47678 4.53298 4.81590 4.91959 5.00302 5.06430 5.12408 5.17423 5.41594 5.60288 5.71139 5.96553 6.18882 6.31560 6.54184 6.54632 6.67586 6.93608 7.12631 7.19074 7.30187 7.35421 7.79158 7.96645 8.16711 8.79935 9.45325 10.91749 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.005327 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.064251 B = 5254.925512 C = 5467.688998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.081 3.919 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.512 4.512 8 H 0.069 0.931 9 C 0.041 3.959 10 C -0.555 4.555 11 S 2.599 3.401 12 O -0.965 6.965 13 O -0.938 6.938 14 N -1.105 6.105 15 C 0.172 3.828 16 H 0.131 0.869 17 C 0.074 3.926 18 O -0.569 6.569 19 C 0.468 3.532 20 O -0.486 6.486 21 O -0.521 6.521 22 C -0.210 4.210 23 C -0.138 4.138 24 H 0.263 0.737 25 H 0.138 0.862 26 H 0.096 0.904 27 H 0.423 0.577 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.386 0.614 31 H 0.408 0.592 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 -12.028 7.529 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.124 4.124 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.549 4.549 8 H 0.087 0.913 9 C 0.039 3.961 10 C -0.688 4.688 11 S 2.696 3.304 12 O -0.955 6.955 13 O -0.928 6.928 14 N -0.861 5.861 15 C 0.060 3.940 16 H 0.149 0.851 17 C -0.005 4.005 18 O -0.375 6.375 19 C 0.306 3.694 20 O -0.371 6.371 21 O -0.333 6.333 22 C -0.248 4.248 23 C -0.177 4.177 24 H 0.073 0.927 25 H 0.156 0.844 26 H 0.115 0.885 27 H 0.257 0.743 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.234 0.766 31 H 0.267 0.733 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.459 -11.556 7.047 14.595 hybrid contribution -0.510 0.617 0.604 1.003 sum -5.969 -10.939 7.651 14.623 Atomic orbital electron populations 1.69990 1.05995 1.27385 1.47804 1.24930 0.94811 0.99230 0.93396 0.86665 0.79933 0.82404 0.79338 1.19934 1.21141 1.19363 1.20516 0.93370 0.88594 1.52433 0.91301 1.18287 0.99390 0.94428 0.84008 1.30054 1.16710 1.08508 1.13536 1.05571 0.76812 0.73937 0.74096 1.93531 1.68489 1.54548 1.78902 1.93575 1.71474 1.49833 1.77956 1.56011 1.70082 1.31767 1.28205 1.20215 0.89976 0.82120 1.01659 0.85117 1.22424 0.93527 1.02442 0.82144 1.86504 1.37835 1.97682 1.15450 1.23794 0.87554 0.83848 0.74224 1.90724 1.18816 1.85405 1.42107 1.84470 1.49040 1.17416 1.82411 1.23235 0.99083 0.96004 1.06439 1.22549 0.92237 1.01007 1.01952 0.92716 0.84408 0.88504 0.74251 0.90652 0.90891 0.76607 0.73331 0.89419 0.90629 0.91473 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.64 12.93 55.43 0.72 -22.92 16 2 C 0.08 2.19 5.39 -17.82 -0.10 2.09 16 3 Si 0.89 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.89 7.97 -34.44 -0.27 -14.17 16 8 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 9 C 0.04 0.98 1.33 -155.66 -0.21 0.77 16 10 C -0.56 -11.06 5.83 37.16 0.22 -10.84 16 11 S 2.60 53.24 5.18 -107.50 -0.56 52.69 16 12 O -0.96 -21.78 17.77 -57.54 -1.02 -22.80 16 13 O -0.94 -23.00 17.48 -57.54 -1.01 -24.00 16 14 N -1.10 -17.44 4.84 -5.88 -0.03 -17.46 16 15 C 0.17 2.18 2.99 -69.08 -0.21 1.98 16 16 H 0.13 1.35 7.13 -51.93 -0.37 0.98 16 17 C 0.07 0.64 6.77 37.16 0.25 0.90 16 18 O -0.57 -5.36 12.85 -35.23 -0.45 -5.82 16 19 C 0.47 6.84 7.17 36.01 0.26 7.09 16 20 O -0.49 -9.17 17.19 -18.75 -0.32 -9.50 16 21 O -0.52 -5.48 13.35 -39.25 -0.52 -6.01 16 22 C -0.21 -4.50 9.96 -26.69 -0.27 -4.77 16 23 C -0.14 -3.04 9.44 -26.69 -0.25 -3.29 16 24 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 25 H 0.14 2.81 8.14 -51.93 -0.42 2.39 16 26 H 0.10 1.52 7.36 -51.92 -0.38 1.14 16 27 H 0.42 6.31 8.54 -34.48 -0.29 6.01 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.39 1.69 9.12 45.56 0.42 2.10 16 31 H 0.41 2.72 9.10 45.56 0.41 3.14 16 32 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 323.69 15.07 4.88 4.88 Total: -1.00 -37.85 323.69 -6.64 -44.49 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -2.72 Total: 10.45 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -0.58 Total: -20.24 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.69 Total: -40.38 kcal Atomic # 8 Polarization: -64.80 SS G_CDS: -3.33 Total: -68.13 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 53.24 SS G_CDS: -0.56 Total: 52.69 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.85 -6.64 -44.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568001627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.773 kcal (2) G-P(sol) polarization free energy of solvation -37.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds