Wall clock time and date at job start Fri Apr 10 2020 14:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00182 * 2 1 4 4 H 1.48498 * 109.47199 * 240.00362 * 3 2 1 5 5 H 1.48495 * 109.46872 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47200 * 120.00263 * 3 2 1 7 7 C 1.37880 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00010 * 186.18542 * 7 2 1 9 9 C 1.50701 * 119.99757 * 6.46511 * 7 2 1 10 10 C 1.53000 * 115.54617 * 274.91599 * 9 7 2 11 11 S 1.81401 * 109.46972 * 294.69237 * 10 9 7 12 12 O 1.42100 * 110.54541 * 292.81058 * 11 10 9 13 13 O 1.42100 * 110.54330 * 69.56630 * 11 10 9 14 14 N 1.65606 * 104.44715 * 181.18831 * 11 10 9 15 15 C 1.46500 * 119.99888 * 65.00353 * 14 11 10 16 16 H 1.08996 * 109.47041 * 334.99880 * 15 14 11 17 17 C 1.53000 * 109.46851 * 214.99715 * 15 14 11 18 18 O 1.42902 * 109.47100 * 294.99824 * 17 15 14 19 19 C 1.50703 * 109.47059 * 94.99807 * 15 14 11 20 20 O 1.20822 * 120.00432 * 359.97438 * 19 15 14 21 21 O 1.34227 * 119.99921 * 179.97438 * 19 15 14 22 22 C 1.53001 * 117.49971 * 129.24745 * 9 7 2 23 23 C 1.53000 * 117.49988 * 60.58369 * 9 7 2 24 24 H 0.97003 * 120.00001 * 5.06855 * 1 2 3 25 25 H 1.08994 * 109.47262 * 54.69366 * 10 9 7 26 26 H 1.09006 * 109.46610 * 174.69664 * 10 9 7 27 27 H 0.97003 * 119.99820 * 244.99635 * 14 11 10 28 28 H 1.08995 * 109.47033 * 55.00433 * 17 15 14 29 29 H 1.09003 * 109.46936 * 174.99919 * 17 15 14 30 30 H 0.96703 * 113.99677 * 180.02562 * 18 17 15 31 31 H 0.96698 * 117.00370 * 180.02562 * 21 19 15 32 32 H 1.08997 * 117.49914 * 359.97438 * 22 9 7 33 33 H 1.09000 * 117.49790 * 145.02260 * 22 9 7 34 34 H 1.09007 * 117.49664 * 214.97999 * 23 9 7 35 35 H 1.08995 * 117.49987 * 359.97389 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0798 -1.1968 0.1002 9 6 1.2582 -2.4949 -0.1481 10 6 0.6952 -3.0832 1.1473 11 16 2.0628 -3.5475 2.2449 12 8 2.7983 -4.6315 1.6942 13 8 2.7227 -2.3892 2.7368 14 7 1.3217 -4.1924 3.5782 15 6 0.5499 -5.4319 3.4594 16 1 0.1990 -5.5446 2.4337 17 6 -0.6508 -5.3777 4.4062 18 8 -0.1900 -5.3473 5.7586 19 6 1.4238 -6.6046 3.8230 20 8 2.5735 -6.4237 4.1476 21 8 0.9249 -7.8502 3.7864 22 6 1.7521 -3.4758 -1.2134 23 6 0.4482 -2.7033 -1.4292 24 1 -0.4850 0.8368 -0.0742 25 1 0.0688 -2.3406 1.6414 26 1 0.0989 -3.9660 0.9163 27 1 1.3989 -3.7495 4.4377 28 1 -1.2349 -4.4806 4.2011 29 1 -1.2734 -6.2593 4.2542 30 1 -0.8992 -5.3127 6.4150 31 1 1.5234 -8.5702 4.0284 32 1 2.6165 -3.1801 -1.8078 33 1 1.6754 -4.5403 -0.9916 34 1 -0.4856 -3.2600 -1.3493 35 1 0.4547 -1.8994 -2.1652 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568001627.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:06 Heat of formation + Delta-G solvation = -217.583605 kcal Electronic energy + Delta-G solvation = -22732.609538 eV Core-core repulsion = 19050.651634 eV Total energy + Delta-G solvation = -3681.957905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34112 -38.56323 -38.26978 -37.94172 -37.10423 -36.80522 -35.61623 -34.06584 -30.19726 -29.88681 -27.47796 -25.45382 -22.96640 -22.29897 -21.61470 -20.36458 -19.24787 -18.70614 -18.46632 -18.13712 -17.90315 -17.02753 -16.72913 -16.57916 -16.52823 -15.95105 -15.59308 -15.23649 -14.86106 -14.33689 -13.95917 -13.74130 -13.55594 -13.26014 -13.14597 -12.95014 -12.92646 -12.84471 -12.57282 -12.44950 -12.37070 -12.18926 -12.05127 -11.86514 -11.54426 -10.92449 -10.87387 -10.72063 -10.52369 -9.90021 -8.19464 -6.32260 -0.61397 1.25508 1.39365 1.42375 1.49335 1.78077 2.13546 2.41575 2.94031 3.08601 3.19304 3.35564 3.45885 3.60070 3.96139 4.08098 4.17216 4.31705 4.47285 4.51420 4.61326 4.73717 4.81319 4.86172 5.00895 5.24952 5.47922 5.62863 5.64717 5.73239 5.93321 6.23588 6.73264 6.93060 7.01517 7.40027 8.87998 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.005327 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.064251 B = 5254.925512 C = 5467.688998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.045 3.955 3 Si 0.929 3.071 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.043 0.957 9 C 0.005 3.995 10 C -0.543 4.543 11 S 2.610 3.390 12 O -0.992 6.992 13 O -0.992 6.992 14 N -1.096 6.096 15 C 0.152 3.848 16 H 0.160 0.840 17 C 0.079 3.921 18 O -0.594 6.594 19 C 0.468 3.532 20 O -0.542 6.542 21 O -0.504 6.504 22 C -0.201 4.201 23 C -0.130 4.130 24 H 0.266 0.734 25 H 0.134 0.866 26 H 0.146 0.854 27 H 0.426 0.574 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.407 0.593 31 H 0.425 0.575 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.184 -13.424 7.599 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.158 4.158 3 Si 0.755 3.245 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.062 0.938 9 C 0.003 3.997 10 C -0.677 4.677 11 S 2.708 3.292 12 O -0.982 6.982 13 O -0.983 6.983 14 N -0.854 5.854 15 C 0.042 3.958 16 H 0.177 0.823 17 C 0.000 4.000 18 O -0.404 6.404 19 C 0.308 3.692 20 O -0.431 6.431 21 O -0.317 6.317 22 C -0.239 4.239 23 C -0.169 4.169 24 H 0.075 0.925 25 H 0.152 0.848 26 H 0.164 0.836 27 H 0.262 0.738 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.258 0.742 31 H 0.287 0.713 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.778 -12.981 7.124 16.725 hybrid contribution 0.176 0.926 0.611 1.123 sum -7.601 -12.055 7.735 16.215 Atomic orbital electron populations 1.70006 1.06264 1.27924 1.48238 1.25420 0.95635 1.01208 0.93522 0.86063 0.79267 0.80461 0.78757 1.19481 1.19609 1.20698 1.20683 0.92651 0.90956 1.52714 0.93843 1.18423 1.00928 0.94202 0.86172 1.29838 1.16269 1.10234 1.11323 1.04923 0.76967 0.72765 0.74527 1.93488 1.69865 1.54961 1.79842 1.93497 1.73544 1.52079 1.79131 1.55485 1.70214 1.33003 1.26748 1.20888 0.90490 0.79804 1.04661 0.82332 1.22523 0.91538 1.04935 0.81039 1.86456 1.39762 1.97837 1.16372 1.24226 0.86910 0.85211 0.72814 1.90714 1.21120 1.86307 1.44914 1.84422 1.48956 1.16743 1.81569 1.23287 0.98635 0.97042 1.04895 1.22530 0.93619 1.00652 1.00095 0.92486 0.84796 0.83574 0.73831 0.88690 0.87639 0.74176 0.71314 0.90324 0.87955 0.88501 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.36 12.93 21.45 0.28 -47.08 16 2 C 0.05 2.44 5.39 84.66 0.46 2.90 16 3 Si 0.93 43.84 29.55 68.60 2.03 45.86 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 7 C -0.53 -29.28 7.97 25.60 0.20 -29.07 16 8 H 0.04 2.53 7.82 -2.91 -0.02 2.51 16 9 C 0.01 0.24 1.33 -52.93 -0.07 0.17 16 10 C -0.54 -20.48 5.83 71.98 0.42 -20.06 16 11 S 2.61 105.90 5.18 -56.49 -0.29 105.61 16 12 O -0.99 -44.43 17.77 -127.65 -2.27 -46.70 16 13 O -0.99 -50.09 17.48 -127.65 -2.23 -52.32 16 14 N -1.10 -33.20 4.84 -172.52 -0.84 -34.04 16 15 C 0.15 3.41 2.99 44.25 0.13 3.55 16 16 H 0.16 2.59 7.13 -2.39 -0.02 2.57 16 17 C 0.08 1.06 6.77 71.98 0.49 1.55 16 18 O -0.59 -9.60 12.85 -148.98 -1.91 -11.51 16 19 C 0.47 12.75 7.17 71.24 0.51 13.26 16 20 O -0.54 -20.29 17.19 21.98 0.38 -19.91 16 21 O -0.50 -9.11 13.35 -51.39 -0.69 -9.80 16 22 C -0.20 -8.29 9.96 30.62 0.30 -7.98 16 23 C -0.13 -5.44 9.44 30.62 0.29 -5.15 16 24 H 0.27 13.51 8.32 -92.71 -0.77 12.74 16 25 H 0.13 5.22 8.14 -2.39 -0.02 5.20 16 26 H 0.15 3.93 7.36 -2.39 -0.02 3.91 16 27 H 0.43 12.48 8.54 -96.74 -0.83 11.66 16 28 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.41 2.37 9.12 -74.06 -0.68 1.70 16 31 H 0.43 4.62 9.10 -74.06 -0.67 3.95 16 32 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 33 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 34 H 0.10 3.44 8.14 -2.38 -0.02 3.42 16 35 H 0.07 3.02 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -83.72 323.69 -3.83 -87.56 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -1.02 Total: 23.17 kcal Atomic # 6 Polarization: -43.58 SS G_CDS: 2.73 Total: -40.84 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -0.56 Total: -81.12 kcal Atomic # 8 Polarization: -133.51 SS G_CDS: -6.72 Total: -140.24 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 105.90 SS G_CDS: -0.29 Total: 105.61 kcal Total: -83.72 -3.83 -87.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568001627.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.026 kcal (2) G-P(sol) polarization free energy of solvation -83.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds