Wall clock time and date at job start Fri Apr 10 2020 14:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99747 * 2 1 4 4 H 1.48493 * 109.47313 * 239.99395 * 3 2 1 5 5 H 1.48498 * 109.47022 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47008 * 119.99769 * 3 2 1 7 7 C 1.37872 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00227 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47324 * 180.02562 * 9 7 2 11 11 S 1.81408 * 109.47004 * 180.02562 * 10 9 7 12 12 O 1.42091 * 110.54298 * 68.37636 * 11 10 9 13 13 O 1.42095 * 110.53927 * 291.62313 * 11 10 9 14 14 N 1.65603 * 104.44667 * 180.02562 * 11 10 9 15 15 C 1.47148 * 120.98254 * 90.00077 * 14 11 10 16 16 C 1.53300 * 108.41473 * 230.53420 * 15 14 11 17 17 O 1.42973 * 109.21531 * 307.75907 * 16 15 14 18 18 C 1.42955 * 114.20296 * 62.52102 * 17 16 15 19 19 H 1.08997 * 109.55715 * 57.38891 * 18 17 16 20 20 C 1.50698 * 109.51357 * 177.51315 * 18 17 16 21 21 O 1.20828 * 120.00106 * 4.74865 * 20 18 17 22 22 O 1.34230 * 120.00286 * 184.74579 * 20 18 17 23 23 C 1.47148 * 120.97820 * 270.01855 * 14 11 10 24 24 H 0.96996 * 119.99916 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46349 * 60.00015 * 9 7 2 26 26 H 1.09007 * 109.46996 * 300.00602 * 9 7 2 27 27 H 1.08996 * 109.47088 * 60.00188 * 10 9 7 28 28 H 1.08999 * 109.47272 * 300.00458 * 10 9 7 29 29 H 1.09002 * 109.68336 * 350.27765 * 15 14 11 30 30 H 1.08999 * 109.68144 * 110.79435 * 15 14 11 31 31 H 1.09005 * 109.51026 * 67.64130 * 16 15 14 32 32 H 1.08993 * 109.51254 * 187.79405 * 16 15 14 33 33 H 0.96698 * 117.00674 * 179.97438 * 22 20 18 34 34 H 1.09002 * 109.68553 * 249.16595 * 23 14 11 35 35 H 1.09004 * 109.68438 * 9.72537 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0027 11 16 1.3384 -5.2331 0.0034 12 8 0.6649 -5.4205 -1.2336 13 8 0.6641 -5.4189 1.2402 14 7 2.5207 -6.3927 0.0052 15 6 3.0606 -6.9220 1.2676 16 6 4.5907 -6.8500 1.2079 17 8 5.0450 -7.4808 0.0080 18 6 4.5926 -6.8509 -1.1929 19 1 4.9079 -5.8075 -1.1987 20 6 5.1796 -7.5606 -2.3856 21 8 5.8406 -8.5599 -2.2290 22 8 4.9681 -7.0829 -3.6220 23 6 3.0626 -6.9238 -1.2556 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8881 26 1 0.6248 -2.5563 0.8920 27 1 2.8720 -3.6035 0.8927 28 1 2.8721 -3.6050 -0.8872 29 1 2.6971 -6.3227 2.1023 30 1 2.7466 -7.9580 1.3953 31 1 4.9065 -5.8067 1.2121 32 1 5.0133 -7.3626 2.0720 33 1 5.3652 -7.5720 -4.3557 34 1 2.7494 -7.9601 -1.3822 35 1 2.7006 -6.3255 -2.0917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580055092.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:40 Heat of formation + Delta-G solvation = -201.651827 kcal Electronic energy + Delta-G solvation = -22284.094680 eV Core-core repulsion = 18602.827629 eV Total energy + Delta-G solvation = -3681.267051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.086 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81052 -39.15433 -36.82393 -36.41351 -35.63289 -34.98197 -33.96800 -32.15562 -31.24345 -27.89396 -25.70426 -25.29574 -22.92732 -21.77802 -21.02063 -18.94434 -18.42862 -17.89799 -16.99311 -16.69793 -16.61838 -16.49497 -15.83533 -15.54780 -15.06157 -14.74976 -14.60991 -14.34744 -14.13640 -13.53069 -13.08558 -12.59443 -12.57435 -12.07483 -11.99731 -11.85437 -11.80276 -11.73218 -11.51879 -11.17402 -11.12177 -11.04691 -10.75872 -10.57867 -10.45922 -10.42326 -9.80648 -9.37391 -8.93763 -8.55592 -6.17856 -4.24149 0.54606 1.83474 2.22448 2.74875 3.23387 3.28804 3.30119 3.71741 4.14177 4.22224 4.31662 4.36382 4.51010 4.64380 4.80339 4.87652 5.00302 5.08960 5.17308 5.26944 5.41332 5.49776 5.55940 5.66439 5.81884 6.15209 6.30107 6.37087 6.61080 7.21731 7.27480 7.58095 7.74274 8.10337 8.78874 9.41110 10.93046 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.004520 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.423043 B = 6193.366200 C = 6744.970331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.588 4.588 11 S 2.588 3.412 12 O -0.958 6.958 13 O -0.957 6.957 14 N -1.009 6.009 15 C 0.084 3.916 16 C 0.048 3.952 17 O -0.355 6.355 18 C 0.085 3.915 19 H 0.108 0.892 20 C 0.490 3.510 21 O -0.493 6.493 22 O -0.507 6.507 23 C 0.104 3.896 24 H 0.266 0.734 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.417 0.583 34 H 0.084 0.916 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.060 -13.746 -1.807 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.687 3.313 12 O -0.948 6.948 13 O -0.948 6.948 14 N -0.845 5.845 15 C -0.041 4.041 16 C -0.030 4.030 17 O -0.273 6.273 18 C 0.024 3.976 19 H 0.125 0.875 20 C 0.330 3.670 21 O -0.379 6.379 22 O -0.320 6.320 23 C -0.023 4.023 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.277 0.723 34 H 0.102 0.898 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.063 -14.099 -1.425 16.821 hybrid contribution 1.208 1.123 -0.437 1.706 sum 10.271 -12.976 -1.863 16.654 Atomic orbital electron populations 1.69940 1.06131 1.27413 1.49276 1.25060 0.94969 0.99547 0.94797 0.86523 0.79499 0.82493 0.78715 1.20059 1.21035 1.20071 1.20939 0.92999 0.89693 1.52555 0.92083 1.18973 0.92656 0.90467 0.98967 1.30511 1.13757 1.17831 1.10094 1.05954 0.74778 0.76300 0.74282 1.93549 1.70937 1.85109 1.45230 1.93548 1.70843 1.85153 1.45248 1.58248 1.59036 1.56621 1.10584 1.22122 0.94146 1.01776 0.86094 1.23180 0.93824 0.99048 0.86903 1.87997 1.72779 1.54329 1.12239 1.21731 0.94810 0.97283 0.83760 0.87472 1.22625 0.77735 0.82638 0.84003 1.90751 1.36369 1.24574 1.86167 1.84499 1.72752 1.58125 1.16653 1.21838 0.90562 1.02482 0.87368 0.92398 0.94756 0.94805 0.86161 0.86155 0.87541 0.90063 0.91619 0.86639 0.72301 0.89789 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.52 -13.91 9.11 -34.44 -0.31 -14.22 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.56 16 10 C -0.59 -10.38 6.12 37.15 0.23 -10.16 16 11 S 2.59 43.54 5.42 -107.50 -0.58 42.96 16 12 O -0.96 -18.70 16.81 -57.54 -0.97 -19.67 16 13 O -0.96 -18.60 16.81 -57.54 -0.97 -19.57 16 14 N -1.01 -12.74 3.27 -113.06 -0.37 -13.11 16 15 C 0.08 0.87 6.50 -3.53 -0.02 0.85 16 16 C 0.05 0.43 6.99 37.31 0.26 0.69 16 17 O -0.36 -4.07 9.92 -55.11 -0.55 -4.62 16 18 C 0.09 0.90 3.30 -27.73 -0.09 0.81 16 19 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 20 C 0.49 5.26 7.66 36.00 0.28 5.54 16 21 O -0.49 -6.84 17.27 -25.46 -0.44 -7.28 16 22 O -0.51 -3.99 13.42 -39.26 -0.53 -4.52 16 23 C 0.10 1.17 5.77 -3.53 -0.02 1.15 16 24 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.87 8.14 -51.92 -0.42 0.45 16 27 H 0.12 1.85 8.14 -51.93 -0.42 1.43 16 28 H 0.12 1.87 8.14 -51.92 -0.42 1.44 16 29 H 0.11 1.05 7.22 -51.93 -0.38 0.67 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.42 1.40 9.10 45.56 0.41 1.81 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.12 1.26 7.23 -51.93 -0.38 0.88 16 LS Contribution 315.83 15.07 4.76 4.76 Total: -1.00 -36.87 315.83 -7.53 -44.40 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -3.68 Total: -0.61 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.37 Total: -38.21 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: -3.45 Total: -55.64 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 43.54 SS G_CDS: -0.58 Total: 42.96 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -36.87 -7.53 -44.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580055092.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.256 kcal (2) G-P(sol) polarization free energy of solvation -36.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds