Wall clock time and date at job start Fri Apr 10 2020 14:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99747 * 2 1 4 4 H 1.48493 * 109.47313 * 239.99395 * 3 2 1 5 5 H 1.48498 * 109.47022 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47008 * 119.99769 * 3 2 1 7 7 C 1.37872 * 120.00251 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99897 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00227 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47324 * 180.02562 * 9 7 2 11 11 S 1.81408 * 109.47004 * 180.02562 * 10 9 7 12 12 O 1.42091 * 110.54298 * 68.37636 * 11 10 9 13 13 O 1.42095 * 110.53927 * 291.62313 * 11 10 9 14 14 N 1.65603 * 104.44667 * 180.02562 * 11 10 9 15 15 C 1.47148 * 120.98254 * 90.00077 * 14 11 10 16 16 C 1.53300 * 108.41473 * 230.53420 * 15 14 11 17 17 O 1.42973 * 109.21531 * 307.75907 * 16 15 14 18 18 C 1.42955 * 114.20296 * 62.52102 * 17 16 15 19 19 H 1.08997 * 109.55715 * 57.38891 * 18 17 16 20 20 C 1.50698 * 109.51357 * 177.51315 * 18 17 16 21 21 O 1.20828 * 120.00106 * 4.74865 * 20 18 17 22 22 O 1.34230 * 120.00286 * 184.74579 * 20 18 17 23 23 C 1.47148 * 120.97820 * 270.01855 * 14 11 10 24 24 H 0.96996 * 119.99916 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46349 * 60.00015 * 9 7 2 26 26 H 1.09007 * 109.46996 * 300.00602 * 9 7 2 27 27 H 1.08996 * 109.47088 * 60.00188 * 10 9 7 28 28 H 1.08999 * 109.47272 * 300.00458 * 10 9 7 29 29 H 1.09002 * 109.68336 * 350.27765 * 15 14 11 30 30 H 1.08999 * 109.68144 * 110.79435 * 15 14 11 31 31 H 1.09005 * 109.51026 * 67.64130 * 16 15 14 32 32 H 1.08993 * 109.51254 * 187.79405 * 16 15 14 33 33 H 0.96698 * 117.00674 * 179.97438 * 22 20 18 34 34 H 1.09002 * 109.68553 * 249.16595 * 23 14 11 35 35 H 1.09004 * 109.68438 * 9.72537 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0017 10 6 2.2454 -3.6620 0.0027 11 16 1.3384 -5.2331 0.0034 12 8 0.6649 -5.4205 -1.2336 13 8 0.6641 -5.4189 1.2402 14 7 2.5207 -6.3927 0.0052 15 6 3.0606 -6.9220 1.2676 16 6 4.5907 -6.8500 1.2079 17 8 5.0450 -7.4808 0.0080 18 6 4.5926 -6.8509 -1.1929 19 1 4.9079 -5.8075 -1.1987 20 6 5.1796 -7.5606 -2.3856 21 8 5.8406 -8.5599 -2.2290 22 8 4.9681 -7.0829 -3.6220 23 6 3.0626 -6.9238 -1.2556 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8881 26 1 0.6248 -2.5563 0.8920 27 1 2.8720 -3.6035 0.8927 28 1 2.8721 -3.6050 -0.8872 29 1 2.6971 -6.3227 2.1023 30 1 2.7466 -7.9580 1.3953 31 1 4.9065 -5.8067 1.2121 32 1 5.0133 -7.3626 2.0720 33 1 5.3652 -7.5720 -4.3557 34 1 2.7494 -7.9601 -1.3822 35 1 2.7006 -6.3255 -2.0917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580055092.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:39 Heat of formation + Delta-G solvation = -231.560798 kcal Electronic energy + Delta-G solvation = -22285.391630 eV Core-core repulsion = 18602.827629 eV Total energy + Delta-G solvation = -3682.564001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.61630 -39.96235 -38.28507 -37.20073 -37.07166 -35.95677 -35.84700 -33.11429 -32.95386 -28.75273 -27.58460 -26.16266 -23.96012 -23.28503 -21.94332 -20.08242 -19.32681 -19.16109 -18.45974 -17.81947 -17.65552 -17.28278 -17.10611 -16.81721 -16.52789 -16.01086 -15.67365 -15.22666 -15.13200 -15.01811 -14.45162 -13.88227 -13.73302 -13.53017 -13.31303 -13.24093 -12.95459 -12.89003 -12.79384 -12.67921 -12.58550 -12.21646 -12.18711 -11.94572 -11.83554 -11.55663 -11.39604 -10.97721 -10.61853 -9.97219 -8.24085 -6.37934 -0.81344 1.01392 1.43376 1.45972 1.52192 1.54138 1.60719 2.39750 2.80377 2.96211 3.09641 3.11922 3.37905 3.58168 3.88837 4.02342 4.04677 4.09260 4.17714 4.23384 4.38516 4.58983 4.63269 4.76857 4.90957 4.93891 5.26342 5.29628 5.37365 5.51217 5.70192 5.90223 6.07630 6.75917 6.92697 7.32571 8.87845 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018595 B = 0.004520 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.423043 B = 6193.366200 C = 6744.970331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.020 3.980 10 C -0.585 4.585 11 S 2.612 3.388 12 O -0.989 6.989 13 O -0.987 6.987 14 N -0.999 5.999 15 C 0.075 3.925 16 C 0.048 3.952 17 O -0.372 6.372 18 C 0.083 3.917 19 H 0.128 0.872 20 C 0.499 3.501 21 O -0.529 6.529 22 O -0.500 6.500 23 C 0.099 3.901 24 H 0.267 0.733 25 H 0.007 0.993 26 H 0.007 0.993 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.437 0.563 34 H 0.088 0.912 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.384 -13.723 -1.782 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.096 0.904 9 C -0.019 4.019 10 C -0.717 4.717 11 S 2.711 3.289 12 O -0.979 6.979 13 O -0.977 6.977 14 N -0.838 5.838 15 C -0.049 4.049 16 C -0.029 4.029 17 O -0.291 6.291 18 C 0.023 3.977 19 H 0.145 0.855 20 C 0.340 3.660 21 O -0.418 6.418 22 O -0.315 6.315 23 C -0.027 4.027 24 H 0.075 0.925 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.165 0.835 28 H 0.164 0.836 29 H 0.129 0.871 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.300 0.700 34 H 0.107 0.893 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.397 -14.069 -1.420 18.161 hybrid contribution 0.486 1.028 -0.475 1.232 sum 11.883 -13.041 -1.895 17.744 Atomic orbital electron populations 1.70093 1.08080 1.28343 1.50915 1.26081 0.95777 1.03782 0.94441 0.85401 0.78141 0.77482 0.79453 1.18791 1.21252 1.18761 1.21486 0.94041 0.90655 1.51449 0.90391 1.18827 0.93634 0.93019 0.96429 1.30389 1.12772 1.15859 1.12728 1.04925 0.74808 0.76266 0.72892 1.93502 1.72326 1.85604 1.46479 1.93504 1.72160 1.85642 1.46414 1.57815 1.58473 1.55238 1.12242 1.22425 0.95452 1.02131 0.84929 1.23383 0.92370 1.00263 0.86899 1.87996 1.72937 1.55164 1.12991 1.21816 0.93866 0.98330 0.83712 0.85460 1.22655 0.76843 0.81834 0.84705 1.90742 1.38196 1.26123 1.86763 1.84465 1.72457 1.58106 1.16493 1.21995 0.91363 1.02694 0.86617 0.92454 0.97501 0.97503 0.83509 0.83625 0.87068 0.89325 0.90238 0.84110 0.70002 0.89333 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 3 Si 0.97 41.82 29.54 68.60 2.03 43.84 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.54 -28.37 9.11 25.60 0.23 -28.14 16 8 H 0.08 3.74 7.74 -2.91 -0.02 3.72 16 9 C 0.02 0.98 4.98 29.85 0.15 1.13 16 10 C -0.58 -19.86 6.12 71.98 0.44 -19.42 16 11 S 2.61 86.32 5.42 -56.49 -0.31 86.01 16 12 O -0.99 -38.65 16.81 -127.65 -2.15 -40.79 16 13 O -0.99 -38.29 16.81 -127.65 -2.15 -40.44 16 14 N -1.00 -23.38 3.27 -511.61 -1.67 -25.06 16 15 C 0.08 1.38 6.50 86.36 0.56 1.94 16 16 C 0.05 0.70 6.99 72.08 0.50 1.20 16 17 O -0.37 -7.57 9.92 -129.97 -1.29 -8.86 16 18 C 0.08 1.55 3.30 29.95 0.10 1.65 16 19 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 20 C 0.50 9.72 7.66 71.24 0.55 10.27 16 21 O -0.53 -13.99 17.27 28.37 0.49 -13.50 16 22 O -0.50 -6.70 13.42 -51.42 -0.69 -7.39 16 23 C 0.10 2.05 5.77 86.36 0.50 2.54 16 24 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 25 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 26 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 27 H 0.15 4.16 8.14 -2.39 -0.02 4.14 16 28 H 0.15 4.16 8.14 -2.39 -0.02 4.14 16 29 H 0.11 1.96 7.22 -2.39 -0.02 1.94 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.44 1.94 9.10 -74.06 -0.67 1.27 16 34 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.12 2.37 7.23 -2.38 -0.02 2.35 16 Total: -1.00 -80.38 315.83 -1.51 -81.89 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.44 Total: 8.01 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 3.49 Total: -28.49 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -1.39 Total: -80.28 kcal Atomic # 8 Polarization: -105.20 SS G_CDS: -5.78 Total: -110.98 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 86.32 SS G_CDS: -0.31 Total: 86.01 kcal Total: -80.38 -1.51 -81.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580055092.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.669 kcal (2) G-P(sol) polarization free energy of solvation -80.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds