Wall clock time and date at job start Fri Apr 10 2020 14:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99266 * 2 1 4 4 H 1.48498 * 109.47340 * 269.99912 * 3 2 1 5 5 H 1.48502 * 109.47366 * 30.00696 * 3 2 1 6 6 H 1.48504 * 109.46554 * 150.00370 * 3 2 1 7 7 C 1.38950 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99561 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00035 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99511 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99752 * 180.02562 * 10 9 7 13 13 O 1.45201 * 109.46885 * 179.97438 * 12 10 9 14 14 C 1.34746 * 117.00196 * 179.97438 * 13 12 10 15 15 O 1.21507 * 119.99858 * 0.02562 * 14 13 12 16 16 C 1.47416 * 120.00158 * 180.02562 * 14 13 12 17 17 C 1.39864 * 120.16023 * 0.02562 * 16 14 13 18 18 C 1.37731 * 119.97258 * 179.97438 * 17 16 14 19 19 C 1.38550 * 120.36616 * 0.02562 * 18 17 16 20 20 C 1.38427 * 120.38792 * 0.02562 * 19 18 17 21 21 C 1.39288 * 119.92025 * 359.69359 * 20 19 18 22 22 O 1.36188 * 108.72703 * 179.79435 * 21 20 19 23 23 C 1.43988 * 105.59031 * 343.12006 * 22 21 20 24 24 O 1.36541 * 131.50451 * 179.97438 * 20 19 18 25 25 H 0.96999 * 120.00563 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00230 * 0.02562 * 9 7 2 27 27 H 1.08997 * 109.47453 * 59.99983 * 12 10 9 28 28 H 1.08994 * 109.47345 * 299.99439 * 12 10 9 29 29 H 1.07997 * 120.01556 * 359.95521 * 17 16 14 30 30 H 1.07997 * 119.81470 * 180.02562 * 18 17 16 31 31 H 1.08004 * 119.80433 * 179.97438 * 19 18 17 32 32 H 1.09002 * 110.57376 * 268.31512 * 23 22 21 33 33 H 1.08998 * 110.70462 * 145.49532 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2479 1.6179 0.0000 4 1 2.4954 2.0466 -1.4000 5 1 1.4454 2.6527 0.7002 6 1 3.5455 1.4403 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2031 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9976 -3.5578 -0.0005 11 8 3.2105 -3.5576 -0.0010 12 6 1.2441 -4.8629 -0.0011 13 8 2.1878 -5.9664 -0.0016 14 6 1.6729 -7.2117 -0.0016 15 8 0.4683 -7.3710 -0.0017 16 6 2.5709 -8.3807 -0.0016 17 6 3.9580 -8.2012 -0.0009 18 6 4.7935 -9.2961 -0.0003 19 6 4.2681 -10.5781 -0.0009 20 6 2.8976 -10.7732 -0.0026 21 6 2.0397 -9.6759 0.0027 22 8 0.7543 -10.1258 -0.0049 23 6 0.8289 -11.5032 -0.4176 24 8 2.1459 -11.9130 -0.0039 25 1 -0.4851 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0005 27 1 0.6178 -4.9205 -0.8913 28 1 0.6172 -4.9209 0.8886 29 1 4.3738 -7.2044 -0.0012 30 1 5.8642 -9.1546 0.0006 31 1 4.9316 -11.4303 -0.0008 32 1 0.7243 -11.5852 -1.4995 33 1 0.0669 -12.0982 0.0860 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:15 Heat of formation + Delta-G solvation = -145.920766 kcal Electronic energy + Delta-G solvation = -22251.094619 eV Core-core repulsion = 18436.800297 eV Total energy + Delta-G solvation = -3814.294322 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.52559 -40.21019 -38.26423 -37.78629 -36.63289 -35.95036 -33.99683 -31.54729 -31.32285 -30.29828 -28.35345 -26.15261 -25.02167 -24.09262 -23.14855 -21.16595 -19.57641 -18.63901 -18.22518 -18.04145 -17.60373 -17.14665 -16.49648 -16.22931 -16.03297 -15.40760 -14.88021 -14.58250 -14.42145 -14.07401 -14.01930 -13.86652 -13.24010 -13.13109 -13.10181 -12.49021 -12.26185 -12.02136 -11.85856 -11.61903 -11.25552 -11.13142 -10.44246 -10.43536 -10.39837 -10.28629 -9.60303 -9.27304 -8.52301 -8.41344 -8.08108 -6.49640 -3.91755 0.38033 0.83784 2.35926 2.52391 2.61472 3.08986 3.13521 3.23725 3.29716 3.40611 3.74246 4.05431 4.17831 4.36477 4.51076 4.58876 4.73654 4.80627 4.94305 5.02552 5.13334 5.15579 5.45890 5.61441 5.67921 5.70935 5.88589 6.00935 6.06491 6.12245 6.57105 6.74849 7.48023 7.83201 7.96083 8.48639 9.07202 9.39607 9.89276 10.67587 Molecular weight = 293.08amu Principal moments of inertia in cm(-1) A = 0.039116 B = 0.002908 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.643484 B = 9626.892676 C =10315.100866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.062 3.938 13 O -0.320 6.320 14 C 0.502 3.498 15 O -0.497 6.497 16 C -0.105 4.105 17 C -0.048 4.048 18 C -0.124 4.124 19 C -0.067 4.067 20 C 0.013 3.987 21 C 0.100 3.900 22 O -0.283 6.283 23 C 0.208 3.792 24 O -0.307 6.307 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.161 0.839 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.087 0.913 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.881 -21.441 -1.074 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.224 3.776 11 O -0.460 6.460 12 C -0.016 4.016 13 O -0.235 6.235 14 C 0.346 3.654 15 O -0.386 6.386 16 C -0.107 4.107 17 C -0.066 4.066 18 C -0.142 4.142 19 C -0.086 4.086 20 C -0.032 4.032 21 C 0.054 3.946 22 O -0.197 6.197 23 C 0.096 3.904 24 O -0.224 6.224 25 H 0.084 0.916 26 H 0.229 0.771 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.179 0.821 30 H 0.166 0.834 31 H 0.159 0.841 32 H 0.105 0.895 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.007 -21.407 -0.967 21.800 hybrid contribution -0.755 0.678 -0.065 1.017 sum 3.251 -20.728 -1.032 21.007 Atomic orbital electron populations 1.69614 1.06011 1.28495 1.49641 1.25316 0.95681 0.99873 0.96890 0.85798 0.79235 0.80424 0.78488 1.20267 1.20824 1.19258 1.19727 0.93485 0.81738 1.48198 0.87580 1.41702 1.09395 1.04073 1.63789 1.19286 0.88318 0.84020 0.85959 1.90551 1.13370 1.86794 1.55315 1.22774 0.90821 0.84299 1.03658 1.86572 1.39969 1.13674 1.83272 1.20858 0.87059 0.83667 0.73797 1.90878 1.15682 1.86815 1.45273 1.18198 0.93321 0.87180 1.11969 1.21539 0.90072 1.01375 0.93606 1.20966 1.00922 0.90405 1.01943 1.20336 0.90143 0.98754 0.99387 1.19640 0.93368 0.83638 1.06510 1.19670 0.83287 0.93191 0.98474 1.87518 1.22842 1.26065 1.83323 1.25769 0.84661 0.79438 1.00511 1.87392 1.21432 1.28407 1.85130 0.91619 0.77134 0.89429 0.89414 0.82124 0.83351 0.84092 0.89503 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.08 13.05 55.50 0.72 -23.35 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 9 N -0.55 -13.95 5.29 -10.97 -0.06 -14.01 16 10 C 0.44 10.56 7.86 -10.99 -0.09 10.47 16 11 O -0.58 -15.76 16.08 -14.11 -0.23 -15.99 16 12 C 0.06 1.20 5.95 36.00 0.21 1.41 16 13 O -0.32 -6.07 9.00 -47.30 -0.43 -6.50 16 14 C 0.50 8.78 7.89 34.47 0.27 9.06 16 15 O -0.50 -9.66 15.77 -24.41 -0.38 -10.04 16 16 C -0.10 -1.51 5.88 -104.89 -0.62 -2.12 16 17 C -0.05 -0.55 9.61 -39.16 -0.38 -0.93 16 18 C -0.12 -1.07 10.02 -39.65 -0.40 -1.46 16 19 C -0.07 -0.59 10.05 -39.40 -0.40 -0.99 16 20 C 0.01 0.14 7.14 -39.12 -0.28 -0.14 16 21 C 0.10 1.36 6.79 -38.53 -0.26 1.10 16 22 O -0.28 -3.86 10.57 -49.95 -0.53 -4.38 16 23 C 0.21 1.82 8.89 101.05 0.90 2.72 16 24 O -0.31 -3.23 11.41 -45.82 -0.52 -3.75 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.16 1.88 7.61 -52.49 -0.40 1.48 16 30 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 31 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 306.95 15.07 4.63 4.63 Total: -1.00 -34.12 306.95 -5.86 -39.98 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -2.77 Total: 6.59 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: -1.27 Total: 11.22 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.67 Total: -37.36 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -2.09 Total: -40.66 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.12 -5.86 -39.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.945 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds