Wall clock time and date at job start Fri Apr 10 2020 14:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99266 * 2 1 4 4 H 1.48498 * 109.47340 * 269.99912 * 3 2 1 5 5 H 1.48502 * 109.47366 * 30.00696 * 3 2 1 6 6 H 1.48504 * 109.46554 * 150.00370 * 3 2 1 7 7 C 1.38950 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99561 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00035 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99511 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99752 * 180.02562 * 10 9 7 13 13 O 1.45201 * 109.46885 * 179.97438 * 12 10 9 14 14 C 1.34746 * 117.00196 * 179.97438 * 13 12 10 15 15 O 1.21507 * 119.99858 * 0.02562 * 14 13 12 16 16 C 1.47416 * 120.00158 * 180.02562 * 14 13 12 17 17 C 1.39864 * 120.16023 * 0.02562 * 16 14 13 18 18 C 1.37731 * 119.97258 * 179.97438 * 17 16 14 19 19 C 1.38550 * 120.36616 * 0.02562 * 18 17 16 20 20 C 1.38427 * 120.38792 * 0.02562 * 19 18 17 21 21 C 1.39288 * 119.92025 * 359.69359 * 20 19 18 22 22 O 1.36188 * 108.72703 * 179.79435 * 21 20 19 23 23 C 1.43988 * 105.59031 * 343.12006 * 22 21 20 24 24 O 1.36541 * 131.50451 * 179.97438 * 20 19 18 25 25 H 0.96999 * 120.00563 * 359.97438 * 1 2 3 26 26 H 0.97005 * 120.00230 * 0.02562 * 9 7 2 27 27 H 1.08997 * 109.47453 * 59.99983 * 12 10 9 28 28 H 1.08994 * 109.47345 * 299.99439 * 12 10 9 29 29 H 1.07997 * 120.01556 * 359.95521 * 17 16 14 30 30 H 1.07997 * 119.81470 * 180.02562 * 18 17 16 31 31 H 1.08004 * 119.80433 * 179.97438 * 19 18 17 32 32 H 1.09002 * 110.57376 * 268.31512 * 23 22 21 33 33 H 1.08998 * 110.70462 * 145.49532 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2479 1.6179 0.0000 4 1 2.4954 2.0466 -1.4000 5 1 1.4454 2.6527 0.7002 6 1 3.5455 1.4403 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 3.0890 -1.2031 -0.0010 9 7 1.3236 -2.3906 -0.0005 10 6 1.9976 -3.5578 -0.0005 11 8 3.2105 -3.5576 -0.0010 12 6 1.2441 -4.8629 -0.0011 13 8 2.1878 -5.9664 -0.0016 14 6 1.6729 -7.2117 -0.0016 15 8 0.4683 -7.3710 -0.0017 16 6 2.5709 -8.3807 -0.0016 17 6 3.9580 -8.2012 -0.0009 18 6 4.7935 -9.2961 -0.0003 19 6 4.2681 -10.5781 -0.0009 20 6 2.8976 -10.7732 -0.0026 21 6 2.0397 -9.6759 0.0027 22 8 0.7543 -10.1258 -0.0049 23 6 0.8289 -11.5032 -0.4176 24 8 2.1459 -11.9130 -0.0039 25 1 -0.4851 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0005 27 1 0.6178 -4.9205 -0.8913 28 1 0.6172 -4.9209 0.8886 29 1 4.3738 -7.2044 -0.0012 30 1 5.8642 -9.1546 0.0006 31 1 4.9316 -11.4303 -0.0008 32 1 0.7243 -11.5852 -1.4995 33 1 0.0669 -12.0982 0.0860 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731242765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:15 Heat of formation + Delta-G solvation = -169.009891 kcal Electronic energy + Delta-G solvation = -22252.095839 eV Core-core repulsion = 18436.800297 eV Total energy + Delta-G solvation = -3815.295542 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.34904 -41.61304 -40.06380 -38.76579 -37.68301 -37.24410 -36.03403 -33.42962 -32.44023 -31.10555 -29.99421 -26.87717 -26.76442 -25.37492 -23.99584 -22.35404 -21.45257 -20.08713 -19.67429 -19.10140 -18.53338 -18.28624 -17.78281 -17.62254 -17.38419 -16.85053 -16.34897 -15.82806 -15.78050 -15.60572 -15.27672 -14.75567 -14.72571 -14.20479 -14.06323 -13.83491 -13.69084 -13.55929 -13.16586 -12.93613 -12.79461 -12.47443 -12.11498 -11.99326 -11.92858 -11.73738 -11.57734 -10.52610 -10.15041 -10.12312 -9.23605 -8.52412 -6.03284 -0.57917 0.01075 1.21894 1.29806 1.36416 1.44374 1.57608 1.65731 1.85841 2.29252 2.36652 2.48963 2.94457 3.13043 3.32285 3.57664 3.72142 3.84767 3.98830 4.03879 4.11562 4.15770 4.18796 4.19707 4.37333 4.69391 4.86490 5.11931 5.14796 5.25036 5.36294 5.37049 5.88231 5.94353 6.42405 6.53588 7.02097 7.38747 7.91529 8.64698 Molecular weight = 293.08amu Principal moments of inertia in cm(-1) A = 0.039116 B = 0.002908 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.643484 B = 9626.892676 C =10315.100866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.557 5.557 10 C 0.439 3.561 11 O -0.613 6.613 12 C 0.071 3.929 13 O -0.332 6.332 14 C 0.503 3.497 15 O -0.525 6.525 16 C -0.135 4.135 17 C -0.055 4.055 18 C -0.106 4.106 19 C -0.049 4.049 20 C 0.007 3.993 21 C 0.079 3.921 22 O -0.315 6.315 23 C 0.200 3.800 24 O -0.311 6.311 25 H 0.281 0.719 26 H 0.399 0.601 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.154 0.846 30 H 0.189 0.811 31 H 0.180 0.820 32 H 0.107 0.893 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.056 -22.705 -1.207 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.210 4.210 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.226 3.774 11 O -0.500 6.500 12 C -0.006 4.006 13 O -0.247 6.247 14 C 0.349 3.651 15 O -0.416 6.416 16 C -0.136 4.136 17 C -0.073 4.073 18 C -0.123 4.123 19 C -0.068 4.068 20 C -0.037 4.037 21 C 0.033 3.967 22 O -0.231 6.231 23 C 0.090 3.910 24 O -0.228 6.228 25 H 0.090 0.910 26 H 0.234 0.766 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.172 0.828 30 H 0.206 0.794 31 H 0.197 0.803 32 H 0.125 0.875 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.157 -22.693 -1.105 23.298 hybrid contribution -1.107 0.942 -0.033 1.454 sum 4.050 -21.751 -1.138 22.154 Atomic orbital electron populations 1.69677 1.07037 1.29758 1.49180 1.26155 0.96575 1.02671 0.95616 0.84837 0.77926 0.76224 0.78815 1.19417 1.19518 1.19363 1.19750 0.93026 0.83262 1.50628 0.89527 1.41737 1.09563 1.04177 1.63998 1.19960 0.88071 0.85149 0.84250 1.90515 1.15176 1.87615 1.56676 1.22557 0.90242 0.82472 1.05320 1.86571 1.40139 1.14275 1.83713 1.21468 0.87384 0.83588 0.72676 1.90845 1.16880 1.86932 1.46946 1.18234 0.94004 0.86207 1.15200 1.21612 0.89277 1.02337 0.94074 1.21394 1.02352 0.89225 0.99336 1.20857 0.89508 1.00009 0.96394 1.19941 0.94104 0.83047 1.06610 1.19882 0.83934 0.93566 0.99356 1.87463 1.23454 1.28386 1.83787 1.26246 0.84738 0.77823 1.02198 1.87371 1.21987 1.28083 1.85319 0.90965 0.76617 0.87647 0.87741 0.82828 0.79423 0.80277 0.87528 0.81811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 3 Si 1.00 41.95 29.55 68.60 2.03 43.98 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.34 -18.96 9.68 84.04 0.81 -18.15 16 8 H 0.09 5.12 7.16 -2.91 -0.02 5.10 16 9 N -0.56 -28.83 5.29 -306.99 -1.62 -30.45 16 10 C 0.44 21.66 7.86 87.66 0.69 22.35 16 11 O -0.61 -34.58 16.08 15.73 0.25 -34.33 16 12 C 0.07 2.81 5.95 71.24 0.42 3.24 16 13 O -0.33 -12.94 9.00 -50.18 -0.45 -13.39 16 14 C 0.50 18.13 7.89 70.24 0.55 18.69 16 15 O -0.53 -21.04 15.77 24.72 0.39 -20.65 16 16 C -0.13 -3.92 5.88 -20.04 -0.12 -4.04 16 17 C -0.05 -1.22 9.61 22.54 0.22 -1.01 16 18 C -0.11 -1.48 10.02 22.22 0.22 -1.25 16 19 C -0.05 -0.69 10.05 22.39 0.22 -0.46 16 20 C 0.01 0.15 7.14 22.57 0.16 0.31 16 21 C 0.08 2.13 6.79 22.95 0.16 2.29 16 22 O -0.32 -8.64 10.57 -67.38 -0.71 -9.35 16 23 C 0.20 3.24 8.89 113.37 1.01 4.25 16 24 O -0.31 -5.92 11.41 -76.53 -0.87 -6.79 16 25 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 26 H 0.40 19.58 7.90 -92.70 -0.73 18.85 16 27 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 28 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 29 H 0.15 3.60 7.61 -2.91 -0.02 3.58 16 30 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 31 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.11 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.16 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -75.65 306.95 4.56 -71.09 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.45 Total: 22.40 kcal Atomic # 6 Polarization: 21.36 SS G_CDS: 4.82 Total: 26.18 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -1.34 Total: -79.13 kcal Atomic # 8 Polarization: -83.12 SS G_CDS: -1.39 Total: -84.51 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -75.65 4.56 -71.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.920 kcal (2) G-P(sol) polarization free energy of solvation -75.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds