Wall clock time and date at job start Fri Apr 10 2020 14:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86810 * 119.99716 * 2 1 4 4 H 1.48501 * 109.46991 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47067 * 300.00160 * 3 2 1 6 6 H 1.48501 * 109.46679 * 59.99907 * 3 2 1 7 7 C 1.38945 * 120.00526 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00421 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00127 * 0.02562 * 7 2 1 10 10 C 1.34769 * 120.00412 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99713 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00023 * 180.02562 * 10 9 7 13 13 O 1.45204 * 109.47261 * 179.97438 * 12 10 9 14 14 C 1.34700 * 117.00394 * 179.97438 * 13 12 10 15 15 O 1.21448 * 119.99867 * 359.97438 * 14 13 12 16 16 C 1.47846 * 120.00398 * 180.02562 * 14 13 12 17 17 C 1.39247 * 120.19859 * 353.83442 * 16 14 13 18 18 C 1.38227 * 119.99015 * 179.97438 * 17 16 14 19 19 C 1.38364 * 120.41319 * 0.02562 * 18 17 16 20 20 C 1.38224 * 120.41213 * 359.97407 * 19 18 17 21 21 C 1.39242 * 119.99256 * 0.02702 * 20 19 18 22 22 C 1.47847 * 120.20288 * 179.97438 * 21 20 19 23 23 O 1.21458 * 120.00027 * 124.94758 * 22 21 20 24 24 O 1.34700 * 120.00059 * 304.95151 * 22 21 20 25 25 H 0.96997 * 120.00327 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99625 * 359.97438 * 9 7 2 27 27 H 1.08994 * 109.47770 * 59.99645 * 12 10 9 28 28 H 1.09004 * 109.47183 * 299.99249 * 12 10 9 29 29 H 1.08001 * 120.00542 * 359.95991 * 17 16 14 30 30 H 1.08001 * 119.79040 * 180.02562 * 18 17 16 31 31 H 1.08004 * 119.79370 * 179.97438 * 19 18 17 32 32 H 1.08001 * 120.00569 * 179.74363 * 20 19 18 33 33 H 0.96703 * 117.00059 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8892 2.3966 -1.2125 6 1 1.8891 2.3965 1.2125 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5576 0.0001 12 6 1.2440 -4.8629 0.0000 13 8 2.1876 -5.9665 -0.0005 14 6 1.6729 -7.2113 -0.0006 15 8 0.4689 -7.3705 0.0003 16 6 2.5735 -8.3837 -0.0005 17 6 3.9491 -8.2103 -0.1296 18 6 4.7872 -9.3095 -0.1285 19 6 4.2684 -10.5858 -0.0001 20 6 2.9057 -10.7774 0.1292 21 6 2.0457 -9.6822 0.1301 22 6 0.5873 -9.8819 0.2676 23 8 -0.0234 -9.3116 1.1491 24 8 -0.0643 -10.6963 -0.5848 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3907 0.0005 27 1 0.6176 -4.9205 -0.8902 28 1 0.6171 -4.9209 0.8898 29 1 4.3611 -7.2171 -0.2309 30 1 5.8536 -9.1712 -0.2285 31 1 4.9325 -11.4375 -0.0008 32 1 2.5074 -11.7767 0.2249 33 1 -1.0176 -10.7950 -0.4556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739088932.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:35 Heat of formation + Delta-G solvation = -201.370977 kcal Electronic energy + Delta-G solvation = -22301.488703 eV Core-core repulsion = 18484.789879 eV Total energy + Delta-G solvation = -3816.698824 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.15142 -41.08337 -40.08880 -39.48149 -37.63791 -37.00450 -36.06564 -33.46361 -32.77702 -32.56659 -30.08295 -26.92257 -26.05383 -24.78860 -23.03659 -21.74106 -21.49071 -20.11150 -19.51321 -19.06172 -18.42492 -17.94978 -17.81962 -17.46871 -16.84422 -16.63966 -16.03997 -15.84396 -15.78971 -15.52239 -15.33539 -14.63491 -14.44525 -14.20858 -13.77301 -13.62159 -13.58525 -13.07399 -12.95890 -12.60722 -12.55381 -12.48680 -12.11055 -11.97467 -11.85952 -11.61212 -11.55678 -10.56365 -10.24718 -10.19839 -10.15039 -8.54641 -6.05869 -0.68500 0.00066 1.14839 1.23139 1.32149 1.34477 1.43030 1.58008 1.82341 1.97052 2.27740 2.59999 2.93513 3.10535 3.45342 3.66251 3.93905 3.95648 4.05205 4.06538 4.15109 4.23419 4.25844 4.57408 4.83169 5.02051 5.09269 5.20071 5.31371 5.35004 5.52965 5.69327 5.85659 6.37714 6.48452 6.90569 6.99487 7.35485 7.88094 8.62728 Molecular weight = 293.08amu Principal moments of inertia in cm(-1) A = 0.028569 B = 0.003196 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.840812 B = 8758.729249 C = 9635.726941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 1.001 2.999 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.556 5.556 10 C 0.439 3.561 11 O -0.614 6.614 12 C 0.072 3.928 13 O -0.333 6.333 14 C 0.490 3.510 15 O -0.515 6.515 16 C -0.108 4.108 17 C -0.070 4.070 18 C -0.095 4.095 19 C -0.069 4.069 20 C -0.078 4.078 21 C -0.077 4.077 22 C 0.527 3.473 23 O -0.522 6.522 24 O -0.501 6.501 25 H 0.281 0.719 26 H 0.399 0.601 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.141 0.859 30 H 0.175 0.825 31 H 0.188 0.812 32 H 0.172 0.828 33 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 -23.834 -1.736 24.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.823 3.177 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.105 0.895 9 N -0.194 5.194 10 C 0.225 3.775 11 O -0.500 6.500 12 C -0.005 4.005 13 O -0.248 6.248 14 C 0.336 3.664 15 O -0.405 6.405 16 C -0.109 4.109 17 C -0.088 4.088 18 C -0.113 4.113 19 C -0.087 4.087 20 C -0.095 4.095 21 C -0.079 4.079 22 C 0.370 3.630 23 O -0.411 6.411 24 O -0.315 6.315 25 H 0.091 0.909 26 H 0.234 0.766 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.159 0.841 30 H 0.192 0.808 31 H 0.205 0.795 32 H 0.189 0.811 33 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 6.142 -23.483 -1.554 24.323 hybrid contribution -1.563 1.276 0.182 2.026 sum 4.579 -22.207 -1.372 22.716 Atomic orbital electron populations 1.69683 1.07072 1.29756 1.49092 1.26179 0.96592 1.02726 0.95531 0.84763 0.78119 0.76338 0.78446 1.19347 1.19373 1.19477 1.19796 0.93027 0.83224 1.50672 0.89526 1.41741 1.09558 1.04187 1.63876 1.19930 0.88061 0.85127 0.84376 1.90513 1.15150 1.87607 1.56765 1.22544 0.90224 0.82552 1.05157 1.86553 1.40206 1.14354 1.83650 1.21874 0.87701 0.83958 0.72891 1.90874 1.16853 1.86694 1.46120 1.19002 0.94281 0.88456 1.09162 1.21713 0.90415 1.02132 0.94531 1.21883 1.02039 0.91309 0.96055 1.21979 0.94464 0.98829 0.93392 1.21649 0.93643 0.97735 0.96509 1.19119 0.90181 0.93551 1.05036 1.20944 0.88665 0.74831 0.78567 1.90923 1.69002 1.45824 1.35334 1.84533 1.30177 1.61833 1.54999 0.90919 0.76639 0.87609 0.88111 0.84083 0.80766 0.79508 0.81077 0.70760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.41 13.05 21.66 0.28 -49.13 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 1.00 42.32 29.55 68.60 2.03 44.35 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.34 -19.24 9.68 84.04 0.81 -18.43 16 8 H 0.09 5.19 7.16 -2.91 -0.02 5.17 16 9 N -0.56 -29.33 5.29 -307.00 -1.62 -30.95 16 10 C 0.44 22.16 7.86 87.66 0.69 22.85 16 11 O -0.61 -35.31 16.08 15.72 0.25 -35.05 16 12 C 0.07 2.97 5.95 71.23 0.42 3.39 16 13 O -0.33 -13.44 9.03 -49.71 -0.45 -13.89 16 14 C 0.49 18.11 7.80 70.37 0.55 18.66 16 15 O -0.52 -21.01 12.78 27.64 0.35 -20.66 16 16 C -0.11 -3.07 5.90 -19.87 -0.12 -3.19 16 17 C -0.07 -1.55 9.61 22.51 0.22 -1.33 16 18 C -0.10 -1.18 10.03 22.30 0.22 -0.96 16 19 C -0.07 -0.60 10.03 22.30 0.22 -0.38 16 20 C -0.08 -1.05 9.78 22.51 0.22 -0.83 16 21 C -0.08 -1.86 5.79 -19.87 -0.11 -1.98 16 22 C 0.53 14.45 6.41 70.37 0.45 14.90 16 23 O -0.52 -18.80 15.52 27.61 0.43 -18.38 16 24 O -0.50 -9.66 13.44 -56.10 -0.75 -10.41 16 25 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 26 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 27 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 28 H 0.10 3.87 8.14 -2.38 -0.02 3.85 16 29 H 0.14 3.47 7.62 -2.91 -0.02 3.45 16 30 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 31 H 0.19 -0.05 8.06 -2.91 -0.02 -0.08 16 32 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.43 4.74 9.11 -74.06 -0.67 4.06 16 Total: -1.00 -81.72 310.92 4.35 -77.37 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.21 Total: 24.08 kcal Atomic # 6 Polarization: 28.62 SS G_CDS: 4.04 Total: 32.67 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.34 Total: -80.08 kcal Atomic # 8 Polarization: -98.23 SS G_CDS: -0.17 Total: -98.39 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -81.72 4.35 -77.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088932.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.001 kcal (2) G-P(sol) polarization free energy of solvation -81.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds