Wall clock time and date at job start Fri Apr 10 2020 14:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00177 * 2 1 4 4 H 1.48499 * 109.46847 * 270.00134 * 3 2 1 5 5 H 1.48499 * 109.47054 * 29.99529 * 3 2 1 6 6 H 1.48493 * 109.47058 * 150.00117 * 3 2 1 7 7 C 1.37879 * 119.99648 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00262 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99573 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.46602 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99603 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00129 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00014 * 180.02562 * 11 10 9 14 14 N 1.46497 * 109.47289 * 179.97438 * 13 11 10 15 15 N 1.40582 * 127.39982 * 270.19197 * 14 13 11 16 16 N 1.28889 * 106.88459 * 180.02562 * 15 14 13 17 17 N 1.28418 * 110.41809 * 359.72426 * 16 15 14 18 18 C 1.31737 * 110.47486 * 0.46009 * 17 16 15 19 19 C 1.47829 * 126.48860 * 179.81734 * 18 17 16 20 20 C 1.39708 * 122.87912 * 342.49932 * 19 18 17 21 21 C 1.33107 * 113.73921 * 179.97438 * 20 19 18 22 22 S 1.75727 * 109.79451 * 0.02562 * 21 20 19 23 23 C 1.34622 * 122.87713 * 162.48264 * 19 18 17 24 24 H 0.97008 * 119.99862 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47129 * 59.99932 * 9 7 2 26 26 H 1.08993 * 109.46992 * 299.99717 * 9 7 2 27 27 H 0.96996 * 120.00300 * 0.02562 * 10 9 7 28 28 H 1.09003 * 109.47059 * 59.99530 * 13 11 10 29 29 H 1.09005 * 109.46685 * 299.99960 * 13 11 10 30 30 H 1.08002 * 123.12614 * 0.02562 * 20 19 18 31 31 H 1.08002 * 125.10149 * 180.26471 * 21 20 19 32 32 H 1.08001 * 124.75101 * 0.03468 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8217 -0.0001 12 8 6.1130 -1.8999 -0.0006 13 6 5.8271 -4.2425 -0.0008 14 7 7.2921 -4.2425 -0.0014 15 7 8.1455 -4.2384 -1.1185 16 7 9.3529 -4.2407 -0.6673 17 7 9.3512 -4.2400 0.6169 18 6 8.1164 -4.2471 1.0761 19 6 7.7068 -4.2526 2.4965 20 6 8.5735 -4.6038 3.5345 21 6 8.0154 -4.5454 4.7415 22 16 6.3403 -4.0340 4.5985 23 6 6.4667 -3.9193 2.9007 24 1 -0.4850 0.8401 -0.0004 25 1 3.8744 -0.6809 0.8905 26 1 3.8751 -0.6797 -0.8894 27 1 3.3694 -3.3126 -0.0009 28 1 5.4638 -4.7559 -0.8911 29 1 5.4637 -4.7567 0.8889 30 1 9.6009 -4.8947 3.3725 31 1 8.5179 -4.7739 5.6697 32 1 5.6639 -3.6215 2.2425 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843868518.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:50 Heat of formation + Delta-G solvation = 121.532311 kcal Electronic energy + Delta-G solvation = -20444.366829 eV Core-core repulsion = 17149.008516 eV Total energy + Delta-G solvation = -3295.358313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.97243 -39.52379 -38.41468 -35.16515 -34.58330 -32.59611 -32.29838 -29.86399 -29.76317 -27.65896 -25.29623 -23.30646 -22.75663 -21.98961 -20.46802 -19.69866 -18.20202 -18.02410 -17.41623 -16.62826 -16.09635 -15.77246 -15.57445 -15.13489 -14.24053 -14.16099 -13.78746 -13.53170 -13.49346 -13.28815 -12.85568 -12.61230 -12.50595 -12.36245 -11.93344 -11.24941 -11.21582 -11.15419 -10.96394 -10.91452 -10.58573 -10.12565 -9.69271 -9.61237 -9.28527 -8.96563 -8.66281 -8.52679 -6.36198 -4.40541 0.25652 1.02934 1.20445 1.56820 1.65971 1.98804 2.59637 2.73544 3.16252 3.23382 3.30357 3.42274 3.85757 4.05801 4.19890 4.41964 4.62004 4.69592 4.82095 4.99015 5.00400 5.13163 5.26542 5.40498 5.62084 5.83148 5.88705 6.06777 6.53879 6.80619 6.82803 7.14146 7.79232 8.20921 8.37484 8.45597 8.61773 9.22220 10.75264 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.016343 B = 0.004628 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.847732 B = 6048.738135 C = 7139.092641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.082 3.918 3 Si 0.874 3.126 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.221 3.779 10 N -0.693 5.693 11 C 0.480 3.520 12 O -0.532 6.532 13 C 0.091 3.909 14 N -0.355 5.355 15 N -0.070 5.070 16 N -0.041 5.041 17 N -0.325 5.325 18 C 0.321 3.679 19 C -0.052 4.052 20 C -0.093 4.093 21 C -0.233 4.233 22 S 0.225 5.775 23 C -0.227 4.227 24 H 0.270 0.730 25 H 0.029 0.971 26 H 0.025 0.975 27 H 0.401 0.599 28 H 0.140 0.860 29 H 0.132 0.868 30 H 0.157 0.843 31 H 0.175 0.825 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.924 -12.603 9.838 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.123 4.123 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.587 4.587 8 H 0.100 0.900 9 C 0.099 3.901 10 N -0.343 5.343 11 C 0.262 3.738 12 O -0.409 6.409 13 C -0.035 4.035 14 N -0.151 5.151 15 N -0.056 5.056 16 N -0.036 5.036 17 N -0.177 5.177 18 C 0.044 3.956 19 C -0.070 4.070 20 C -0.123 4.123 21 C -0.369 4.369 22 S 0.491 5.509 23 C -0.368 4.368 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.235 0.765 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.175 0.825 31 H 0.192 0.808 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.108 -11.530 9.795 18.769 hybrid contribution 0.160 0.469 -0.818 0.957 sum 11.268 -11.061 8.976 18.163 Atomic orbital electron populations 1.69863 1.06190 1.27656 1.48664 1.24760 0.94779 0.99122 0.93640 0.86856 0.80511 0.83335 0.79242 1.19708 1.20668 1.18613 1.21005 0.88069 0.95385 1.54254 0.90014 1.19614 0.95621 0.77595 0.97223 1.46165 1.04627 1.11940 1.71548 1.20351 0.84283 0.89816 0.79387 1.90786 1.55284 1.45139 1.49672 1.22109 0.74546 0.98710 1.08176 1.51107 1.08209 1.51116 1.04645 1.82535 0.94983 1.21162 1.06872 1.77916 1.12698 1.10117 1.02871 1.74752 1.16935 1.23095 1.02956 1.22940 0.86551 0.96191 0.89951 1.16492 0.93845 1.08925 0.87774 1.20089 1.01252 1.00928 0.90010 1.25734 0.98767 1.10250 1.02131 1.83353 1.08953 1.60998 0.97584 1.25504 1.01195 1.07101 1.02992 0.92040 0.95348 0.95752 0.76484 0.84265 0.85020 0.82505 0.80794 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 13.96 55.43 0.77 -24.32 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.87 20.53 27.47 -169.99 -4.67 15.86 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.55 -13.95 9.83 -34.44 -0.34 -14.28 16 8 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 9 C 0.22 4.97 4.50 -5.19 -0.02 4.95 16 10 N -0.69 -11.95 5.55 -61.47 -0.34 -12.29 16 11 C 0.48 8.02 6.56 -10.98 -0.07 7.94 16 12 O -0.53 -11.52 16.43 5.56 0.09 -11.43 16 13 C 0.09 1.08 6.16 -5.20 -0.03 1.05 16 14 N -0.36 -5.36 3.19 -59.99 -0.19 -5.55 16 15 N -0.07 -1.21 13.92 60.35 0.84 -0.37 16 16 N -0.04 -0.73 13.37 60.35 0.81 0.08 16 17 N -0.33 -5.43 12.15 32.31 0.39 -5.04 16 18 C 0.32 4.82 7.87 -155.16 -1.22 3.60 16 19 C -0.05 -0.63 5.78 -106.70 -0.62 -1.25 16 20 C -0.09 -0.91 10.06 -40.82 -0.41 -1.32 16 21 C -0.23 -1.78 11.20 28.95 0.32 -1.46 16 22 S 0.23 1.88 23.09 -107.50 -2.48 -0.60 16 23 C -0.23 -2.53 9.54 29.45 0.28 -2.25 16 24 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 26 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 27 H 0.40 5.61 8.32 -40.82 -0.34 5.27 16 28 H 0.14 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.13 1.08 6.04 -51.93 -0.31 0.77 16 30 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.17 1.94 4.54 -52.49 -0.24 1.70 16 LS Contribution 300.92 15.07 4.53 4.53 Total: -1.00 -33.91 300.92 -4.96 -38.86 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -2.50 Total: 1.19 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.21 Total: -0.92 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 2.28 Total: -47.50 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.48 Total: -0.60 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.91 -4.96 -38.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843868518.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.395 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds