Wall clock time and date at job start Fri Apr 10 2020 14:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00177 * 2 1 4 4 H 1.48499 * 109.46847 * 270.00134 * 3 2 1 5 5 H 1.48499 * 109.47054 * 29.99529 * 3 2 1 6 6 H 1.48493 * 109.47058 * 150.00117 * 3 2 1 7 7 C 1.37879 * 119.99648 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00262 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99573 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.46602 * 179.97438 * 9 7 2 11 11 C 1.34780 * 119.99603 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00129 * 359.97438 * 11 10 9 13 13 C 1.50698 * 120.00014 * 180.02562 * 11 10 9 14 14 N 1.46497 * 109.47289 * 179.97438 * 13 11 10 15 15 N 1.40582 * 127.39982 * 270.19197 * 14 13 11 16 16 N 1.28889 * 106.88459 * 180.02562 * 15 14 13 17 17 N 1.28418 * 110.41809 * 359.72426 * 16 15 14 18 18 C 1.31737 * 110.47486 * 0.46009 * 17 16 15 19 19 C 1.47829 * 126.48860 * 179.81734 * 18 17 16 20 20 C 1.39708 * 122.87912 * 342.49932 * 19 18 17 21 21 C 1.33107 * 113.73921 * 179.97438 * 20 19 18 22 22 S 1.75727 * 109.79451 * 0.02562 * 21 20 19 23 23 C 1.34622 * 122.87713 * 162.48264 * 19 18 17 24 24 H 0.97008 * 119.99862 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47129 * 59.99932 * 9 7 2 26 26 H 1.08993 * 109.46992 * 299.99717 * 9 7 2 27 27 H 0.96996 * 120.00300 * 0.02562 * 10 9 7 28 28 H 1.09003 * 109.47059 * 59.99530 * 13 11 10 29 29 H 1.09005 * 109.46685 * 299.99960 * 13 11 10 30 30 H 1.08002 * 123.12614 * 0.02562 * 20 19 18 31 31 H 1.08002 * 125.10149 * 180.26471 * 21 20 19 32 32 H 1.08001 * 124.75101 * 0.03468 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8217 -0.0001 12 8 6.1130 -1.8999 -0.0006 13 6 5.8271 -4.2425 -0.0008 14 7 7.2921 -4.2425 -0.0014 15 7 8.1455 -4.2384 -1.1185 16 7 9.3529 -4.2407 -0.6673 17 7 9.3512 -4.2400 0.6169 18 6 8.1164 -4.2471 1.0761 19 6 7.7068 -4.2526 2.4965 20 6 8.5735 -4.6038 3.5345 21 6 8.0154 -4.5454 4.7415 22 16 6.3403 -4.0340 4.5985 23 6 6.4667 -3.9193 2.9007 24 1 -0.4850 0.8401 -0.0004 25 1 3.8744 -0.6809 0.8905 26 1 3.8751 -0.6797 -0.8894 27 1 3.3694 -3.3126 -0.0009 28 1 5.4638 -4.7559 -0.8911 29 1 5.4637 -4.7567 0.8889 30 1 9.6009 -4.8947 3.3725 31 1 8.5179 -4.7739 5.6697 32 1 5.6639 -3.6215 2.2425 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843868518.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:12:50 Heat of formation + Delta-G solvation = 95.863897 kcal Electronic energy + Delta-G solvation = -20445.479895 eV Core-core repulsion = 17149.008516 eV Total energy + Delta-G solvation = -3296.471379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -44.15554 -40.94005 -39.23531 -36.53825 -36.04866 -34.51986 -33.43102 -31.21315 -30.64268 -29.24687 -26.27693 -24.69105 -24.03502 -23.30736 -21.89170 -20.56127 -19.58245 -18.98214 -18.57627 -18.29459 -17.19365 -17.02930 -16.84032 -16.69009 -15.91994 -15.21606 -14.92937 -14.85759 -14.46848 -14.42287 -14.34152 -13.99758 -13.71914 -13.45173 -13.14045 -13.01535 -12.76799 -12.41180 -12.19671 -11.99101 -11.91404 -11.71258 -11.68499 -11.05565 -10.95606 -10.16677 -10.00924 -9.43392 -8.42459 -6.49231 -0.70349 0.07154 0.43354 0.63070 0.87661 0.94470 1.26572 1.30816 1.33878 1.43136 1.76878 2.11818 2.24432 2.86358 2.93470 3.05617 3.45551 3.58423 3.72536 3.87591 4.15675 4.22965 4.29807 4.40895 4.68902 4.85517 4.94545 4.94942 5.15183 5.19011 5.24110 5.28821 6.01252 6.47934 6.59331 7.02342 7.20502 7.23556 8.71721 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.016343 B = 0.004628 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.847732 B = 6048.738135 C = 7139.092641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.033 3.967 3 Si 0.927 3.073 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.232 3.768 10 N -0.686 5.686 11 C 0.487 3.513 12 O -0.583 6.583 13 C 0.096 3.904 14 N -0.358 5.358 15 N -0.091 5.091 16 N -0.059 5.059 17 N -0.345 5.345 18 C 0.323 3.677 19 C -0.071 4.071 20 C -0.112 4.112 21 C -0.213 4.213 22 S 0.272 5.728 23 C -0.246 4.246 24 H 0.272 0.728 25 H 0.018 0.982 26 H 0.009 0.991 27 H 0.418 0.582 28 H 0.175 0.825 29 H 0.174 0.826 30 H 0.161 0.839 31 H 0.209 0.791 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.176 -13.541 11.609 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.168 4.168 3 Si 0.752 3.248 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.087 0.913 9 C 0.108 3.892 10 N -0.337 5.337 11 C 0.271 3.729 12 O -0.463 6.463 13 C -0.029 4.029 14 N -0.154 5.154 15 N -0.077 5.077 16 N -0.054 5.054 17 N -0.198 5.198 18 C 0.047 3.953 19 C -0.090 4.090 20 C -0.141 4.141 21 C -0.349 4.349 22 S 0.538 5.462 23 C -0.387 4.387 24 H 0.082 0.918 25 H 0.036 0.964 26 H 0.027 0.973 27 H 0.256 0.744 28 H 0.193 0.807 29 H 0.192 0.808 30 H 0.178 0.822 31 H 0.226 0.774 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.344 -12.512 11.570 20.472 hybrid contribution 0.034 0.710 -1.247 1.435 sum 11.378 -11.802 10.323 19.373 Atomic orbital electron populations 1.69954 1.07516 1.28562 1.50457 1.25462 0.95379 1.02185 0.93741 0.86015 0.79370 0.80215 0.79215 1.19576 1.19845 1.18593 1.21229 0.89494 0.94806 1.52639 0.91271 1.19173 0.93706 0.80301 0.95982 1.45858 1.05586 1.10547 1.71682 1.20999 0.83219 0.91386 0.77328 1.90770 1.56411 1.47384 1.51728 1.22380 0.73027 0.95456 1.12004 1.51228 1.09015 1.51022 1.04142 1.82432 0.95234 1.21950 1.08064 1.77873 1.13225 1.10727 1.03560 1.74678 1.18249 1.24161 1.02671 1.23469 0.86098 0.94596 0.91123 1.16680 0.94891 1.10766 0.86693 1.20160 1.01480 1.02235 0.90200 1.26141 0.98405 1.07726 1.02630 1.83257 1.08910 1.59163 0.94828 1.25598 1.00680 1.07468 1.04961 0.91820 0.96376 0.97275 0.74411 0.80733 0.80847 0.82156 0.77438 0.82103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.53 13.96 21.45 0.30 -52.23 16 2 C 0.03 1.78 5.47 84.66 0.46 2.24 16 3 Si 0.93 42.16 27.47 68.60 1.88 44.04 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.26 -11.78 6.54 99.48 0.65 -11.13 16 7 C -0.54 -27.42 9.83 25.60 0.25 -27.17 16 8 H 0.07 3.59 7.84 -2.91 -0.02 3.57 16 9 C 0.23 10.29 4.50 85.63 0.38 10.68 16 10 N -0.69 -22.70 5.55 -466.78 -2.59 -25.29 16 11 C 0.49 15.60 6.56 87.66 0.57 16.18 16 12 O -0.58 -25.11 16.43 -3.03 -0.05 -25.16 16 13 C 0.10 2.07 6.16 85.63 0.53 2.59 16 14 N -0.36 -10.44 3.19 -343.71 -1.10 -11.54 16 15 N -0.09 -3.13 13.92 37.02 0.52 -2.62 16 16 N -0.06 -2.11 13.37 37.02 0.50 -1.62 16 17 N -0.34 -11.55 12.15 -51.70 -0.63 -12.17 16 18 C 0.32 9.51 7.87 136.69 1.08 10.59 16 19 C -0.07 -1.62 5.78 -21.21 -0.12 -1.74 16 20 C -0.11 -1.97 10.06 21.47 0.22 -1.75 16 21 C -0.21 -2.52 11.20 66.67 0.75 -1.77 16 22 S 0.27 3.68 23.09 -56.49 -1.30 2.38 16 23 C -0.25 -4.95 9.54 66.99 0.64 -4.31 16 24 H 0.27 14.51 8.31 -92.70 -0.77 13.73 16 25 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 26 H 0.01 0.44 7.57 -2.39 -0.02 0.43 16 27 H 0.42 10.87 8.32 -92.71 -0.77 10.10 16 28 H 0.18 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.17 2.28 6.04 -2.38 -0.01 2.27 16 30 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 31 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 32 H 0.16 3.39 4.54 -2.91 -0.01 3.38 16 Total: -1.00 -74.80 300.92 2.65 -72.14 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 0.37 Total: 6.52 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 4.76 Total: 5.53 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -3.00 Total: -105.46 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.05 Total: -25.16 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.04 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.30 Total: 2.38 kcal Total: -74.80 2.65 -72.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843868518.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.008 kcal (2) G-P(sol) polarization free energy of solvation -74.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds