Wall clock time and date at job start Fri Apr 10 2020 14:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00217 * 2 1 4 4 H 1.48497 * 109.47375 * 240.00077 * 3 2 1 5 5 H 1.48502 * 109.47363 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47158 * 120.00239 * 3 2 1 7 7 C 1.37882 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00389 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99629 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47550 * 64.99819 * 12 11 10 14 14 C 1.34227 * 117.00087 * 179.97438 * 13 12 11 15 15 O 1.20821 * 120.00216 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99644 * 179.97438 * 14 13 12 17 17 H 1.08999 * 108.58131 * 40.70892 * 16 14 13 18 18 C 1.53204 * 108.64730 * 282.70629 * 16 14 13 19 19 C 1.55354 * 106.34134 * 211.21629 * 18 16 14 20 20 S 1.83902 * 99.54239 * 37.18605 * 19 18 16 21 21 O 1.42097 * 111.46300 * 215.81403 * 20 19 18 22 22 O 1.42098 * 111.61542 * 75.80824 * 20 19 18 23 23 N 1.46454 * 108.64224 * 158.70238 * 16 14 13 24 24 H 0.97000 * 119.99632 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46405 * 60.00391 * 9 7 2 26 26 H 1.09004 * 109.47198 * 300.00876 * 9 7 2 27 27 H 1.09002 * 109.47382 * 59.99956 * 11 10 9 28 28 H 1.09001 * 109.46938 * 299.99942 * 11 10 9 29 29 H 1.09002 * 109.46642 * 184.99995 * 12 11 10 30 30 H 1.09002 * 109.47069 * 304.99524 * 12 11 10 31 31 H 1.09000 * 110.10136 * 330.53691 * 18 16 14 32 32 H 1.09000 * 110.09978 * 92.15298 * 18 16 14 33 33 H 1.08993 * 111.49715 * 279.58472 * 19 18 16 34 34 H 1.09004 * 111.36957 * 154.73870 * 19 18 16 35 35 H 0.96991 * 126.08375 * 302.79572 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5649 -4.8755 -0.0011 12 6 2.6479 -5.9563 -0.0004 13 8 3.3983 -5.8888 1.2407 14 6 4.3922 -6.7766 1.4009 15 8 4.6277 -7.5831 0.5326 16 6 5.2151 -6.7667 2.6634 17 1 4.5503 -6.5952 3.5100 18 6 6.2175 -5.6107 2.5857 19 6 7.4724 -6.0662 3.3802 20 16 7.4996 -7.8448 2.9137 21 8 7.9365 -8.6589 3.9933 22 8 7.9817 -8.0316 1.5901 23 7 5.8457 -8.0790 2.8216 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 0.9450 -4.9823 -0.8913 28 1 0.9445 -4.9827 0.8886 29 1 2.1818 -6.9375 -0.0904 30 1 3.3220 -5.7957 -0.8418 31 1 6.4818 -5.4133 1.5469 32 1 5.7935 -4.7159 3.0415 33 1 7.3333 -5.9392 4.4537 34 1 8.3692 -5.5514 3.0353 35 1 5.3862 -8.9320 2.8656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328669393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:14 Heat of formation + Delta-G solvation = -193.338877 kcal Electronic energy + Delta-G solvation = -21398.715352 eV Core-core repulsion = 17717.808778 eV Total energy + Delta-G solvation = -3680.906574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72555 -37.85238 -37.32058 -36.75692 -36.21103 -35.99431 -32.83070 -32.27041 -30.37008 -27.87966 -26.87930 -23.54666 -22.51933 -22.15760 -20.99165 -20.01894 -18.29723 -18.13084 -16.94706 -16.82867 -16.57321 -16.34503 -15.96300 -15.37788 -15.16171 -14.72511 -14.45475 -14.14886 -13.91211 -13.70729 -13.36284 -12.73358 -12.65838 -12.42713 -12.31767 -12.29095 -12.02602 -11.82612 -11.49964 -11.04287 -10.96840 -10.90467 -10.83183 -10.73126 -10.48426 -10.12830 -9.86074 -9.20484 -8.93829 -8.27724 -6.17314 -4.19501 -0.15819 1.94516 2.10199 2.62875 3.20875 3.27646 3.30959 3.34193 3.40141 3.79987 4.05150 4.26522 4.35469 4.53808 4.64981 4.73444 4.89899 5.05273 5.13478 5.19312 5.23798 5.37832 5.43530 5.78303 5.85417 5.99124 6.43825 6.59606 6.98932 7.33385 7.66421 7.71888 8.06384 8.45327 8.92396 9.45449 10.94171 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.023715 B = 0.003188 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.391784 B = 8780.315542 C = 9622.959969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.073 3.927 13 O -0.338 6.338 14 C 0.444 3.556 15 O -0.492 6.492 16 C 0.128 3.872 17 H 0.124 0.876 18 C -0.119 4.119 19 C -0.586 4.586 20 S 2.570 3.430 21 O -0.956 6.956 22 O -0.941 6.941 23 N -1.080 6.080 24 H 0.265 0.735 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.677 -13.699 8.346 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.000 4.000 13 O -0.254 6.254 14 C 0.283 3.717 15 O -0.379 6.379 16 C 0.017 3.983 17 H 0.142 0.858 18 C -0.158 4.158 19 C -0.717 4.717 20 S 2.664 3.336 21 O -0.945 6.945 22 O -0.930 6.930 23 N -0.846 5.846 24 H 0.075 0.925 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 11.544 -14.393 7.880 20.063 hybrid contribution -0.762 0.999 -0.087 1.259 sum 10.782 -13.395 7.793 18.879 Atomic orbital electron populations 1.69948 1.06131 1.27384 1.50281 1.24952 0.94987 0.99471 0.95048 0.86376 0.79304 0.81811 0.78857 1.19989 1.21141 1.19981 1.21000 0.94047 0.89280 1.51200 0.91539 1.20236 0.88726 0.83436 0.95525 1.87906 1.35364 1.12606 1.95241 1.22325 0.93192 0.85430 1.00665 1.23274 0.93726 0.98934 0.84076 1.86589 1.43180 1.53783 1.41804 1.23876 0.79841 0.78918 0.89035 1.90703 1.67110 1.37580 1.42468 1.20766 0.96741 0.84658 0.96123 0.85818 1.22365 0.91647 0.98246 1.03567 1.30751 1.06109 1.24142 1.10658 1.06515 0.73437 0.78265 0.75373 1.93626 1.79732 1.65274 1.55897 1.93695 1.78444 1.84051 1.36780 1.54896 1.27046 1.11364 1.91273 0.92520 0.97609 0.97492 0.91848 0.93137 0.90325 0.90291 0.87695 0.84820 0.83328 0.83363 0.72034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.91 21.17 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.74 9.43 -34.44 -0.32 -15.06 16 8 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 9 C 0.19 5.13 5.69 36.01 0.20 5.34 16 10 O -0.39 -8.98 10.30 -38.80 -0.40 -9.38 16 11 C 0.06 1.05 6.33 37.16 0.24 1.29 16 12 C 0.07 1.08 5.84 37.16 0.22 1.30 16 13 O -0.34 -4.94 10.19 -42.02 -0.43 -5.37 16 14 C 0.44 5.75 6.94 36.01 0.25 6.00 16 15 O -0.49 -7.74 16.27 -18.75 -0.31 -8.04 16 16 C 0.13 1.09 3.66 -69.00 -0.25 0.84 16 17 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 18 C -0.12 -0.84 6.04 -25.38 -0.15 -0.99 16 19 C -0.59 -2.91 7.65 38.41 0.29 -2.62 16 20 S 2.57 22.68 6.47 -107.50 -0.70 21.98 16 21 O -0.96 -10.93 18.14 -57.40 -1.04 -11.97 16 22 O -0.94 -12.48 18.14 -57.40 -1.04 -13.53 16 23 N -1.08 -9.10 6.14 -5.82 -0.04 -9.13 16 24 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.08 1.20 8.13 -51.93 -0.42 0.78 16 31 H 0.10 0.85 7.82 -51.93 -0.41 0.45 16 32 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.15 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.15 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.44 3.18 8.96 -40.36 -0.36 2.82 16 LS Contribution 321.16 15.07 4.84 4.84 Total: -1.00 -38.50 321.16 -7.56 -46.05 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -4.54 Total: -3.75 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 0.37 Total: -2.42 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.70 Total: -34.57 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -3.22 Total: -48.29 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 22.68 SS G_CDS: -0.70 Total: 21.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -38.50 -7.56 -46.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328669393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.286 kcal (2) G-P(sol) polarization free energy of solvation -38.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds