Wall clock time and date at job start Fri Apr 10 2020 14:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00217 * 2 1 4 4 H 1.48497 * 109.47375 * 240.00077 * 3 2 1 5 5 H 1.48502 * 109.47363 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47158 * 120.00239 * 3 2 1 7 7 C 1.37882 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99908 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00389 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47140 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99629 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46726 * 180.02562 * 11 10 9 13 13 O 1.45194 * 109.47550 * 64.99819 * 12 11 10 14 14 C 1.34227 * 117.00087 * 179.97438 * 13 12 11 15 15 O 1.20821 * 120.00216 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99644 * 179.97438 * 14 13 12 17 17 H 1.08999 * 108.58131 * 40.70892 * 16 14 13 18 18 C 1.53204 * 108.64730 * 282.70629 * 16 14 13 19 19 C 1.55354 * 106.34134 * 211.21629 * 18 16 14 20 20 S 1.83902 * 99.54239 * 37.18605 * 19 18 16 21 21 O 1.42097 * 111.46300 * 215.81403 * 20 19 18 22 22 O 1.42098 * 111.61542 * 75.80824 * 20 19 18 23 23 N 1.46454 * 108.64224 * 158.70238 * 16 14 13 24 24 H 0.97000 * 119.99632 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46405 * 60.00391 * 9 7 2 26 26 H 1.09004 * 109.47198 * 300.00876 * 9 7 2 27 27 H 1.09002 * 109.47382 * 59.99956 * 11 10 9 28 28 H 1.09001 * 109.46938 * 299.99942 * 11 10 9 29 29 H 1.09002 * 109.46642 * 184.99995 * 12 11 10 30 30 H 1.09002 * 109.47069 * 304.99524 * 12 11 10 31 31 H 1.09000 * 110.10136 * 330.53691 * 18 16 14 32 32 H 1.09000 * 110.09978 * 92.15298 * 18 16 14 33 33 H 1.08993 * 111.49715 * 279.58472 * 19 18 16 34 34 H 1.09004 * 111.36957 * 154.73870 * 19 18 16 35 35 H 0.96991 * 126.08375 * 302.79572 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 2.1796 -3.5854 -0.0005 11 6 1.5649 -4.8755 -0.0011 12 6 2.6479 -5.9563 -0.0004 13 8 3.3983 -5.8888 1.2407 14 6 4.3922 -6.7766 1.4009 15 8 4.6277 -7.5831 0.5326 16 6 5.2151 -6.7667 2.6634 17 1 4.5503 -6.5952 3.5100 18 6 6.2175 -5.6107 2.5857 19 6 7.4724 -6.0662 3.3802 20 16 7.4996 -7.8448 2.9137 21 8 7.9365 -8.6589 3.9933 22 8 7.9817 -8.0316 1.5901 23 7 5.8457 -8.0790 2.8216 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 0.9450 -4.9823 -0.8913 28 1 0.9445 -4.9827 0.8886 29 1 2.1818 -6.9375 -0.0904 30 1 3.3220 -5.7957 -0.8418 31 1 6.4818 -5.4133 1.5469 32 1 5.7935 -4.7159 3.0415 33 1 7.3333 -5.9392 4.4537 34 1 8.3692 -5.5514 3.0353 35 1 5.3862 -8.9320 2.8656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328669393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:13 Heat of formation + Delta-G solvation = -225.211052 kcal Electronic energy + Delta-G solvation = -21400.097433 eV Core-core repulsion = 17717.808778 eV Total energy + Delta-G solvation = -3682.288655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75881 -38.96235 -38.30038 -37.94031 -37.19530 -36.96525 -34.91935 -32.86294 -31.77800 -29.20684 -28.33443 -24.61548 -24.28636 -23.33872 -21.96107 -20.70080 -19.18358 -18.95612 -18.63091 -17.89808 -17.65506 -17.64324 -17.02128 -16.70189 -16.39278 -16.20166 -15.79185 -15.33225 -14.73476 -14.68661 -14.24412 -14.10038 -13.67521 -13.61484 -13.30781 -13.21102 -13.12667 -12.98140 -12.90378 -12.66913 -12.46685 -12.43071 -12.01652 -11.75695 -11.74513 -11.50613 -11.27083 -10.87447 -10.63322 -10.24709 -8.29758 -6.41882 -0.80229 1.00987 1.30430 1.43836 1.47859 1.56284 1.74538 2.36788 2.57280 2.78134 3.04751 3.07191 3.20695 3.43946 3.56195 3.92631 3.95369 4.10643 4.14323 4.30433 4.42632 4.52660 4.62347 4.67758 4.79450 4.88355 4.93070 5.20039 5.36430 5.56992 5.96657 5.97603 6.51523 6.63113 6.81721 7.29844 8.82186 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.023715 B = 0.003188 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.391784 B = 8780.315542 C = 9622.959969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.208 3.792 10 O -0.406 6.406 11 C 0.054 3.946 12 C 0.076 3.924 13 O -0.349 6.349 14 C 0.442 3.558 15 O -0.527 6.527 16 C 0.129 3.871 17 H 0.161 0.839 18 C -0.127 4.127 19 C -0.542 4.542 20 S 2.563 3.437 21 O -0.987 6.987 22 O -0.997 6.997 23 N -1.079 6.079 24 H 0.271 0.729 25 H -0.011 1.011 26 H -0.009 1.009 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.159 0.841 33 H 0.186 0.814 34 H 0.175 0.825 35 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.441 -12.243 9.823 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.587 4.587 8 H 0.082 0.918 9 C 0.133 3.867 10 O -0.326 6.326 11 C -0.022 4.022 12 C 0.003 3.997 13 O -0.264 6.264 14 C 0.283 3.717 15 O -0.415 6.415 16 C 0.018 3.982 17 H 0.178 0.822 18 C -0.166 4.166 19 C -0.677 4.677 20 S 2.662 3.338 21 O -0.977 6.977 22 O -0.986 6.986 23 N -0.845 5.845 24 H 0.079 0.921 25 H 0.006 0.994 26 H 0.009 0.991 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.124 0.876 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.177 0.823 33 H 0.204 0.796 34 H 0.193 0.807 35 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 12.314 -13.011 9.354 20.210 hybrid contribution -1.054 0.500 -0.538 1.285 sum 11.260 -12.511 8.816 19.001 Atomic orbital electron populations 1.70058 1.07769 1.28716 1.50472 1.25938 0.95920 1.03341 0.93936 0.85250 0.78093 0.76739 0.79443 1.19230 1.20301 1.18637 1.21373 0.94231 0.90774 1.52297 0.91781 1.19862 0.88567 0.84402 0.93833 1.87850 1.35398 1.14061 1.95327 1.22624 0.94410 0.83351 1.01851 1.23187 0.93205 0.99123 0.84205 1.86588 1.43805 1.54563 1.41431 1.24855 0.79162 0.77652 0.90010 1.90691 1.67903 1.38882 1.44055 1.21145 0.97248 0.85058 0.94734 0.82160 1.22530 0.92157 0.98406 1.03515 1.30622 1.06328 1.18042 1.12665 1.06528 0.73025 0.80366 0.73925 1.93581 1.80211 1.67895 1.56042 1.93627 1.79467 1.86025 1.39517 1.54861 1.26886 1.11814 1.90905 0.92066 0.99358 0.99104 0.90413 0.92204 0.87617 0.91211 0.89158 0.82338 0.79631 0.80738 0.71726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.23 13.29 21.45 0.28 -53.94 16 2 C 0.01 0.40 5.46 84.66 0.46 0.87 16 3 Si 0.98 42.53 29.54 68.60 2.03 44.55 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.55 -31.40 9.43 25.60 0.24 -31.15 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.21 11.14 5.69 71.24 0.41 11.55 16 10 O -0.41 -18.71 10.30 -145.57 -1.50 -20.21 16 11 C 0.05 1.84 6.33 71.98 0.46 2.29 16 12 C 0.08 2.19 5.84 71.98 0.42 2.61 16 13 O -0.35 -9.78 10.19 -48.74 -0.50 -10.28 16 14 C 0.44 11.01 6.94 71.24 0.49 11.51 16 15 O -0.53 -16.60 16.27 21.98 0.36 -16.24 16 16 C 0.13 1.92 3.66 44.32 0.16 2.08 16 17 H 0.16 1.27 8.14 -2.39 -0.02 1.25 16 18 C -0.13 -1.40 6.04 31.47 0.19 -1.21 16 19 C -0.54 -3.31 7.65 72.79 0.56 -2.76 16 20 S 2.56 43.28 6.47 -56.49 -0.37 42.91 16 21 O -0.99 -22.17 18.14 -127.79 -2.32 -24.49 16 22 O -1.00 -27.28 18.14 -127.79 -2.32 -29.60 16 23 N -1.08 -17.09 6.14 -172.31 -1.06 -18.15 16 24 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 25 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 26 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.11 2.46 8.13 -2.39 -0.02 2.44 16 30 H 0.07 2.12 8.13 -2.39 -0.02 2.10 16 31 H 0.09 1.32 7.82 -2.39 -0.02 1.30 16 32 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.19 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.17 0.34 8.14 -2.38 -0.02 0.32 16 35 H 0.44 6.27 8.96 -93.01 -0.83 5.44 16 Total: -1.00 -85.00 321.16 -1.72 -86.72 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 0.28 Total: 2.95 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 3.39 Total: -4.22 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -0.77 Total: -72.09 kcal Atomic # 8 Polarization: -94.54 SS G_CDS: -6.27 Total: -100.82 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: 43.28 SS G_CDS: -0.37 Total: 42.91 kcal Total: -85.00 -1.72 -86.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328669393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.491 kcal (2) G-P(sol) polarization free energy of solvation -85.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds