Wall clock time and date at job start Fri Apr 10 2020 14:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37102 * 120.00164 * 2 1 4 4 H 1.07999 * 120.00285 * 202.40899 * 3 2 1 5 5 C 1.38949 * 119.99650 * 22.41105 * 3 2 1 6 6 N 1.31413 * 119.99970 * 11.59096 * 5 3 2 7 7 Si 1.86795 * 119.99894 * 191.58887 * 5 3 2 8 8 H 1.48501 * 109.47207 * 60.00296 * 7 5 3 9 9 H 1.48506 * 109.47390 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47540 * 300.00118 * 7 5 3 11 11 C 1.34776 * 119.99984 * 180.02562 * 2 1 3 12 12 O 1.21298 * 119.99892 * 180.02562 * 11 2 1 13 13 C 1.50698 * 120.00217 * 359.97438 * 11 2 1 14 14 S 1.81405 * 109.47324 * 179.97438 * 13 11 2 15 15 C 1.81405 * 102.99995 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.46823 * 180.02562 * 15 14 13 17 17 O 1.21253 * 119.99973 * 359.97438 * 16 15 14 18 18 C 1.47172 * 119.99696 * 179.97438 * 16 15 14 19 19 C 1.39850 * 120.17122 * 180.02562 * 18 16 15 20 20 C 1.37885 * 119.82620 * 179.97438 * 19 18 16 21 21 C 1.38407 * 120.17014 * 359.97438 * 20 19 18 22 22 C 1.38409 * 120.34714 * 0.03995 * 21 20 19 23 23 C 1.37887 * 120.17496 * 359.95549 * 22 21 20 24 24 H 1.09005 * 109.46637 * 272.15678 * 1 2 3 25 25 H 1.08997 * 109.47057 * 32.16053 * 1 2 3 26 26 H 1.08997 * 109.46786 * 152.16221 * 1 2 3 27 27 H 0.97003 * 119.99598 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.46705 * 60.00017 * 13 11 2 29 29 H 1.08999 * 109.47239 * 300.00330 * 13 11 2 30 30 H 1.09000 * 109.46712 * 59.99759 * 15 14 13 31 31 H 1.09001 * 109.46715 * 300.00146 * 15 14 13 32 32 H 1.07999 * 120.08546 * 359.69993 * 19 18 16 33 33 H 1.07994 * 119.91296 * 179.97438 * 20 19 18 34 34 H 1.07994 * 119.82514 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.90898 * 179.97438 * 22 21 20 36 36 H 1.07996 * 120.08506 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1694 1.2227 -0.3565 5 6 1.5345 2.3452 0.4588 6 7 0.3896 2.2706 1.0996 7 14 2.3336 4.0077 0.1647 8 1 2.4815 4.2345 -1.2955 9 1 1.4831 5.0761 0.7483 10 1 3.6719 4.0345 0.8078 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 16 2.5643 -3.8511 -0.0021 15 6 1.4859 -5.3099 -0.0027 16 6 2.3300 -6.5584 -0.0033 17 8 3.5394 -6.4725 -0.0038 18 6 1.6861 -7.8818 -0.0033 19 6 2.4659 -9.0427 -0.0034 20 6 1.8552 -10.2790 -0.0029 21 6 0.4743 -10.3727 -0.0017 22 6 -0.3043 -9.2284 -0.0020 23 6 0.2914 -7.9848 -0.0024 24 1 -0.3633 0.0387 1.0270 25 1 -0.3633 0.8700 -0.5470 26 1 -0.3633 -0.9087 -0.4799 27 1 -0.0403 3.0789 1.4202 28 1 0.7584 -2.5298 -0.8903 29 1 0.7591 -2.5303 0.8896 30 1 0.8564 -5.2959 -0.8924 31 1 0.8572 -5.2972 0.8876 32 1 3.5435 -8.9712 -0.0083 33 1 2.4559 -11.1764 -0.0033 34 1 0.0019 -11.3438 -0.0009 35 1 -1.3812 -9.3097 -0.0015 36 1 -0.3175 -7.0928 -0.0030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069745021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:44 Heat of formation + Delta-G solvation = -27.973594 kcal Electronic energy + Delta-G solvation = -19597.512063 eV Core-core repulsion = 16366.918280 eV Total energy + Delta-G solvation = -3230.593783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.087 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.18097 -38.42349 -38.28295 -34.70995 -32.33907 -31.75713 -31.32678 -29.75449 -29.07986 -26.17528 -24.28041 -24.04145 -22.77179 -20.30809 -19.18306 -17.66592 -16.92669 -16.29530 -16.06766 -16.04405 -15.51281 -15.30822 -14.78536 -14.72717 -14.45201 -14.00917 -13.94429 -13.81162 -13.22504 -12.72987 -12.42139 -12.36210 -12.28747 -12.00498 -11.56914 -11.46534 -11.32761 -11.21036 -10.89028 -10.41477 -10.28825 -9.97764 -9.51391 -9.37871 -9.33230 -9.04850 -8.51742 -7.73775 -7.26299 -6.34601 -3.91100 0.36082 0.99782 1.69095 2.18274 2.85862 3.18345 3.23922 3.28616 3.46528 3.75402 3.80790 4.12307 4.43316 4.55721 4.66117 4.81936 4.91173 4.96540 5.01621 5.07980 5.14454 5.21884 5.46958 5.57280 5.60117 5.61056 5.83080 5.94522 6.03615 6.06509 6.24884 6.49839 6.81159 7.15730 7.32200 7.54392 8.06550 8.43591 9.13940 9.36024 9.90847 10.69298 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.046100 B = 0.002649 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.224666 B =10567.113677 C =11103.169673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.442 5.442 3 C -0.305 4.305 4 H 0.100 0.900 5 C 0.030 3.970 6 N -0.884 5.884 7 Si 0.930 3.070 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.272 1.272 11 C 0.460 3.540 12 O -0.569 6.569 13 C -0.121 4.121 14 S -0.130 6.130 15 C -0.178 4.178 16 C 0.412 3.588 17 O -0.424 6.424 18 C -0.158 4.158 19 C -0.061 4.061 20 C -0.133 4.133 21 C -0.092 4.092 22 C -0.133 4.133 23 C -0.073 4.073 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.025 0.975 27 H 0.268 0.732 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.408 -21.927 -2.093 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.161 5.161 3 C -0.433 4.433 4 H 0.118 0.882 5 C -0.173 4.173 6 N -0.524 5.524 7 Si 0.756 3.244 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.197 1.197 11 C 0.246 3.754 12 O -0.453 6.453 13 C -0.272 4.272 14 S 0.096 5.904 15 C -0.327 4.327 16 C 0.287 3.713 17 O -0.297 6.297 18 C -0.161 4.161 19 C -0.079 4.079 20 C -0.151 4.151 21 C -0.110 4.110 22 C -0.151 4.151 23 C -0.092 4.092 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.207 -21.646 -2.005 22.354 hybrid contribution -1.633 0.836 -0.002 1.835 sum -6.841 -20.810 -2.008 21.998 Atomic orbital electron populations 1.21544 0.81055 0.98817 1.01826 1.43500 1.05535 1.04382 1.62719 1.19645 0.99621 0.83487 1.40524 0.88233 1.25359 0.96521 1.00156 0.95248 1.69987 1.17361 1.29482 1.35534 0.85940 0.79059 0.80583 0.78794 1.19855 1.20926 1.19691 1.19126 0.87811 0.83637 0.84807 1.90574 1.13344 1.86246 1.55114 1.23621 1.01325 0.96984 1.05308 1.88078 1.09686 0.94656 1.97957 1.24055 1.03927 0.97841 1.06860 1.21717 0.88941 0.88442 0.72245 1.90586 1.16038 1.88734 1.34301 1.20438 0.94473 0.94418 1.06748 1.21469 1.00759 0.91354 0.94358 1.21177 0.94961 0.97597 1.01336 1.21447 0.94000 0.98842 0.96678 1.21169 1.00352 0.92268 1.01307 1.21514 0.93440 0.98450 0.95773 0.92233 0.91035 0.95695 0.92151 0.88842 0.88643 0.86995 0.86949 0.84699 0.85321 0.85577 0.85288 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.43 8.52 59.85 0.51 2.94 16 2 N -0.44 -11.41 3.02 -122.19 -0.37 -11.77 16 3 C -0.30 -8.58 9.29 -14.93 -0.14 -8.72 16 4 H 0.10 2.94 7.41 -52.49 -0.39 2.55 16 5 C 0.03 0.80 5.11 -17.47 -0.09 0.71 16 6 N -0.88 -23.42 10.62 55.50 0.59 -22.83 16 7 Si 0.93 20.86 29.57 -169.99 -5.03 15.84 16 8 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 C 0.46 11.48 7.65 -10.99 -0.08 11.40 16 12 O -0.57 -16.45 15.56 5.54 0.09 -16.36 16 13 C -0.12 -2.24 4.95 36.00 0.18 -2.06 16 14 S -0.13 -2.41 20.01 -107.50 -2.15 -4.56 16 15 C -0.18 -2.17 5.04 36.00 0.18 -1.99 16 16 C 0.41 5.39 7.14 -30.68 -0.22 5.17 16 17 O -0.42 -7.13 15.86 5.58 0.09 -7.04 16 18 C -0.16 -1.64 5.87 -105.06 -0.62 -2.26 16 19 C -0.06 -0.59 9.60 -39.11 -0.38 -0.97 16 20 C -0.13 -0.98 10.03 -39.65 -0.40 -1.38 16 21 C -0.09 -0.59 10.04 -39.46 -0.40 -0.99 16 22 C -0.13 -0.89 10.03 -39.65 -0.40 -1.28 16 23 C -0.07 -0.58 9.47 -39.11 -0.37 -0.95 16 24 H 0.06 1.34 7.54 -51.93 -0.39 0.95 16 25 H 0.07 1.64 7.06 -51.93 -0.37 1.27 16 26 H 0.02 0.43 6.36 -51.93 -0.33 0.10 16 27 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.09 1.48 7.40 -51.92 -0.38 1.10 16 29 H 0.10 1.58 8.11 -51.93 -0.42 1.16 16 30 H 0.11 1.08 8.09 -51.92 -0.42 0.66 16 31 H 0.11 1.10 8.09 -51.92 -0.42 0.68 16 32 H 0.14 1.32 7.65 -52.49 -0.40 0.92 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 35 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.13 0.79 7.05 -52.49 -0.37 0.42 16 LS Contribution 325.92 15.07 4.91 4.91 Total: -1.00 -34.32 325.92 -8.38 -42.70 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.30 Total: -0.51 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.22 Total: -0.37 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.22 Total: -34.60 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.17 Total: -23.41 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -2.15 Total: -4.56 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.32 -8.38 -42.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069745021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.731 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds