Wall clock time and date at job start Fri Apr 10 2020 14:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37102 * 120.00164 * 2 1 4 4 H 1.07999 * 120.00285 * 202.40899 * 3 2 1 5 5 C 1.38949 * 119.99650 * 22.41105 * 3 2 1 6 6 N 1.31413 * 119.99970 * 11.59096 * 5 3 2 7 7 Si 1.86795 * 119.99894 * 191.58887 * 5 3 2 8 8 H 1.48501 * 109.47207 * 60.00296 * 7 5 3 9 9 H 1.48506 * 109.47390 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47540 * 300.00118 * 7 5 3 11 11 C 1.34776 * 119.99984 * 180.02562 * 2 1 3 12 12 O 1.21298 * 119.99892 * 180.02562 * 11 2 1 13 13 C 1.50698 * 120.00217 * 359.97438 * 11 2 1 14 14 S 1.81405 * 109.47324 * 179.97438 * 13 11 2 15 15 C 1.81405 * 102.99995 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.46823 * 180.02562 * 15 14 13 17 17 O 1.21253 * 119.99973 * 359.97438 * 16 15 14 18 18 C 1.47172 * 119.99696 * 179.97438 * 16 15 14 19 19 C 1.39850 * 120.17122 * 180.02562 * 18 16 15 20 20 C 1.37885 * 119.82620 * 179.97438 * 19 18 16 21 21 C 1.38407 * 120.17014 * 359.97438 * 20 19 18 22 22 C 1.38409 * 120.34714 * 0.03995 * 21 20 19 23 23 C 1.37887 * 120.17496 * 359.95549 * 22 21 20 24 24 H 1.09005 * 109.46637 * 272.15678 * 1 2 3 25 25 H 1.08997 * 109.47057 * 32.16053 * 1 2 3 26 26 H 1.08997 * 109.46786 * 152.16221 * 1 2 3 27 27 H 0.97003 * 119.99598 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.46705 * 60.00017 * 13 11 2 29 29 H 1.08999 * 109.47239 * 300.00330 * 13 11 2 30 30 H 1.09000 * 109.46712 * 59.99759 * 15 14 13 31 31 H 1.09001 * 109.46715 * 300.00146 * 15 14 13 32 32 H 1.07999 * 120.08546 * 359.69993 * 19 18 16 33 33 H 1.07994 * 119.91296 * 179.97438 * 20 19 18 34 34 H 1.07994 * 119.82514 * 180.02562 * 21 20 19 35 35 H 1.08000 * 119.90898 * 179.97438 * 22 21 20 36 36 H 1.07996 * 120.08506 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1694 1.2227 -0.3565 5 6 1.5345 2.3452 0.4588 6 7 0.3896 2.2706 1.0996 7 14 2.3336 4.0077 0.1647 8 1 2.4815 4.2345 -1.2955 9 1 1.4831 5.0761 0.7483 10 1 3.6719 4.0345 0.8078 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0005 14 16 2.5643 -3.8511 -0.0021 15 6 1.4859 -5.3099 -0.0027 16 6 2.3300 -6.5584 -0.0033 17 8 3.5394 -6.4725 -0.0038 18 6 1.6861 -7.8818 -0.0033 19 6 2.4659 -9.0427 -0.0034 20 6 1.8552 -10.2790 -0.0029 21 6 0.4743 -10.3727 -0.0017 22 6 -0.3043 -9.2284 -0.0020 23 6 0.2914 -7.9848 -0.0024 24 1 -0.3633 0.0387 1.0270 25 1 -0.3633 0.8700 -0.5470 26 1 -0.3633 -0.9087 -0.4799 27 1 -0.0403 3.0789 1.4202 28 1 0.7584 -2.5298 -0.8903 29 1 0.7591 -2.5303 0.8896 30 1 0.8564 -5.2959 -0.8924 31 1 0.8572 -5.2972 0.8876 32 1 3.5435 -8.9712 -0.0083 33 1 2.4559 -11.1764 -0.0033 34 1 0.0019 -11.3438 -0.0009 35 1 -1.3812 -9.3097 -0.0015 36 1 -0.3175 -7.0928 -0.0030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069745021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:44 Heat of formation + Delta-G solvation = -49.228800 kcal Electronic energy + Delta-G solvation = -19598.433758 eV Core-core repulsion = 16366.918280 eV Total energy + Delta-G solvation = -3231.515478 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.087 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.01592 -40.30949 -39.11249 -36.71439 -33.78176 -33.11543 -31.90139 -31.03857 -30.29988 -28.02504 -26.16903 -24.81574 -23.34974 -21.42735 -20.73403 -18.93741 -18.41668 -17.99205 -17.50246 -16.74564 -16.72304 -16.46862 -16.23081 -16.18946 -15.80358 -15.34116 -14.84819 -14.44739 -14.39581 -14.27075 -13.82837 -13.66045 -13.43053 -13.30824 -13.11941 -13.04657 -12.67178 -12.60316 -12.35771 -12.12897 -12.00840 -11.05205 -10.94961 -10.80280 -10.50175 -9.95812 -9.93801 -9.74053 -8.68897 -8.36320 -6.01862 -0.35151 0.40607 0.44046 1.36823 1.37616 1.40296 1.50723 1.58823 1.94311 2.26664 2.85011 2.85819 3.01626 3.05854 3.82325 3.94538 4.03517 4.11549 4.14890 4.15530 4.24160 4.31283 4.35472 4.48890 4.56463 4.64398 4.90742 5.03540 5.08839 5.36427 5.38061 5.42235 5.47135 5.52000 5.96625 6.03715 6.39746 6.43312 7.12081 7.39616 7.95416 8.65151 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.046100 B = 0.002649 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.224666 B =10567.113677 C =11103.169673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.457 5.457 3 C -0.346 4.346 4 H 0.069 0.931 5 C 0.000 4.000 6 N -0.893 5.893 7 Si 0.990 3.010 8 H -0.267 1.267 9 H -0.267 1.267 10 H -0.279 1.279 11 C 0.445 3.555 12 O -0.622 6.622 13 C -0.095 4.095 14 S -0.223 6.223 15 C -0.153 4.153 16 C 0.412 3.588 17 O -0.479 6.479 18 C -0.182 4.182 19 C -0.082 4.082 20 C -0.138 4.138 21 C -0.085 4.085 22 C -0.133 4.133 23 C -0.070 4.070 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.275 0.725 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.118 0.882 33 H 0.147 0.853 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.974 -23.519 -2.230 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.176 5.176 3 C -0.474 4.474 4 H 0.087 0.913 5 C -0.202 4.202 6 N -0.532 5.532 7 Si 0.813 3.187 8 H -0.192 1.192 9 H -0.191 1.191 10 H -0.205 1.205 11 C 0.234 3.766 12 O -0.509 6.509 13 C -0.246 4.246 14 S 0.004 5.996 15 C -0.300 4.300 16 C 0.291 3.709 17 O -0.356 6.356 18 C -0.184 4.184 19 C -0.101 4.101 20 C -0.156 4.156 21 C -0.102 4.102 22 C -0.151 4.151 23 C -0.089 4.089 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.147 0.853 29 H 0.140 0.860 30 H 0.166 0.834 31 H 0.163 0.837 32 H 0.136 0.864 33 H 0.165 0.835 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.838 -23.243 -2.140 24.958 hybrid contribution -0.593 1.165 0.061 1.308 sum -9.431 -22.078 -2.079 24.098 Atomic orbital electron populations 1.21550 0.78732 1.00592 1.01562 1.43778 1.07067 1.04149 1.62609 1.19568 0.99290 0.85660 1.42922 0.91335 1.26070 0.97014 1.02754 0.94363 1.70046 1.17660 1.30626 1.34822 0.85055 0.77930 0.76770 0.78931 1.19181 1.19076 1.20497 1.20162 0.87725 0.85530 0.83224 1.90537 1.15989 1.87444 1.56932 1.23347 1.00292 0.92872 1.08095 1.88480 1.14059 0.98795 1.98310 1.24133 1.02605 0.93212 1.10086 1.22224 0.88390 0.89925 0.70382 1.90577 1.18200 1.89444 1.37405 1.20302 0.95749 0.92791 1.09571 1.21529 1.00285 0.92572 0.95687 1.21428 0.96027 0.97207 1.00908 1.21884 0.93443 1.00433 0.94472 1.21586 1.01963 0.91604 0.99940 1.21804 0.92189 1.00219 0.94639 0.93132 0.92629 0.90752 0.91513 0.85340 0.85995 0.83427 0.83653 0.86432 0.83535 0.82586 0.82263 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.00 8.52 127.77 1.09 6.09 16 2 N -0.46 -23.79 3.02 -658.89 -1.99 -25.78 16 3 C -0.35 -20.08 9.29 84.04 0.78 -19.30 16 4 H 0.07 4.29 7.41 -2.91 -0.02 4.27 16 5 C 0.00 0.01 5.11 84.93 0.43 0.44 16 6 N -0.89 -46.83 10.62 21.66 0.23 -46.60 16 7 Si 0.99 42.90 29.57 68.60 2.03 44.93 16 8 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 9 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 C 0.45 22.51 7.65 87.66 0.67 23.18 16 12 O -0.62 -37.64 15.56 -3.09 -0.05 -37.69 16 13 C -0.10 -3.36 4.95 71.24 0.35 -3.01 16 14 S -0.22 -8.26 20.01 -56.49 -1.13 -9.39 16 15 C -0.15 -3.34 5.04 71.24 0.36 -2.98 16 16 C 0.41 10.65 7.14 28.03 0.20 10.85 16 17 O -0.48 -17.06 15.86 -2.94 -0.05 -17.10 16 18 C -0.18 -3.54 5.87 -20.15 -0.12 -3.66 16 19 C -0.08 -1.58 9.60 22.58 0.22 -1.36 16 20 C -0.14 -1.78 10.03 22.23 0.22 -1.56 16 21 C -0.08 -0.77 10.04 22.35 0.22 -0.55 16 22 C -0.13 -1.19 10.03 22.23 0.22 -0.97 16 23 C -0.07 -0.87 9.47 22.58 0.21 -0.65 16 24 H 0.05 2.21 7.54 -2.38 -0.02 2.19 16 25 H 0.05 2.49 7.06 -2.39 -0.02 2.48 16 26 H 0.07 2.35 6.36 -2.39 -0.02 2.33 16 27 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 28 H 0.13 3.59 7.40 -2.39 -0.02 3.57 16 29 H 0.12 3.64 8.11 -2.39 -0.02 3.62 16 30 H 0.15 2.22 8.09 -2.39 -0.02 2.20 16 31 H 0.15 2.27 8.09 -2.39 -0.02 2.25 16 32 H 0.12 2.54 7.65 -2.91 -0.02 2.52 16 33 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.16 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 36 H 0.16 1.07 7.05 -2.91 -0.02 1.05 16 Total: -1.00 -81.00 325.92 5.00 -76.00 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.09 Total: 9.11 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 4.87 Total: 6.53 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -1.76 Total: -72.38 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -0.09 Total: -54.79 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.13 Total: -9.39 kcal Total: -81.00 5.00 -76.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069745021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.773 kcal (2) G-P(sol) polarization free energy of solvation -81.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds