Wall clock time and date at job start Fri Apr 10 2020 14:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00127 * 2 1 4 4 H 1.48495 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46796 * 300.00024 * 3 2 1 6 6 H 1.48502 * 109.47155 * 59.99324 * 3 2 1 7 7 C 1.37881 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99630 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46629 * 179.97438 * 9 7 2 11 11 C 1.34786 * 119.99813 * 180.02562 * 10 9 7 12 12 O 1.21578 * 119.99845 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99936 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00221 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47522 * 179.97438 * 14 13 11 16 16 N 1.30834 * 125.96516 * 275.02670 * 15 14 13 17 17 C 1.33233 * 109.82996 * 179.73851 * 16 15 14 18 18 C 1.50702 * 125.52643 * 179.97438 * 17 16 15 19 19 F 1.39899 * 109.47466 * 104.99690 * 18 17 16 20 20 F 1.39900 * 109.47209 * 224.99516 * 18 17 16 21 21 F 1.39900 * 109.47069 * 344.99681 * 18 17 16 22 22 N 1.30708 * 108.95078 * 359.97438 * 17 16 15 23 23 N 1.34429 * 125.95883 * 94.71694 * 15 14 13 24 24 H 0.97003 * 126.82753 * 0.26347 * 23 15 14 25 25 H 0.96995 * 120.00046 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47058 * 60.00367 * 9 7 2 27 27 H 1.08992 * 109.47259 * 299.99707 * 9 7 2 28 28 H 0.96996 * 120.00418 * 359.97438 * 10 9 7 29 29 H 0.97004 * 119.99916 * 359.97438 * 13 11 10 30 30 H 1.09008 * 109.46835 * 59.99620 * 14 13 11 31 31 H 1.09003 * 109.46910 * 300.00275 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5584 -5.1056 0.0000 13 7 2.6296 -5.9078 0.0005 14 6 2.1413 -7.2890 0.0005 15 6 3.3134 -8.2362 0.0005 16 7 3.9693 -8.6470 -1.0543 17 6 4.9479 -9.4722 -0.6850 18 6 5.9196 -10.1505 -1.6161 19 9 7.1656 -9.5203 -1.5298 20 9 6.0512 -11.4954 -1.2539 21 9 5.4440 -10.0655 -2.9290 22 7 4.9286 -9.5982 0.6158 23 7 3.8711 -8.8019 1.0850 24 1 3.5977 -8.6835 2.0081 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 3.1567 -3.4355 0.0002 29 1 3.5833 -5.7305 0.0009 30 1 1.5360 -7.4604 -0.8897 31 1 1.5353 -7.4601 0.8903 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426448782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:24 Heat of formation + Delta-G solvation = -91.164965 kcal Electronic energy + Delta-G solvation = -22285.431012 eV Core-core repulsion = 17996.239841 eV Total energy + Delta-G solvation = -4289.191170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.58499 -48.12942 -48.06155 -43.04222 -39.38244 -35.33738 -34.17564 -33.59123 -32.55432 -32.01918 -28.30272 -27.41125 -26.35866 -22.84765 -22.42134 -21.65509 -20.43867 -19.29339 -19.02047 -18.71849 -18.23773 -17.78309 -16.61365 -16.19981 -15.64912 -15.25919 -14.91116 -14.90185 -14.68278 -14.48650 -14.42224 -14.19939 -14.19149 -13.71146 -13.52548 -13.19293 -12.94286 -12.69118 -12.02961 -11.83906 -11.13721 -10.97633 -10.94805 -10.93951 -10.63517 -10.35500 -9.61814 -9.40804 -9.11174 -8.77283 -7.89837 -6.20040 -4.26800 0.57253 1.42873 1.72688 2.07683 2.92317 3.19917 3.21624 3.29649 3.30640 3.33085 3.72574 3.77671 3.86780 4.24099 4.29274 4.86209 4.98275 5.16501 5.19409 5.27591 5.36224 6.20693 6.41373 6.91423 7.09498 7.37440 7.45451 7.49600 7.77266 7.95554 8.66586 8.80317 9.16124 9.40599 10.90156 Molecular weight = 293.08amu Principal moments of inertia in cm(-1) A = 0.027938 B = 0.002654 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.972705 B =10546.718765 C =11056.201450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.724 5.724 11 C 0.698 3.302 12 O -0.595 6.595 13 N -0.755 5.755 14 C 0.221 3.779 15 C 0.292 3.708 16 N -0.485 5.485 17 C 0.141 3.859 18 C 0.577 3.423 19 F -0.160 7.160 20 F -0.160 7.160 21 F -0.150 7.150 22 N -0.247 5.247 23 N -0.450 5.450 24 H 0.454 0.546 25 H 0.266 0.734 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.388 0.612 29 H 0.396 0.604 30 H 0.111 0.889 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.208 -20.317 0.955 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.375 5.375 11 C 0.398 3.602 12 O -0.473 6.473 13 N -0.416 5.416 14 C 0.093 3.907 15 C 0.013 3.987 16 N -0.213 5.213 17 C -0.144 4.144 18 C 0.519 3.481 19 F -0.142 7.142 20 F -0.142 7.142 21 F -0.131 7.131 22 N -0.079 5.079 23 N -0.170 5.170 24 H 0.302 0.698 25 H 0.075 0.925 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.220 0.780 29 H 0.229 0.771 30 H 0.128 0.872 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.355 -20.721 0.940 23.183 hybrid contribution 1.185 1.115 0.547 1.717 sum 11.540 -19.606 1.487 22.798 Atomic orbital electron populations 1.69981 1.06087 1.27255 1.48892 1.24942 0.94921 0.99437 0.94694 0.86353 0.79807 0.82921 0.77769 1.19655 1.20759 1.20815 1.21250 0.93327 0.90362 1.53209 0.91860 1.19045 0.87706 0.80917 0.97806 1.45741 1.11059 1.04144 1.76605 1.16001 0.84877 0.80905 0.78448 1.90905 1.13909 1.84023 1.58504 1.45011 1.09482 1.03681 1.83387 1.19477 0.87733 0.77542 1.05900 1.24594 0.96447 0.95778 0.81915 1.70377 1.07293 1.14063 1.29594 1.23790 0.98722 1.00853 0.91070 1.16254 0.77793 0.76024 0.78015 1.93282 1.42742 1.82073 1.96055 1.93271 1.95836 1.33457 1.91606 1.93294 1.88022 1.95873 1.35898 1.78048 1.05625 1.13854 1.10333 1.48175 1.23087 1.34335 1.11428 0.69763 0.92454 0.95494 0.95552 0.77969 0.77058 0.87156 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.53 13.29 55.43 0.74 -24.79 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.54 -14.33 9.28 -34.44 -0.32 -14.65 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.27 6.80 5.43 -5.19 -0.03 6.77 16 10 N -0.72 -14.39 5.55 -66.42 -0.37 -14.76 16 11 C 0.70 12.87 8.57 -86.92 -0.74 12.13 16 12 O -0.59 -13.39 16.34 5.30 0.09 -13.30 16 13 N -0.76 -9.51 5.55 -66.42 -0.37 -9.87 16 14 C 0.22 2.21 6.30 -5.20 -0.03 2.18 16 15 C 0.29 2.74 7.61 -155.69 -1.18 1.56 16 16 N -0.48 -5.64 11.00 -8.16 -0.09 -5.73 16 17 C 0.14 1.57 7.40 -156.86 -1.16 0.41 16 18 C 0.58 5.90 3.57 36.01 0.13 6.03 16 19 F -0.16 -1.64 17.30 2.25 0.04 -1.60 16 20 F -0.16 -1.57 17.30 2.25 0.04 -1.53 16 21 F -0.15 -1.60 17.16 2.25 0.04 -1.57 16 22 N -0.25 -2.53 12.80 32.42 0.41 -2.12 16 23 N -0.45 -3.46 7.45 32.62 0.24 -3.22 16 24 H 0.45 1.90 8.96 -182.33 -1.63 0.27 16 25 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.39 6.60 8.33 -40.82 -0.34 6.26 16 29 H 0.40 4.21 8.48 -40.82 -0.35 3.87 16 30 H 0.11 1.20 8.14 -51.92 -0.42 0.77 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 302.45 15.07 4.56 4.56 Total: -1.00 -33.00 302.45 -6.68 -39.68 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.55 Total: 2.75 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: -3.44 Total: 16.06 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.57 Total: -60.49 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.12 Total: -4.69 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.00 -6.68 -39.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426448782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.484 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds