Wall clock time and date at job start Fri Apr 10 2020 14:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00127 * 2 1 4 4 H 1.48495 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46796 * 300.00024 * 3 2 1 6 6 H 1.48502 * 109.47155 * 59.99324 * 3 2 1 7 7 C 1.37881 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99630 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46629 * 179.97438 * 9 7 2 11 11 C 1.34786 * 119.99813 * 180.02562 * 10 9 7 12 12 O 1.21578 * 119.99845 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99936 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00221 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47522 * 179.97438 * 14 13 11 16 16 N 1.30834 * 125.96516 * 275.02670 * 15 14 13 17 17 C 1.33233 * 109.82996 * 179.73851 * 16 15 14 18 18 C 1.50702 * 125.52643 * 179.97438 * 17 16 15 19 19 F 1.39899 * 109.47466 * 104.99690 * 18 17 16 20 20 F 1.39900 * 109.47209 * 224.99516 * 18 17 16 21 21 F 1.39900 * 109.47069 * 344.99681 * 18 17 16 22 22 N 1.30708 * 108.95078 * 359.97438 * 17 16 15 23 23 N 1.34429 * 125.95883 * 94.71694 * 15 14 13 24 24 H 0.97003 * 126.82753 * 0.26347 * 23 15 14 25 25 H 0.96995 * 120.00046 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47058 * 60.00367 * 9 7 2 27 27 H 1.08992 * 109.47259 * 299.99707 * 9 7 2 28 28 H 0.96996 * 120.00418 * 359.97438 * 10 9 7 29 29 H 0.97004 * 119.99916 * 359.97438 * 13 11 10 30 30 H 1.09008 * 109.46835 * 59.99620 * 14 13 11 31 31 H 1.09003 * 109.46910 * 300.00275 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5584 -5.1056 0.0000 13 7 2.6296 -5.9078 0.0005 14 6 2.1413 -7.2890 0.0005 15 6 3.3134 -8.2362 0.0005 16 7 3.9693 -8.6470 -1.0543 17 6 4.9479 -9.4722 -0.6850 18 6 5.9196 -10.1505 -1.6161 19 9 7.1656 -9.5203 -1.5298 20 9 6.0512 -11.4954 -1.2539 21 9 5.4440 -10.0655 -2.9290 22 7 4.9286 -9.5982 0.6158 23 7 3.8711 -8.8019 1.0850 24 1 3.5977 -8.6835 2.0081 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 3.1567 -3.4355 0.0002 29 1 3.5833 -5.7305 0.0009 30 1 1.5360 -7.4604 -0.8897 31 1 1.5353 -7.4601 0.8903 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426448782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:24 Heat of formation + Delta-G solvation = -117.111121 kcal Electronic energy + Delta-G solvation = -22286.556122 eV Core-core repulsion = 17996.239841 eV Total energy + Delta-G solvation = -4290.316280 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.084 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -51.38152 -48.91554 -48.87111 -43.83505 -40.87453 -36.61414 -35.90148 -34.45871 -34.28500 -33.11290 -29.74637 -28.43793 -27.66615 -24.61344 -23.36205 -22.50360 -21.93969 -20.19656 -19.87418 -19.79912 -19.34591 -18.62065 -18.02568 -17.64971 -16.91199 -16.62079 -16.35854 -15.84102 -15.69469 -15.57985 -15.28309 -15.00330 -14.99323 -14.94822 -14.89323 -14.55461 -14.01240 -13.92726 -13.74851 -13.39963 -12.85062 -12.73581 -12.20192 -11.88624 -11.75654 -11.56816 -11.41744 -11.17082 -10.79249 -10.38827 -9.63475 -8.26267 -6.41526 -0.21868 0.68875 0.86622 1.31445 1.46039 1.46500 1.59604 1.95500 2.15918 2.22332 2.41571 2.53168 2.96514 3.07548 3.09395 3.44816 3.51324 4.14407 4.35843 4.48256 4.51701 5.10159 5.26936 5.32693 5.51036 5.62920 5.67307 5.87979 6.15074 6.32457 6.70376 7.22386 7.28646 7.67820 8.85968 Molecular weight = 293.08amu Principal moments of inertia in cm(-1) A = 0.027938 B = 0.002654 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.972705 B =10546.718765 C =11056.201450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.255 1.255 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.285 3.715 10 N -0.721 5.721 11 C 0.702 3.298 12 O -0.637 6.637 13 N -0.732 5.732 14 C 0.223 3.777 15 C 0.299 3.701 16 N -0.509 5.509 17 C 0.130 3.870 18 C 0.580 3.420 19 F -0.161 7.161 20 F -0.158 7.158 21 F -0.154 7.154 22 N -0.251 5.251 23 N -0.427 5.427 24 H 0.470 0.530 25 H 0.268 0.732 26 H -0.011 1.011 27 H -0.008 1.008 28 H 0.404 0.596 29 H 0.410 0.590 30 H 0.105 0.895 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.040 -20.437 1.544 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.805 3.195 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.161 3.839 10 N -0.375 5.375 11 C 0.401 3.599 12 O -0.519 6.519 13 N -0.391 5.391 14 C 0.096 3.904 15 C 0.020 3.980 16 N -0.238 5.238 17 C -0.155 4.155 18 C 0.523 3.477 19 F -0.142 7.142 20 F -0.139 7.139 21 F -0.135 7.135 22 N -0.084 5.084 23 N -0.150 5.150 24 H 0.323 0.677 25 H 0.077 0.923 26 H 0.007 0.993 27 H 0.010 0.990 28 H 0.240 0.760 29 H 0.246 0.754 30 H 0.123 0.877 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.260 -20.899 1.552 24.280 hybrid contribution 0.607 1.032 0.386 1.258 sum 12.867 -19.867 1.939 23.749 Atomic orbital electron populations 1.70130 1.08120 1.28438 1.50105 1.25992 0.95742 1.03657 0.94040 0.85154 0.79070 0.77648 0.77593 1.17825 1.20644 1.20524 1.21637 0.94290 0.90606 1.52596 0.89981 1.18444 0.88019 0.83032 0.94374 1.45303 1.11021 1.03796 1.77332 1.16023 0.84777 0.81238 0.77856 1.90882 1.16119 1.84679 1.60171 1.44668 1.09401 1.03568 1.81478 1.19584 0.88023 0.75824 1.06932 1.24228 0.96053 0.95701 0.82024 1.70327 1.07877 1.14705 1.30848 1.23865 0.98993 1.01256 0.91400 1.16179 0.77682 0.76072 0.77765 1.93279 1.42756 1.82108 1.96041 1.93274 1.95820 1.33265 1.91560 1.93283 1.88090 1.95907 1.36242 1.78018 1.06171 1.14117 1.10049 1.48090 1.21884 1.33017 1.12010 0.67740 0.92276 0.99336 0.99013 0.76036 0.75420 0.87673 0.86212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.65 13.29 21.45 0.28 -54.36 16 2 C 0.01 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.98 41.40 29.54 68.60 2.03 43.42 16 4 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -29.08 9.28 25.60 0.24 -28.84 16 8 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 9 C 0.28 14.93 5.43 85.63 0.46 15.39 16 10 N -0.72 -28.45 5.55 -482.30 -2.68 -31.12 16 11 C 0.70 25.47 8.57 179.05 1.53 27.00 16 12 O -0.64 -28.92 16.34 -3.96 -0.06 -28.98 16 13 N -0.73 -17.05 5.55 -482.31 -2.68 -19.73 16 14 C 0.22 4.00 6.30 85.63 0.54 4.54 16 15 C 0.30 4.96 7.61 138.22 1.05 6.01 16 16 N -0.51 -10.99 11.00 -179.74 -1.98 -12.97 16 17 C 0.13 2.68 7.40 138.64 1.03 3.71 16 18 C 0.58 11.24 3.57 71.24 0.25 11.49 16 19 F -0.16 -3.10 17.30 44.97 0.78 -2.32 16 20 F -0.16 -2.91 17.30 44.97 0.78 -2.13 16 21 F -0.15 -3.18 17.16 44.97 0.77 -2.41 16 22 N -0.25 -4.63 12.80 -51.34 -0.66 -5.29 16 23 N -0.43 -5.46 7.45 -50.71 -0.38 -5.84 16 24 H 0.47 2.51 8.96 -213.09 -1.91 0.60 16 25 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 26 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 27 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 28 H 0.40 13.14 8.33 -92.71 -0.77 12.36 16 29 H 0.41 7.66 8.48 -92.71 -0.79 6.88 16 30 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -72.10 302.45 -0.44 -72.54 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -2.22 Total: 9.13 kcal Atomic # 6 Polarization: 34.49 SS G_CDS: 5.57 Total: 40.06 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -8.08 Total: -129.31 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.06 Total: -28.98 kcal Atomic # 9 Polarization: -9.19 SS G_CDS: 2.33 Total: -6.86 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -72.10 -0.44 -72.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426448782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.572 kcal (2) G-P(sol) polarization free energy of solvation -72.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds