Wall clock time and date at job start Fri Apr 10 2020 14:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47202 * 2 1 4 4 C 1.50700 * 109.47248 * 120.00527 * 2 1 3 5 5 O 1.21295 * 120.00185 * 106.41737 * 4 2 1 6 6 N 1.34779 * 119.99722 * 286.41829 * 4 2 1 7 7 C 1.37094 * 120.00279 * 3.84517 * 6 4 2 8 8 H 1.08001 * 120.00109 * 24.07995 * 7 6 4 9 9 C 1.38949 * 120.00098 * 204.08237 * 7 6 4 10 10 N 1.31401 * 120.00248 * 11.13597 * 9 7 6 11 11 Si 1.86805 * 119.99750 * 191.13999 * 9 7 6 12 12 H 1.48497 * 109.47374 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.46996 * 119.99913 * 11 9 7 14 14 H 1.48496 * 109.46999 * 239.99532 * 11 9 7 15 15 C 1.46502 * 119.99855 * 183.84913 * 6 4 2 16 16 C 1.50701 * 109.47193 * 82.65692 * 15 6 4 17 17 O 1.20824 * 120.00061 * 0.02562 * 16 15 6 18 18 O 1.34224 * 120.00030 * 179.97438 * 16 15 6 19 19 N 1.46504 * 109.47250 * 240.00424 * 2 1 3 20 20 C 1.34702 * 126.73017 * 324.99741 * 19 2 1 21 21 N 1.30524 * 108.34627 * 179.97438 * 20 19 2 22 22 C 1.34186 * 109.79571 * 359.97438 * 21 20 19 23 23 C 1.43200 * 125.67420 * 180.02562 * 22 21 20 24 24 N 6.04814 * 125.62511 * 254.35682 * 2 1 3 25 25 N 1.31725 * 108.64949 * 359.75904 * 22 21 20 26 26 H 1.08998 * 109.46923 * 294.02258 * 1 2 3 27 27 H 1.08993 * 109.47189 * 54.02786 * 1 2 3 28 28 H 1.09004 * 109.46849 * 174.02856 * 1 2 3 29 29 H 0.97005 * 120.00277 * 180.02562 * 10 9 7 30 30 H 1.09001 * 109.47045 * 202.66276 * 15 6 4 31 31 H 1.09007 * 109.46826 * 322.66118 * 15 6 4 32 32 H 0.96704 * 117.00546 * 180.02562 * 18 16 15 33 33 H 1.08002 * 125.82490 * 359.97438 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.5145 -1.8195 1.1360 6 7 1.9460 -0.1136 2.4357 7 6 1.3302 1.1055 2.5544 8 1 0.5959 1.4129 1.8245 9 6 1.6509 1.9456 3.6136 10 7 2.6891 1.6782 4.3733 11 14 0.6059 3.4553 3.9577 12 1 -0.4959 3.5315 2.9650 13 1 0.0350 3.3609 5.3253 14 1 1.4482 4.6740 3.8561 15 6 2.5101 -0.7676 3.6191 16 6 3.9890 -0.4868 3.6911 17 8 4.5174 0.1904 2.8414 18 8 4.7190 -0.9883 4.6997 19 7 2.0184 -0.6905 -1.1962 20 6 1.4532 -1.7539 -1.7997 21 7 2.1837 -2.0767 -2.8321 22 6 3.2302 -1.2422 -2.9271 23 6 4.2466 -1.2886 -3.9348 24 7 5.0529 -1.3256 -4.7341 25 7 3.1638 -0.3696 -1.9426 26 1 -0.3633 0.4184 0.9386 27 1 -0.3633 0.6036 -0.8316 28 1 -0.3633 -1.0221 -0.1069 29 1 2.9128 2.2645 5.1130 30 1 2.0229 -0.3815 4.5145 31 1 2.3474 -1.8433 3.5519 32 1 5.6635 -0.7808 4.7036 33 1 0.5498 -2.2541 -1.4833 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589341472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:28 Heat of formation + Delta-G solvation = 23.294027 kcal Electronic energy + Delta-G solvation = -23577.113096 eV Core-core repulsion = 19834.741980 eV Total energy + Delta-G solvation = -3742.371116 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.096 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.11960 -39.63357 -38.45725 -36.61262 -35.49112 -34.73567 -34.55397 -31.90751 -31.50526 -30.37174 -27.90144 -25.58078 -24.76943 -23.66243 -22.06381 -20.80647 -19.56478 -18.51870 -17.74359 -17.06299 -16.82272 -15.88973 -15.72498 -15.50909 -15.02888 -14.61420 -14.54016 -14.34454 -13.94729 -13.45562 -13.37556 -13.00543 -12.88501 -12.58210 -12.41716 -12.23156 -11.96284 -11.69436 -11.62807 -11.21986 -11.17660 -10.69788 -10.56598 -10.36809 -10.13063 -10.05050 -9.79618 -9.69255 -9.27576 -8.80084 -8.22124 -6.76476 -4.38749 1.26173 2.04541 2.29892 2.56025 2.88781 3.01310 3.05432 3.26197 3.46770 3.56147 3.60286 3.76912 4.05462 4.37670 4.60605 4.70927 4.85631 5.18036 5.29403 5.44113 5.69722 5.80864 5.99446 6.03889 6.11127 6.26570 6.40826 6.48544 6.79304 7.04780 7.27228 7.31467 7.52333 7.89209 7.94243 8.66350 8.93173 9.08566 9.37875 10.30027 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.017189 B = 0.005313 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.559499 B = 5268.837639 C = 6022.279622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 H 0.134 0.866 4 C 0.460 3.540 5 O -0.588 6.588 6 N -0.416 5.416 7 C -0.355 4.355 8 H 0.112 0.888 9 C 0.045 3.955 10 N -0.865 5.865 11 Si 0.932 3.068 12 H -0.265 1.265 13 H -0.277 1.277 14 H -0.279 1.279 15 C 0.159 3.841 16 C 0.498 3.502 17 O -0.508 6.508 18 O -0.535 6.535 19 N -0.331 5.331 20 C 0.284 3.716 21 N -0.518 5.518 22 C 0.279 3.721 23 C 0.323 3.677 24 N -0.380 5.380 25 N -0.247 5.247 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.277 0.723 30 H 0.127 0.873 31 H 0.083 0.917 32 H 0.392 0.608 33 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.289 -1.578 -1.141 7.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.152 0.848 4 C 0.246 3.754 5 O -0.473 6.473 6 N -0.134 5.134 7 C -0.482 4.482 8 H 0.129 0.871 9 C -0.162 4.162 10 N -0.502 5.502 11 Si 0.757 3.243 12 H -0.189 1.189 13 H -0.202 1.202 14 H -0.205 1.205 15 C 0.034 3.966 16 C 0.339 3.661 17 O -0.393 6.393 18 O -0.346 6.346 19 N -0.121 5.121 20 C -0.013 4.013 21 N -0.247 5.247 22 C -0.003 4.003 23 C 0.003 3.997 24 N -0.059 5.059 25 N -0.080 5.080 26 H 0.129 0.871 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.101 0.899 32 H 0.248 0.752 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -5.621 -1.640 -2.456 6.350 hybrid contribution -0.121 1.135 1.048 1.549 sum -5.742 -0.505 -1.409 5.933 Atomic orbital electron populations 1.22293 0.90588 1.03603 1.05774 1.21293 0.95937 0.98281 0.80087 0.84808 1.19925 0.83627 0.87569 0.84258 1.90626 1.50217 1.20909 1.85515 1.43187 1.48251 1.18418 1.03555 1.19879 1.21120 0.93335 1.13856 0.87110 1.25383 0.95308 0.98984 0.96494 1.69697 1.23398 1.38849 1.18225 0.85786 0.79342 0.80341 0.78793 1.18908 1.20238 1.20470 1.20406 0.87222 0.96987 0.91973 1.23544 0.90264 0.75093 0.77208 1.90585 1.72600 1.35724 1.40437 1.84499 1.25736 1.72988 1.51367 1.50344 1.16977 1.23564 1.21246 1.25867 0.99096 0.87782 0.88541 1.70534 1.05459 1.27329 1.21395 1.18086 0.93735 0.94842 0.93646 1.22938 0.91430 0.93811 0.91511 1.81248 1.08653 1.06994 1.09054 1.78505 1.02699 1.21713 1.05096 0.87125 0.90931 0.91339 0.91234 0.85547 0.89947 0.75153 0.75761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 8.63 37.16 0.32 -1.62 16 2 C 0.15 2.51 2.95 -69.08 -0.20 2.30 16 3 H 0.13 2.37 7.68 -51.93 -0.40 1.97 16 4 C 0.46 9.65 6.69 -10.98 -0.07 9.58 16 5 O -0.59 -13.91 16.02 5.54 0.09 -13.82 16 6 N -0.42 -9.00 2.19 -116.09 -0.25 -9.25 16 7 C -0.36 -7.44 8.39 -14.94 -0.13 -7.57 16 8 H 0.11 2.02 4.79 -52.49 -0.25 1.77 16 9 C 0.05 0.98 5.07 -17.47 -0.09 0.89 16 10 N -0.87 -20.20 8.95 55.50 0.50 -19.70 16 11 Si 0.93 16.87 29.57 -169.99 -5.03 11.84 16 12 H -0.27 -4.50 7.11 56.52 0.40 -4.10 16 13 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 14 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 15 C 0.16 3.41 5.14 -5.19 -0.03 3.39 16 16 C 0.50 11.39 6.43 36.01 0.23 11.63 16 17 O -0.51 -13.47 16.62 -18.75 -0.31 -13.78 16 18 O -0.53 -10.15 13.42 -39.24 -0.53 -10.68 16 19 N -0.33 -5.62 3.13 -57.24 -0.18 -5.80 16 20 C 0.28 4.11 11.56 -90.66 -1.05 3.06 16 21 N -0.52 -8.42 11.22 -13.78 -0.15 -8.57 16 22 C 0.28 4.84 7.82 -158.51 -1.24 3.60 16 23 C 0.32 5.38 16.01 -22.47 -0.36 5.02 16 24 N -0.38 -6.44 18.54 41.84 0.78 -5.66 16 25 N -0.25 -4.65 12.75 30.96 0.39 -4.26 16 26 H 0.11 1.36 5.61 -51.93 -0.29 1.07 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.68 6.91 -51.93 -0.36 0.32 16 29 H 0.28 6.23 8.31 -40.82 -0.34 5.89 16 30 H 0.13 2.67 6.51 -51.93 -0.34 2.33 16 31 H 0.08 1.65 7.60 -51.93 -0.39 1.26 16 32 H 0.39 5.82 9.10 45.56 0.41 6.24 16 33 H 0.23 2.20 7.16 -52.49 -0.38 1.82 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -31.27 304.21 -4.28 -35.55 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -1.55 Total: 9.26 kcal Atomic # 6 Polarization: 32.90 SS G_CDS: -2.61 Total: 30.28 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 1.08 Total: -53.24 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.75 Total: -38.28 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.84 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.27 -4.28 -35.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589341472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.842 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds