Wall clock time and date at job start Fri Apr 10 2020 14:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47202 * 2 1 4 4 C 1.50700 * 109.47248 * 120.00527 * 2 1 3 5 5 O 1.21295 * 120.00185 * 106.41737 * 4 2 1 6 6 N 1.34779 * 119.99722 * 286.41829 * 4 2 1 7 7 C 1.37094 * 120.00279 * 3.84517 * 6 4 2 8 8 H 1.08001 * 120.00109 * 24.07995 * 7 6 4 9 9 C 1.38949 * 120.00098 * 204.08237 * 7 6 4 10 10 N 1.31401 * 120.00248 * 11.13597 * 9 7 6 11 11 Si 1.86805 * 119.99750 * 191.13999 * 9 7 6 12 12 H 1.48497 * 109.47374 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.46996 * 119.99913 * 11 9 7 14 14 H 1.48496 * 109.46999 * 239.99532 * 11 9 7 15 15 C 1.46502 * 119.99855 * 183.84913 * 6 4 2 16 16 C 1.50701 * 109.47193 * 82.65692 * 15 6 4 17 17 O 1.20824 * 120.00061 * 0.02562 * 16 15 6 18 18 O 1.34224 * 120.00030 * 179.97438 * 16 15 6 19 19 N 1.46504 * 109.47250 * 240.00424 * 2 1 3 20 20 C 1.34702 * 126.73017 * 324.99741 * 19 2 1 21 21 N 1.30524 * 108.34627 * 179.97438 * 20 19 2 22 22 C 1.34186 * 109.79571 * 359.97438 * 21 20 19 23 23 C 1.43200 * 125.67420 * 180.02562 * 22 21 20 24 24 N 6.04814 * 125.62511 * 254.35682 * 2 1 3 25 25 N 1.31725 * 108.64949 * 359.75904 * 22 21 20 26 26 H 1.08998 * 109.46923 * 294.02258 * 1 2 3 27 27 H 1.08993 * 109.47189 * 54.02786 * 1 2 3 28 28 H 1.09004 * 109.46849 * 174.02856 * 1 2 3 29 29 H 0.97005 * 120.00277 * 180.02562 * 10 9 7 30 30 H 1.09001 * 109.47045 * 202.66276 * 15 6 4 31 31 H 1.09007 * 109.46826 * 322.66118 * 15 6 4 32 32 H 0.96704 * 117.00546 * 180.02562 * 18 16 15 33 33 H 1.08002 * 125.82490 * 359.97438 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.5145 -1.8195 1.1360 6 7 1.9460 -0.1136 2.4357 7 6 1.3302 1.1055 2.5544 8 1 0.5959 1.4129 1.8245 9 6 1.6509 1.9456 3.6136 10 7 2.6891 1.6782 4.3733 11 14 0.6059 3.4553 3.9577 12 1 -0.4959 3.5315 2.9650 13 1 0.0350 3.3609 5.3253 14 1 1.4482 4.6740 3.8561 15 6 2.5101 -0.7676 3.6191 16 6 3.9890 -0.4868 3.6911 17 8 4.5174 0.1904 2.8414 18 8 4.7190 -0.9883 4.6997 19 7 2.0184 -0.6905 -1.1962 20 6 1.4532 -1.7539 -1.7997 21 7 2.1837 -2.0767 -2.8321 22 6 3.2302 -1.2422 -2.9271 23 6 4.2466 -1.2886 -3.9348 24 7 5.0529 -1.3256 -4.7341 25 7 3.1638 -0.3696 -1.9426 26 1 -0.3633 0.4184 0.9386 27 1 -0.3633 0.6036 -0.8316 28 1 -0.3633 -1.0221 -0.1069 29 1 2.9128 2.2645 5.1130 30 1 2.0229 -0.3815 4.5145 31 1 2.3474 -1.8433 3.5519 32 1 5.6635 -0.7808 4.7036 33 1 0.5498 -2.2541 -1.4833 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589341472.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:27 Heat of formation + Delta-G solvation = 2.276695 kcal Electronic energy + Delta-G solvation = -23578.024476 eV Core-core repulsion = 19834.741980 eV Total energy + Delta-G solvation = -3743.282496 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.096 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.39048 -41.30368 -40.12596 -37.95787 -37.11753 -36.47666 -35.91605 -33.54532 -32.78449 -31.66237 -29.47766 -27.05277 -26.11071 -25.00234 -23.46979 -22.32538 -21.13151 -19.89794 -19.20901 -18.79159 -18.27748 -17.43988 -17.29846 -16.89870 -16.30956 -16.21289 -16.07825 -15.90000 -15.41764 -14.89085 -14.73176 -14.36658 -14.20696 -13.94319 -13.66577 -13.56056 -13.46498 -13.22049 -13.08256 -12.69463 -12.41370 -12.17722 -12.12887 -11.92973 -11.59198 -11.41098 -11.35009 -11.02947 -11.00764 -10.34609 -9.90608 -8.38922 -6.04966 -0.05907 0.76548 1.08679 1.24886 1.42790 1.55684 1.66580 1.71938 1.80969 2.16748 2.27067 2.30101 2.52087 2.83443 3.14340 3.44634 3.72094 3.92650 4.03941 4.25414 4.44303 4.54116 4.73299 4.78827 4.83256 4.85385 4.96968 5.17798 5.49241 5.65003 5.67246 5.91125 5.98698 6.27043 6.67965 7.02832 7.30358 7.41178 7.75701 8.67977 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.017189 B = 0.005313 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.559499 B = 5268.837639 C = 6022.279622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.121 0.879 4 C 0.451 3.549 5 O -0.620 6.620 6 N -0.426 5.426 7 C -0.359 4.359 8 H 0.139 0.861 9 C -0.001 4.001 10 N -0.900 5.900 11 Si 0.994 3.006 12 H -0.239 1.239 13 H -0.279 1.279 14 H -0.298 1.298 15 C 0.156 3.844 16 C 0.499 3.501 17 O -0.553 6.553 18 O -0.524 6.524 19 N -0.340 5.340 20 C 0.298 3.702 21 N -0.529 5.529 22 C 0.279 3.721 23 C 0.329 3.671 24 N -0.387 5.387 25 N -0.287 5.287 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.272 0.728 30 H 0.127 0.873 31 H 0.092 0.908 32 H 0.411 0.589 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.614 -1.610 -1.632 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.138 0.862 4 C 0.239 3.761 5 O -0.508 6.508 6 N -0.144 5.144 7 C -0.485 4.485 8 H 0.156 0.844 9 C -0.204 4.204 10 N -0.538 5.538 11 Si 0.818 3.182 12 H -0.162 1.162 13 H -0.205 1.205 14 H -0.225 1.225 15 C 0.031 3.969 16 C 0.342 3.658 17 O -0.442 6.442 18 O -0.336 6.336 19 N -0.131 5.131 20 C 0.003 3.997 21 N -0.258 5.258 22 C -0.003 4.003 23 C 0.010 3.990 24 N -0.066 5.066 25 N -0.120 5.120 26 H 0.127 0.873 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.144 0.856 31 H 0.110 0.890 32 H 0.270 0.730 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -7.961 -1.687 -2.940 8.653 hybrid contribution 0.679 1.057 1.232 1.759 sum -7.283 -0.630 -1.709 7.507 Atomic orbital electron populations 1.22344 0.86293 1.05907 1.06842 1.21315 0.98950 0.96586 0.78136 0.86170 1.20667 0.82913 0.87294 0.85219 1.90592 1.51530 1.22435 1.86197 1.43425 1.48276 1.18738 1.03932 1.20484 1.21063 0.92909 1.14025 0.84383 1.26235 0.96109 1.01544 0.96480 1.69809 1.25187 1.39910 1.18923 0.84827 0.78186 0.76180 0.78974 1.16195 1.20478 1.22494 1.20474 0.86482 0.97563 0.92392 1.23868 0.90975 0.74104 0.76855 1.90558 1.73577 1.37881 1.42181 1.84445 1.27217 1.72148 1.49804 1.50385 1.16798 1.24539 1.21330 1.26838 0.99469 0.86357 0.87060 1.70575 1.05464 1.27365 1.22362 1.18158 0.93993 0.94780 0.93325 1.22894 0.91267 0.93528 0.91326 1.81246 1.08777 1.07293 1.09333 1.78442 1.04315 1.23145 1.06144 0.87321 0.87992 0.88903 0.91837 0.85555 0.89010 0.73013 0.71180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 8.63 71.98 0.62 -2.45 16 2 C 0.16 4.93 2.95 44.25 0.13 5.06 16 3 H 0.12 4.14 7.68 -2.39 -0.02 4.12 16 4 C 0.45 18.53 6.69 87.66 0.59 19.12 16 5 O -0.62 -29.04 16.02 -3.08 -0.05 -29.09 16 6 N -0.43 -18.19 2.19 -639.58 -1.40 -19.59 16 7 C -0.36 -14.57 8.39 84.04 0.71 -13.86 16 8 H 0.14 4.67 4.79 -2.91 -0.01 4.66 16 9 C 0.00 -0.05 5.07 84.93 0.43 0.38 16 10 N -0.90 -42.41 8.95 21.66 0.19 -42.22 16 11 Si 0.99 33.64 29.57 68.60 2.03 35.67 16 12 H -0.24 -7.03 7.11 99.48 0.71 -6.32 16 13 H -0.28 -9.45 7.11 99.48 0.71 -8.74 16 14 H -0.30 -10.94 7.11 99.48 0.71 -10.24 16 15 C 0.16 6.71 5.14 85.63 0.44 7.15 16 16 C 0.50 23.08 6.43 71.24 0.46 23.54 16 17 O -0.55 -29.93 16.62 21.97 0.37 -29.56 16 18 O -0.52 -19.81 13.42 -51.35 -0.69 -20.50 16 19 N -0.34 -10.96 3.13 -335.02 -1.05 -12.01 16 20 C 0.30 7.78 11.56 180.36 2.09 9.87 16 21 N -0.53 -16.16 11.22 -197.52 -2.22 -18.37 16 22 C 0.28 9.48 7.82 135.87 1.06 10.55 16 23 C 0.33 10.84 16.01 88.33 1.41 12.25 16 24 N -0.39 -12.92 18.54 19.00 0.35 -12.57 16 25 N -0.29 -10.68 12.75 -55.97 -0.71 -11.39 16 26 H 0.11 2.24 5.61 -2.39 -0.01 2.23 16 27 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 1.39 6.91 -2.38 -0.02 1.37 16 29 H 0.27 12.45 8.31 -92.70 -0.77 11.68 16 30 H 0.13 5.37 6.51 -2.39 -0.02 5.36 16 31 H 0.09 3.68 7.60 -2.38 -0.02 3.66 16 32 H 0.41 12.05 9.10 -74.05 -0.67 11.38 16 33 H 0.27 4.03 7.16 -2.91 -0.02 4.01 16 Total: -1.00 -68.73 304.21 5.29 -63.43 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.54 Total: 24.60 kcal Atomic # 6 Polarization: 63.68 SS G_CDS: 7.93 Total: 71.61 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -4.83 Total: -116.16 kcal Atomic # 8 Polarization: -78.78 SS G_CDS: -0.37 Total: -79.15 kcal Atomic # 14 Polarization: 33.64 SS G_CDS: 2.03 Total: 35.67 kcal Total: -68.73 5.29 -63.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589341472.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.708 kcal (2) G-P(sol) polarization free energy of solvation -68.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds