Wall clock time and date at job start Fri Apr 10 2020 14:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47189 * 2 1 4 4 C 1.53001 * 109.47287 * 120.00094 * 2 1 3 5 5 N 1.46503 * 109.47051 * 64.99968 * 4 2 1 6 6 C 1.36884 * 127.17453 * 89.97749 * 5 4 2 7 7 S 1.76204 * 126.36790 * 359.96190 * 6 5 4 8 8 C 1.76198 * 99.99829 * 180.02562 * 7 6 5 9 9 H 1.07999 * 120.00293 * 359.97438 * 8 7 6 10 10 C 1.38545 * 119.99701 * 179.97438 * 8 7 6 11 11 N 1.31715 * 120.00023 * 359.72870 * 10 8 7 12 12 Si 1.86795 * 119.99968 * 180.02562 * 10 8 7 13 13 H 1.48491 * 109.47215 * 89.99973 * 12 10 8 14 14 H 1.48500 * 109.47225 * 210.00523 * 12 10 8 15 15 H 1.48502 * 109.47297 * 329.99955 * 12 10 8 16 16 N 1.31585 * 107.26268 * 180.22763 * 6 5 4 17 17 N 1.28510 * 110.10667 * 359.61256 * 16 6 5 18 18 C 1.31802 * 109.93105 * 0.39475 * 17 16 6 19 19 C 1.46958 * 126.47660 * 179.75697 * 18 17 16 20 20 C 1.36412 * 125.97151 * 344.72478 * 19 18 17 21 21 C 1.40716 * 106.71644 * 179.85052 * 20 19 18 22 22 C 1.34869 * 107.09419 * 0.40410 * 21 20 19 23 23 O 1.34294 * 108.73962 * 359.74842 * 22 21 20 24 24 H 1.09003 * 109.47231 * 299.99685 * 1 2 3 25 25 H 1.08989 * 109.47425 * 60.00000 * 1 2 3 26 26 H 1.09007 * 109.47124 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47334 * 239.99539 * 2 1 3 28 28 H 1.09001 * 109.47066 * 179.97438 * 3 2 1 29 29 H 1.08989 * 109.46938 * 300.00299 * 3 2 1 30 30 H 1.09003 * 109.46777 * 60.00037 * 3 2 1 31 31 H 1.09002 * 109.47358 * 305.00424 * 4 2 1 32 32 H 1.08996 * 109.47408 * 184.99559 * 4 2 1 33 33 H 0.97000 * 119.99652 * 180.02562 * 11 10 8 34 34 H 1.07996 * 126.63801 * 359.97438 * 20 19 18 35 35 H 1.08005 * 126.45060 * 180.17682 * 21 20 19 36 36 H 1.08003 * 125.63062 * 179.72885 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 2.3654 -3.1642 0.6411 7 16 3.9407 -3.0461 -0.1395 8 6 4.1938 -4.7347 -0.5745 9 1 3.4463 -5.4740 -0.3274 10 6 5.3520 -5.1141 -1.2335 11 7 6.2612 -4.2117 -1.5396 12 14 5.6201 -6.9041 -1.6953 13 1 5.0637 -7.1547 -3.0490 14 1 7.0747 -7.2029 -1.6948 15 1 4.9351 -7.7778 -0.7090 16 7 1.6531 -4.2592 0.7993 17 7 0.5563 -3.9881 1.4118 18 6 0.4963 -2.6983 1.6761 19 6 -0.5990 -1.9967 2.3601 20 6 -1.8528 -2.4880 2.5779 21 6 -2.5658 -1.4878 3.2644 22 6 -1.7285 -0.4426 3.4238 23 8 -0.5420 -0.7529 2.8768 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2951 33 1 7.0719 -4.4773 -2.0014 34 1 -2.2253 -3.4577 2.2826 35 1 -3.5917 -1.5449 3.5974 36 1 -1.9722 0.4902 3.9107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078883448.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:13:20 Heat of formation + Delta-G solvation = 56.645326 kcal Electronic energy + Delta-G solvation = -21199.054326 eV Core-core repulsion = 18004.422645 eV Total energy + Delta-G solvation = -3194.631680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.90304 -43.23238 -38.01305 -34.78013 -34.31082 -34.13763 -32.74268 -29.60337 -28.22450 -27.80615 -27.75110 -24.14928 -23.94446 -22.27889 -21.65267 -21.31701 -19.90595 -19.01140 -17.75916 -17.59215 -17.05513 -16.93622 -16.59028 -16.22233 -15.83334 -14.98323 -14.96512 -14.17002 -13.94679 -13.87739 -13.52880 -13.49069 -13.24580 -13.03613 -13.01157 -12.94560 -12.69379 -12.47038 -12.09369 -12.05267 -11.87644 -11.72275 -11.58108 -11.17223 -11.03412 -10.89030 -10.82323 -9.47891 -8.62547 -8.54023 -6.32998 -0.03179 0.62715 1.06168 1.36348 1.39256 1.50219 1.52660 1.60576 1.80773 2.07332 2.11488 2.86987 2.98227 3.40017 3.56490 3.66900 3.94933 4.03301 4.10590 4.14291 4.27941 4.34862 4.51959 4.58008 4.74120 4.81374 4.88844 4.92587 4.97178 5.00949 5.05061 5.11936 5.29670 5.34789 5.45244 5.54461 5.76728 6.04924 6.20032 6.94097 7.60894 8.55304 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.022236 B = 0.004786 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.894903 B = 5849.354423 C = 6845.768885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.134 4.134 4 C 0.106 3.894 5 N -0.461 5.461 6 C 0.163 3.837 7 S 0.134 5.866 8 C -0.563 4.563 9 H 0.085 0.915 10 C 0.035 3.965 11 N -0.903 5.903 12 Si 0.994 3.006 13 H -0.265 1.265 14 H -0.264 1.264 15 H -0.272 1.272 16 N -0.340 5.340 17 N -0.301 5.301 18 C 0.232 3.768 19 C 0.030 3.970 20 C -0.153 4.153 21 C -0.216 4.216 22 C -0.005 4.005 23 O -0.177 6.177 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.021 0.979 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.281 0.719 34 H 0.150 0.850 35 H 0.185 0.815 36 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.452 14.988 7.870 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.129 4.129 3 C -0.191 4.191 4 C -0.015 4.015 5 N -0.156 5.156 6 C -0.210 4.210 7 S 0.365 5.635 8 C -0.711 4.711 9 H 0.103 0.897 10 C -0.171 4.171 11 N -0.538 5.538 12 Si 0.815 3.185 13 H -0.190 1.190 14 H -0.188 1.188 15 H -0.197 1.197 16 N -0.185 5.185 17 N -0.144 5.144 18 C -0.035 4.035 19 C -0.022 4.022 20 C -0.176 4.176 21 C -0.235 4.235 22 C -0.074 4.074 23 O -0.072 6.072 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.167 0.833 35 H 0.202 0.798 36 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -12.608 14.704 7.485 20.765 hybrid contribution -0.143 -1.326 -0.186 1.347 sum -12.751 13.378 7.299 19.871 Atomic orbital electron populations 1.21839 0.94101 1.00371 1.03299 1.21467 0.97133 0.98315 0.95950 1.21709 1.01540 0.92190 1.03705 1.22417 1.02447 0.74810 1.01802 1.46683 1.14798 1.09780 1.44306 1.28141 1.03680 0.86337 1.02823 1.83050 1.02332 1.14275 1.63807 1.23322 1.09075 0.93756 1.44949 0.89698 1.25873 0.93669 1.03971 0.93601 1.70026 1.09418 1.35723 1.38666 0.85015 0.78082 0.76447 0.78920 1.19035 1.18814 1.19652 1.74692 1.01248 1.23067 1.19536 1.74281 1.14576 1.10389 1.15137 1.21620 0.88209 0.90122 1.03501 1.18044 0.92472 0.85688 1.05960 1.22057 0.91666 1.02028 1.01853 1.22097 1.03122 0.93200 1.05045 1.25244 0.80855 1.02283 0.98994 1.84068 1.36792 1.28134 1.58248 0.90474 0.91123 0.96013 0.92784 0.91978 0.90837 0.90344 0.86419 0.88367 0.90933 0.83262 0.79784 0.72635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 7.98 71.98 0.57 -2.81 16 2 C -0.11 -2.83 3.13 -10.79 -0.03 -2.87 16 3 C -0.13 -2.42 9.19 71.98 0.66 -1.75 16 4 C 0.11 3.14 5.24 86.38 0.45 3.60 16 5 N -0.46 -18.34 2.64 -515.01 -1.36 -19.70 16 6 C 0.16 8.00 8.06 179.35 1.45 9.45 16 7 S 0.13 6.94 21.39 -56.49 -1.21 5.73 16 8 C -0.56 -32.83 9.36 67.89 0.64 -32.19 16 9 H 0.08 5.20 6.92 -2.91 -0.02 5.18 16 10 C 0.04 1.96 5.49 84.78 0.47 2.43 16 11 N -0.90 -50.79 13.22 21.60 0.29 -50.51 16 12 Si 0.99 44.32 29.55 68.60 2.03 46.35 16 13 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 14 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 16 N -0.34 -18.23 11.02 -56.47 -0.62 -18.85 16 17 N -0.30 -14.47 12.23 -51.20 -0.63 -15.09 16 18 C 0.23 9.32 6.68 135.80 0.91 10.23 16 19 C 0.03 0.92 5.59 24.13 0.13 1.05 16 20 C -0.15 -3.98 10.85 22.45 0.24 -3.74 16 21 C -0.22 -3.58 10.88 22.10 0.24 -3.34 16 22 C -0.01 -0.08 12.08 67.05 0.81 0.73 16 23 O -0.18 -4.02 7.38 -7.35 -0.05 -4.08 16 24 H 0.08 1.55 6.82 -2.39 -0.02 1.54 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.02 0.66 5.95 -2.38 -0.01 0.64 16 27 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.12 2.90 6.57 -2.39 -0.02 2.88 16 32 H 0.10 2.91 7.86 -2.39 -0.02 2.89 16 33 H 0.28 14.59 8.32 -92.71 -0.77 13.82 16 34 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 35 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.26 0.73 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -73.98 320.59 6.08 -67.90 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 1.10 Total: 7.47 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 6.54 Total: -19.21 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -2.32 Total: -104.15 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -0.05 Total: -4.08 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 6.94 SS G_CDS: -1.21 Total: 5.73 kcal Total: -73.98 6.08 -67.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078883448.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.543 kcal (2) G-P(sol) polarization free energy of solvation -73.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds