Wall clock time and date at job start Fri Apr 10 2020 14:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00202 * 2 1 4 4 H 1.48500 * 109.47270 * 239.99459 * 3 2 1 5 5 H 1.48492 * 109.47152 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47148 * 119.99547 * 3 2 1 7 7 C 1.38810 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00768 * 189.09983 * 7 2 1 9 9 N 1.36937 * 119.99994 * 9.10173 * 7 2 1 10 10 C 1.48147 * 127.83809 * 15.59663 * 9 7 2 11 11 C 1.54384 * 104.62345 * 140.39531 * 10 9 7 12 12 H 1.08998 * 118.18370 * 244.20630 * 11 10 9 13 13 C 1.52997 * 118.12809 * 87.18511 * 11 10 9 14 14 H 1.09004 * 117.43902 * 16.06780 * 13 11 10 15 15 C 1.52996 * 117.44448 * 160.81017 * 13 11 10 16 16 N 1.46505 * 109.47203 * 185.00000 * 15 13 11 17 17 C 1.34771 * 119.99875 * 179.97438 * 16 15 13 18 18 O 1.21686 * 120.00445 * 0.02562 * 17 16 15 19 19 C 1.46685 * 119.99818 * 180.02562 * 17 16 15 20 20 C 1.35670 * 126.12962 * 179.71806 * 19 17 16 21 21 N 1.30943 * 114.18661 * 179.78980 * 20 19 17 22 22 C 1.29423 * 117.36518 * 0.51994 * 21 20 19 23 23 S 1.70952 * 110.39333 * 359.71325 * 22 21 20 24 24 C 1.52995 * 60.55945 * 268.46233 * 13 11 10 25 25 H 1.09002 * 119.54474 * 248.23140 * 24 13 11 26 26 C 1.48148 * 127.84258 * 195.56925 * 9 7 2 27 27 H 0.96999 * 119.99692 * 0.02562 * 1 2 3 28 28 H 1.09001 * 110.40668 * 21.60668 * 10 9 7 29 29 H 1.09010 * 110.40639 * 259.17891 * 10 9 7 30 30 H 1.08995 * 109.47333 * 305.00413 * 15 13 11 31 31 H 1.09006 * 109.47124 * 65.00364 * 15 13 11 32 32 H 0.96996 * 119.99995 * 0.02562 * 16 15 13 33 33 H 1.07993 * 122.90432 * 359.96438 * 20 19 17 34 34 H 1.08000 * 124.80359 * 179.68647 * 22 21 20 35 35 H 1.09000 * 110.41069 * 100.81896 * 26 9 7 36 36 H 1.09009 * 110.50408 * 338.43711 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2081 0.1485 9 7 1.3384 -2.3806 -0.1865 10 6 -0.0341 -2.5710 -0.7107 11 6 0.0641 -3.8172 -1.6168 12 1 -0.1225 -3.6939 -2.6836 13 6 -0.1181 -5.1931 -0.9732 14 1 -0.5676 -5.2279 0.0193 15 6 -0.4670 -6.3626 -1.8959 16 7 -0.7173 -7.5614 -1.0918 17 6 -1.0447 -8.7212 -1.6950 18 8 -1.1319 -8.7729 -2.9077 19 6 -1.2959 -9.9213 -0.8899 20 6 -1.6371 -11.1458 -1.3641 21 7 -1.8017 -12.0540 -0.4353 22 6 -1.6346 -11.6850 0.7939 23 16 -1.2160 -10.0291 0.8671 24 6 1.2863 -4.5975 -1.0897 25 1 2.0101 -5.0555 -1.7639 26 6 1.8194 -3.7546 0.0888 27 1 -0.4849 0.8401 -0.0004 28 1 -0.3430 -1.7020 -1.2916 29 1 -0.7319 -2.7500 0.1074 30 1 -1.3599 -6.1178 -2.4710 31 1 0.3639 -6.5487 -2.5766 32 1 -0.6481 -7.5201 -0.1252 33 1 -1.7594 -11.3541 -2.4166 34 1 -1.7445 -12.3315 1.6520 35 1 1.4111 -4.1185 1.0316 36 1 2.9089 -3.7802 0.1121 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977899182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:05 Heat of formation + Delta-G solvation = 73.052157 kcal Electronic energy + Delta-G solvation = -19973.184595 eV Core-core repulsion = 16779.264368 eV Total energy + Delta-G solvation = -3193.920227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44231 -39.44895 -38.66225 -35.11670 -33.42596 -31.36117 -30.65815 -27.74611 -27.16669 -26.19600 -24.81999 -22.07219 -21.23237 -20.51672 -19.99065 -19.33682 -18.94489 -17.15055 -16.83656 -16.24517 -15.69314 -15.26698 -14.73107 -14.60385 -14.38567 -14.32572 -13.92449 -13.65432 -13.15082 -12.82265 -12.70403 -11.99346 -11.90095 -11.29260 -11.15701 -10.84346 -10.70910 -10.55524 -10.34328 -10.19112 -10.13756 -9.96903 -9.77218 -9.54409 -9.47123 -9.20460 -9.04111 -8.67096 -6.90317 -5.82860 -3.17345 -0.14304 0.77796 1.16341 2.11936 2.85824 2.91924 3.36768 3.41622 3.42685 3.86294 4.07699 4.43534 4.53545 4.72768 4.81476 4.93118 5.23181 5.33506 5.39923 5.44456 5.65860 5.72268 5.81317 5.84795 5.91617 6.17031 6.18595 6.49838 6.60956 6.65565 6.87217 7.11011 7.24300 7.31793 7.49410 7.68352 7.87968 8.17779 9.07865 9.70686 10.47434 11.31417 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.040949 B = 0.002648 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.607637 B =10571.676472 C =10892.373493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.183 3.817 11 C -0.159 4.159 12 H 0.104 0.896 13 C -0.153 4.153 14 H 0.103 0.897 15 C 0.155 3.845 16 N -0.716 5.716 17 C 0.594 3.406 18 O -0.527 6.527 19 C -0.287 4.287 20 C 0.113 3.887 21 N -0.477 5.477 22 C 0.030 3.970 23 S 0.173 5.827 24 C -0.171 4.171 25 H 0.104 0.896 26 C 0.154 3.846 27 H 0.255 0.745 28 H 0.091 0.909 29 H 0.024 0.976 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.400 0.600 33 H 0.189 0.811 34 H 0.206 0.794 35 H 0.024 0.976 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.457 -20.796 2.146 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.317 5.317 10 C 0.058 3.942 11 C -0.180 4.180 12 H 0.122 0.878 13 C -0.172 4.172 14 H 0.121 0.879 15 C 0.032 3.968 16 N -0.367 5.367 17 C 0.378 3.622 18 O -0.405 6.405 19 C -0.411 4.411 20 C -0.044 4.044 21 N -0.190 5.190 22 C -0.264 4.264 23 S 0.427 5.573 24 C -0.191 4.191 25 H 0.122 0.878 26 C 0.028 3.972 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.235 0.765 33 H 0.206 0.794 34 H 0.223 0.777 35 H 0.041 0.959 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.446 -20.380 2.081 20.774 hybrid contribution 0.343 0.545 -0.337 0.727 sum -3.103 -19.835 1.744 20.152 Atomic orbital electron populations 1.69883 1.05067 1.25589 1.55656 1.24897 0.95652 0.97995 1.01686 0.86185 0.78554 0.82897 0.78028 1.21055 1.21520 1.20975 1.18953 0.90796 0.82375 1.43568 0.90617 1.45193 1.13340 0.99980 1.73222 1.21074 0.86860 0.92722 0.93571 1.24245 1.02011 0.91586 1.00153 0.87773 1.22526 1.00589 0.93817 1.00262 0.87877 1.20964 1.01494 0.81660 0.92672 1.45954 1.70302 1.09656 1.10758 1.16693 0.77196 0.81513 0.86800 1.90856 1.52073 1.84636 1.12940 1.25887 1.17727 1.00676 0.96803 1.22280 0.95198 0.85980 1.00948 1.66275 1.17670 1.35386 0.99634 1.28854 1.01222 0.97630 0.98733 1.84111 1.61085 1.09899 1.02208 1.24016 0.89776 1.02567 1.02768 0.87835 1.21138 0.97183 0.86023 0.92905 0.93471 0.89115 0.95844 0.90631 0.90956 0.76536 0.79390 0.77721 0.95852 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.46 10.87 55.49 0.60 -25.86 16 2 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.68 29.56 -169.99 -5.03 16.65 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 8 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 9 N -0.59 -14.93 3.38 -168.85 -0.57 -15.50 16 10 C 0.18 4.29 5.70 -2.41 -0.01 4.28 16 11 C -0.16 -2.91 6.85 -89.22 -0.61 -3.52 16 12 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 13 C -0.15 -2.24 5.39 -90.63 -0.49 -2.73 16 14 H 0.10 1.49 8.04 -51.93 -0.42 1.08 16 15 C 0.15 2.01 5.95 -4.04 -0.02 1.98 16 16 N -0.72 -8.22 5.55 -61.62 -0.34 -8.56 16 17 C 0.59 7.50 7.79 -12.85 -0.10 7.40 16 18 O -0.53 -8.38 16.87 5.20 0.09 -8.30 16 19 C -0.29 -2.93 6.49 -37.09 -0.24 -3.17 16 20 C 0.11 1.15 11.09 -18.85 -0.21 0.94 16 21 N -0.48 -4.54 10.51 -15.38 -0.16 -4.70 16 22 C 0.03 0.20 12.22 51.75 0.63 0.83 16 23 S 0.17 1.20 22.35 -107.50 -2.40 -1.21 16 24 C -0.17 -2.91 6.74 -89.22 -0.60 -3.51 16 25 H 0.10 1.63 8.12 -51.93 -0.42 1.20 16 26 C 0.15 3.12 7.04 -2.41 -0.02 3.10 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.09 2.39 6.51 -51.93 -0.34 2.05 16 29 H 0.02 0.58 8.14 -51.92 -0.42 0.15 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 32 H 0.40 3.81 7.59 -40.82 -0.31 3.50 16 33 H 0.19 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.21 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 LS Contribution 322.60 15.07 4.86 4.86 Total: -1.00 -32.37 322.60 -9.28 -41.65 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.41 Total: 2.04 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -1.92 Total: -1.09 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.47 Total: -54.62 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.40 Total: -1.21 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.37 -9.28 -41.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977899182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.701 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds