Wall clock time and date at job start Fri Apr 10 2020 14:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00202 * 2 1 4 4 H 1.48500 * 109.47270 * 239.99459 * 3 2 1 5 5 H 1.48492 * 109.47152 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47148 * 119.99547 * 3 2 1 7 7 C 1.38810 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00768 * 189.09983 * 7 2 1 9 9 N 1.36937 * 119.99994 * 9.10173 * 7 2 1 10 10 C 1.48147 * 127.83809 * 15.59663 * 9 7 2 11 11 C 1.54384 * 104.62345 * 140.39531 * 10 9 7 12 12 H 1.08998 * 118.18370 * 244.20630 * 11 10 9 13 13 C 1.52997 * 118.12809 * 87.18511 * 11 10 9 14 14 H 1.09004 * 117.43902 * 16.06780 * 13 11 10 15 15 C 1.52996 * 117.44448 * 160.81017 * 13 11 10 16 16 N 1.46505 * 109.47203 * 185.00000 * 15 13 11 17 17 C 1.34771 * 119.99875 * 179.97438 * 16 15 13 18 18 O 1.21686 * 120.00445 * 0.02562 * 17 16 15 19 19 C 1.46685 * 119.99818 * 180.02562 * 17 16 15 20 20 C 1.35670 * 126.12962 * 179.71806 * 19 17 16 21 21 N 1.30943 * 114.18661 * 179.78980 * 20 19 17 22 22 C 1.29423 * 117.36518 * 0.51994 * 21 20 19 23 23 S 1.70952 * 110.39333 * 359.71325 * 22 21 20 24 24 C 1.52995 * 60.55945 * 268.46233 * 13 11 10 25 25 H 1.09002 * 119.54474 * 248.23140 * 24 13 11 26 26 C 1.48148 * 127.84258 * 195.56925 * 9 7 2 27 27 H 0.96999 * 119.99692 * 0.02562 * 1 2 3 28 28 H 1.09001 * 110.40668 * 21.60668 * 10 9 7 29 29 H 1.09010 * 110.40639 * 259.17891 * 10 9 7 30 30 H 1.08995 * 109.47333 * 305.00413 * 15 13 11 31 31 H 1.09006 * 109.47124 * 65.00364 * 15 13 11 32 32 H 0.96996 * 119.99995 * 0.02562 * 16 15 13 33 33 H 1.07993 * 122.90432 * 359.96438 * 20 19 17 34 34 H 1.08000 * 124.80359 * 179.68647 * 22 21 20 35 35 H 1.09000 * 110.41069 * 100.81896 * 26 9 7 36 36 H 1.09009 * 110.50408 * 338.43711 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0800 -1.2081 0.1485 9 7 1.3384 -2.3806 -0.1865 10 6 -0.0341 -2.5710 -0.7107 11 6 0.0641 -3.8172 -1.6168 12 1 -0.1225 -3.6939 -2.6836 13 6 -0.1181 -5.1931 -0.9732 14 1 -0.5676 -5.2279 0.0193 15 6 -0.4670 -6.3626 -1.8959 16 7 -0.7173 -7.5614 -1.0918 17 6 -1.0447 -8.7212 -1.6950 18 8 -1.1319 -8.7729 -2.9077 19 6 -1.2959 -9.9213 -0.8899 20 6 -1.6371 -11.1458 -1.3641 21 7 -1.8017 -12.0540 -0.4353 22 6 -1.6346 -11.6850 0.7939 23 16 -1.2160 -10.0291 0.8671 24 6 1.2863 -4.5975 -1.0897 25 1 2.0101 -5.0555 -1.7639 26 6 1.8194 -3.7546 0.0888 27 1 -0.4849 0.8401 -0.0004 28 1 -0.3430 -1.7020 -1.2916 29 1 -0.7319 -2.7500 0.1074 30 1 -1.3599 -6.1178 -2.4710 31 1 0.3639 -6.5487 -2.5766 32 1 -0.6481 -7.5201 -0.1252 33 1 -1.7594 -11.3541 -2.4166 34 1 -1.7445 -12.3315 1.6520 35 1 1.4111 -4.1185 1.0316 36 1 2.9089 -3.7802 0.1121 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977899182.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:11:05 Heat of formation + Delta-G solvation = 50.864314 kcal Electronic energy + Delta-G solvation = -19974.146732 eV Core-core repulsion = 16779.264368 eV Total energy + Delta-G solvation = -3194.882364 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28976 -40.55526 -39.88173 -36.41627 -35.06220 -32.84869 -31.77149 -29.07722 -28.82783 -27.28242 -26.20992 -23.24217 -22.55063 -21.78654 -20.90004 -20.84409 -19.82314 -18.82630 -17.94069 -17.20363 -16.83088 -16.63583 -16.16102 -15.70655 -15.44658 -15.15491 -14.96998 -14.88297 -14.62822 -14.46938 -14.14350 -13.37110 -13.18294 -12.89977 -12.68741 -12.62892 -12.34566 -11.99025 -11.96308 -11.76544 -11.52540 -10.96620 -10.80253 -10.74540 -10.63746 -10.56711 -10.18038 -10.04494 -8.90238 -7.91599 -5.27662 -0.79617 0.17543 0.56073 1.38594 1.46610 1.49756 1.56213 1.90231 2.06917 2.47934 2.71791 3.25666 3.31789 3.58892 3.67172 3.75147 3.84430 4.10800 4.19659 4.26154 4.34200 4.42752 4.56243 4.62809 4.70594 4.93827 4.99595 5.02949 5.10910 5.32584 5.36630 5.45258 5.53574 5.67044 6.18569 6.28132 6.54975 6.95863 7.01518 7.68904 8.46966 9.21935 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.040949 B = 0.002648 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.607637 B =10571.676472 C =10892.373493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.979 3.021 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.621 5.621 10 C 0.188 3.812 11 C -0.174 4.174 12 H 0.114 0.886 13 C -0.112 4.112 14 H 0.111 0.889 15 C 0.163 3.837 16 N -0.708 5.708 17 C 0.596 3.404 18 O -0.568 6.568 19 C -0.319 4.319 20 C 0.112 3.888 21 N -0.506 5.506 22 C 0.044 3.956 23 S 0.224 5.776 24 C -0.161 4.161 25 H 0.125 0.875 26 C 0.148 3.852 27 H 0.250 0.750 28 H 0.052 0.948 29 H 0.003 0.997 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.411 0.589 33 H 0.184 0.816 34 H 0.245 0.755 35 H 0.029 0.971 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.785 -22.607 3.242 23.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.256 4.256 3 Si 0.807 3.193 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.345 5.345 10 C 0.063 3.937 11 C -0.195 4.195 12 H 0.132 0.868 13 C -0.131 4.131 14 H 0.129 0.871 15 C 0.040 3.960 16 N -0.360 5.360 17 C 0.382 3.618 18 O -0.449 6.449 19 C -0.443 4.443 20 C -0.046 4.046 21 N -0.219 5.219 22 C -0.250 4.250 23 S 0.479 5.521 24 C -0.180 4.180 25 H 0.143 0.857 26 C 0.023 3.977 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.021 0.979 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.248 0.752 33 H 0.201 0.799 34 H 0.261 0.739 35 H 0.047 0.953 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.752 -22.220 3.220 22.620 hybrid contribution 0.126 1.015 -0.560 1.166 sum -2.626 -21.205 2.660 21.532 Atomic orbital electron populations 1.70080 1.06483 1.25803 1.57098 1.25728 0.96500 1.01260 1.02121 0.85149 0.77227 0.78602 0.78325 1.20421 1.21998 1.19972 1.19347 0.91349 0.83718 1.42695 0.90192 1.45514 1.13892 1.01220 1.73855 1.20806 0.86026 0.93701 0.93188 1.23924 1.04469 0.91174 0.99900 0.86770 1.22403 0.98249 0.92067 1.00341 0.87130 1.20774 1.01572 0.81433 0.92241 1.45799 1.69968 1.08969 1.11221 1.16941 0.76254 0.82128 0.86488 1.90830 1.53908 1.85358 1.14767 1.25677 1.19887 0.99720 0.99064 1.22335 0.94756 0.86256 1.01273 1.66334 1.19416 1.35609 1.00560 1.29576 0.98350 0.98177 0.98900 1.83917 1.59931 1.09489 0.98768 1.23949 0.90541 1.02180 1.01357 0.85723 1.21300 0.97738 0.84257 0.94388 0.94119 0.92918 0.97864 0.90679 0.90787 0.75233 0.79922 0.73909 0.95292 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.45 10.87 21.65 0.24 -56.21 16 2 C -0.06 -3.51 5.40 84.86 0.46 -3.05 16 3 Si 0.98 45.10 29.56 68.60 2.03 47.13 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.24 -13.47 10.35 84.03 0.87 -12.60 16 8 H 0.08 4.24 7.85 -2.91 -0.02 4.22 16 9 N -0.62 -31.50 3.38 -688.12 -2.33 -33.82 16 10 C 0.19 9.04 5.70 86.53 0.49 9.53 16 11 C -0.17 -6.23 6.85 -9.89 -0.07 -6.30 16 12 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 13 C -0.11 -3.03 5.39 -10.80 -0.06 -3.09 16 14 H 0.11 2.92 8.04 -2.38 -0.02 2.90 16 15 C 0.16 3.87 5.95 86.38 0.51 4.39 16 16 N -0.71 -14.76 5.55 -467.08 -2.59 -17.35 16 17 C 0.60 14.35 7.79 86.45 0.67 15.02 16 18 O -0.57 -17.90 16.87 -4.31 -0.07 -17.97 16 19 C -0.32 -6.05 6.49 23.88 0.15 -5.90 16 20 C 0.11 2.18 11.09 84.23 0.93 3.11 16 21 N -0.51 -8.67 10.51 -202.57 -2.13 -10.80 16 22 C 0.04 0.44 12.22 130.60 1.60 2.03 16 23 S 0.22 2.42 22.35 -56.49 -1.26 1.16 16 24 C -0.16 -5.13 6.74 -9.89 -0.07 -5.19 16 25 H 0.12 3.52 8.12 -2.39 -0.02 3.50 16 26 C 0.15 5.84 7.04 86.54 0.61 6.45 16 27 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 28 H 0.05 2.90 6.51 -2.39 -0.02 2.89 16 29 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 1.81 7.94 -2.38 -0.02 1.79 16 32 H 0.41 6.68 7.59 -92.71 -0.70 5.97 16 33 H 0.18 3.50 8.06 -2.91 -0.02 3.47 16 34 H 0.24 0.29 8.06 -2.91 -0.02 0.27 16 35 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -72.10 322.60 0.40 -71.70 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.41 Total: 11.76 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 6.11 Total: 4.40 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -6.81 Total: -118.19 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.07 Total: -17.97 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.26 Total: 1.16 kcal Total: -72.10 0.40 -71.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977899182.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.563 kcal (2) G-P(sol) polarization free energy of solvation -72.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds