Wall clock time and date at job start Fri Apr 10 2020 14:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.35349 * 126.38189 * 214.99799 * 4 2 1 6 6 C 1.41548 * 105.50049 * 179.97438 * 5 4 2 7 7 C 1.47588 * 126.52199 * 180.02562 * 6 5 4 8 8 O 1.21492 * 119.99609 * 0.02562 * 7 6 5 9 9 O 1.34727 * 119.99796 * 180.02562 * 7 6 5 10 10 C 1.45205 * 116.99789 * 180.02562 * 9 7 6 11 11 C 1.50694 * 109.47170 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99779 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00287 * 179.97438 * 11 10 9 14 14 C 1.46492 * 120.00031 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47176 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99849 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00283 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99952 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00010 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47342 * 89.99926 * 19 17 15 21 21 H 1.48501 * 109.47380 * 210.00083 * 19 17 15 22 22 H 1.48507 * 109.47146 * 329.99785 * 19 17 15 23 23 N 1.31855 * 106.95535 * 0.02562 * 6 5 4 24 24 N 1.28475 * 110.05970 * 359.71072 * 23 6 5 25 25 H 0.96998 * 124.87507 * 180.29056 * 24 23 6 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 33 33 H 1.07992 * 127.24658 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.47152 * 300.00274 * 10 9 7 35 35 H 1.09000 * 109.46907 * 59.99888 * 10 9 7 36 36 H 0.96997 * 119.99756 * 0.02562 * 13 11 10 37 37 H 1.09007 * 109.47479 * 300.00235 * 14 13 11 38 38 H 1.09000 * 109.47368 * 60.00730 * 14 13 11 39 39 H 0.97002 * 119.99878 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 3.1416 -1.4814 -1.3156 6 6 3.1925 -1.9237 -2.6593 7 6 4.2207 -2.7968 -3.2582 8 8 5.1393 -3.2084 -2.5779 9 8 4.1405 -3.1374 -4.5592 10 6 5.1862 -3.9995 -5.0806 11 6 4.9314 -4.2715 -6.5407 12 8 3.9641 -3.7862 -7.0882 13 7 5.7790 -5.0533 -7.2385 14 6 5.5310 -5.3182 -8.6577 15 6 6.6163 -6.2128 -9.1989 16 1 7.4111 -6.5506 -8.5503 17 6 6.5947 -6.6001 -10.5220 18 7 7.5421 -7.3804 -10.9944 19 14 5.2205 -6.0152 -11.6440 20 1 5.6148 -4.7341 -12.2833 21 1 4.9701 -7.0356 -12.6934 22 1 3.9840 -5.8109 -10.8473 23 7 2.1466 -1.4072 -3.2740 24 7 1.4565 -0.7011 -2.4519 25 1 0.6406 -0.2274 -2.6769 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 3.8405 -1.7107 -0.5250 34 1 6.1527 -3.5089 -4.9652 35 1 5.1886 -4.9408 -4.5310 36 1 6.5529 -5.4411 -6.8007 37 1 4.5648 -5.8096 -8.7723 38 1 5.5276 -4.3772 -9.2078 39 1 7.5271 -7.6525 -11.9253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051368365.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:15 Heat of formation + Delta-G solvation = -56.938336 kcal Electronic energy + Delta-G solvation = -22370.118343 eV Core-core repulsion = 18700.496956 eV Total energy + Delta-G solvation = -3669.621387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.12766 -40.32048 -38.75712 -36.33860 -36.25715 -34.32636 -32.42329 -32.32919 -30.34728 -29.41860 -27.80510 -27.21704 -24.75820 -23.16887 -22.05847 -21.39482 -20.29362 -20.06210 -18.11867 -17.59123 -17.24159 -16.75108 -16.48622 -15.91083 -15.66547 -15.34421 -15.03770 -14.60184 -14.47284 -14.10275 -14.02209 -13.59489 -13.14812 -13.08419 -12.84069 -12.52631 -12.33640 -12.03352 -11.99573 -11.84969 -11.72791 -11.08299 -11.04854 -10.88468 -10.80270 -10.68660 -9.97620 -9.81331 -9.51417 -9.37060 -9.28770 -8.79168 -8.22357 -6.21893 -4.24644 1.13023 1.66381 2.16796 2.64525 2.96921 3.09905 3.27619 3.34225 3.42781 3.82073 4.00116 4.14633 4.32022 4.33742 4.47082 4.75696 4.90524 4.97543 5.01897 5.12937 5.16021 5.19625 5.22650 5.23239 5.28098 5.38142 5.42325 5.62755 5.65299 5.93713 6.24270 6.56250 6.77040 7.04514 7.14142 7.34941 7.39783 7.72807 8.08726 8.44940 8.71945 8.84282 9.37437 10.89860 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.041007 B = 0.002331 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.642725 B =12008.719553 C =12518.410023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.026 4.026 3 C -0.148 4.148 4 C 0.020 3.980 5 C -0.169 4.169 6 C 0.003 3.997 7 C 0.555 3.445 8 O -0.500 6.500 9 O -0.314 6.314 10 C 0.049 3.951 11 C 0.502 3.498 12 O -0.533 6.533 13 N -0.700 5.700 14 C 0.222 3.778 15 C -0.545 4.545 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.891 5.891 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.260 1.260 23 N -0.220 5.220 24 N -0.373 5.373 25 H 0.446 0.554 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.167 0.833 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.399 0.601 37 H 0.028 0.972 38 H 0.023 0.977 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.546 16.167 24.928 32.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.046 4.046 3 C -0.205 4.205 4 C -0.105 4.105 5 C -0.197 4.197 6 C -0.155 4.155 7 C 0.397 3.603 8 O -0.386 6.386 9 O -0.228 6.228 10 C -0.029 4.029 11 C 0.285 3.715 12 O -0.411 6.411 13 N -0.351 5.351 14 C 0.100 3.900 15 C -0.583 4.583 16 H 0.099 0.901 17 C -0.126 4.126 18 N -0.528 5.528 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.184 1.184 23 N -0.057 5.057 24 N -0.089 5.089 25 H 0.291 0.709 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.184 0.816 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.233 0.767 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.342 16.254 23.460 31.505 hybrid contribution -0.076 0.116 0.104 0.174 sum -13.418 16.370 23.564 31.675 Atomic orbital electron populations 1.21921 0.94047 1.02690 1.02656 1.19794 0.95989 0.95899 0.92935 1.21889 1.02052 0.94255 1.02348 1.21423 0.96364 1.03479 0.89191 1.21466 0.99801 1.02153 0.96252 1.20688 0.96626 1.05028 0.93204 1.19591 0.82846 0.77581 0.80326 1.90866 1.33003 1.52257 1.62494 1.86694 1.49168 1.61750 1.25167 1.22880 0.90636 0.95373 0.94002 1.19905 0.84082 0.80348 0.87157 1.90716 1.28892 1.50667 1.70781 1.46046 1.27195 1.48837 1.13002 1.19548 0.97780 0.96462 0.76165 1.21076 1.09999 1.30617 0.96602 0.90098 1.24790 0.95872 0.94215 0.97737 1.69879 1.32879 1.34507 1.15554 0.86815 0.83174 0.78912 0.80793 1.19802 1.20869 1.18447 1.73895 1.05011 1.07031 1.19749 1.43447 1.22224 1.36890 1.06301 0.70855 0.91839 0.92758 0.91077 0.88147 0.92574 0.91501 0.91732 0.81567 0.88069 0.88077 0.76707 0.95440 0.95886 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.46 8.94 37.16 0.33 -0.13 16 2 C -0.03 -0.11 3.32 -91.77 -0.30 -0.41 16 3 C -0.15 -0.55 9.18 37.16 0.34 -0.21 16 4 C 0.02 0.15 5.92 -82.21 -0.49 -0.33 16 5 C -0.17 -1.69 10.73 -39.35 -0.42 -2.11 16 6 C 0.00 0.04 7.17 -82.78 -0.59 -0.55 16 7 C 0.55 8.52 7.97 34.54 0.28 8.80 16 8 O -0.50 -7.97 16.72 -19.26 -0.32 -8.29 16 9 O -0.31 -5.39 9.77 -47.25 -0.46 -5.85 16 10 C 0.05 0.75 5.95 36.00 0.21 0.97 16 11 C 0.50 9.98 7.91 -10.99 -0.09 9.89 16 12 O -0.53 -12.87 16.50 -14.11 -0.23 -13.10 16 13 N -0.70 -14.25 5.55 -61.47 -0.34 -14.59 16 14 C 0.22 5.49 4.50 -5.20 -0.02 5.46 16 15 C -0.55 -14.95 9.83 -34.44 -0.34 -15.28 16 16 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 17 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 18 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 19 Si 0.88 21.50 27.47 -169.99 -4.67 16.84 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 23 N -0.22 -2.82 12.24 33.41 0.41 -2.41 16 24 N -0.37 -3.11 6.64 33.50 0.22 -2.89 16 25 H 0.45 2.21 8.13 -190.44 -1.55 0.66 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.05 0.12 7.43 -51.93 -0.39 -0.26 16 28 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.40 6.97 8.32 -40.82 -0.34 6.63 16 37 H 0.03 0.72 7.20 -51.92 -0.37 0.34 16 38 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -35.93 344.45 -7.04 -42.97 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.42 Total: -0.37 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -1.19 Total: 8.20 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 1.06 Total: -45.58 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.02 Total: -27.24 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.93 -7.04 -42.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051368365.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.967 kcal (2) G-P(sol) polarization free energy of solvation -35.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds