Wall clock time and date at job start Fri Apr 10 2020 14:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.35349 * 126.38189 * 214.99799 * 4 2 1 6 6 C 1.41548 * 105.50049 * 179.97438 * 5 4 2 7 7 C 1.47588 * 126.52199 * 180.02562 * 6 5 4 8 8 O 1.21492 * 119.99609 * 0.02562 * 7 6 5 9 9 O 1.34727 * 119.99796 * 180.02562 * 7 6 5 10 10 C 1.45205 * 116.99789 * 180.02562 * 9 7 6 11 11 C 1.50694 * 109.47170 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99779 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00287 * 179.97438 * 11 10 9 14 14 C 1.46492 * 120.00031 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47176 * 180.02562 * 14 13 11 16 16 H 1.08001 * 119.99849 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00283 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99952 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00010 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47342 * 89.99926 * 19 17 15 21 21 H 1.48501 * 109.47380 * 210.00083 * 19 17 15 22 22 H 1.48507 * 109.47146 * 329.99785 * 19 17 15 23 23 N 1.31855 * 106.95535 * 0.02562 * 6 5 4 24 24 N 1.28475 * 110.05970 * 359.71072 * 23 6 5 25 25 H 0.96998 * 124.87507 * 180.29056 * 24 23 6 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 33 33 H 1.07992 * 127.24658 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.47152 * 300.00274 * 10 9 7 35 35 H 1.09000 * 109.46907 * 59.99888 * 10 9 7 36 36 H 0.96997 * 119.99756 * 0.02562 * 13 11 10 37 37 H 1.09007 * 109.47479 * 300.00235 * 14 13 11 38 38 H 1.09000 * 109.47368 * 60.00730 * 14 13 11 39 39 H 0.97002 * 119.99878 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 3.1416 -1.4814 -1.3156 6 6 3.1925 -1.9237 -2.6593 7 6 4.2207 -2.7968 -3.2582 8 8 5.1393 -3.2084 -2.5779 9 8 4.1405 -3.1374 -4.5592 10 6 5.1862 -3.9995 -5.0806 11 6 4.9314 -4.2715 -6.5407 12 8 3.9641 -3.7862 -7.0882 13 7 5.7790 -5.0533 -7.2385 14 6 5.5310 -5.3182 -8.6577 15 6 6.6163 -6.2128 -9.1989 16 1 7.4111 -6.5506 -8.5503 17 6 6.5947 -6.6001 -10.5220 18 7 7.5421 -7.3804 -10.9944 19 14 5.2205 -6.0152 -11.6440 20 1 5.6148 -4.7341 -12.2833 21 1 4.9701 -7.0356 -12.6934 22 1 3.9840 -5.8109 -10.8473 23 7 2.1466 -1.4072 -3.2740 24 7 1.4565 -0.7011 -2.4519 25 1 0.6406 -0.2274 -2.6769 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 3.8405 -1.7107 -0.5250 34 1 6.1527 -3.5089 -4.9652 35 1 5.1886 -4.9408 -4.5310 36 1 6.5529 -5.4411 -6.8007 37 1 4.5648 -5.8096 -8.7723 38 1 5.5276 -4.3772 -9.2078 39 1 7.5271 -7.6525 -11.9253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051368365.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:14 Heat of formation + Delta-G solvation = -82.794872 kcal Electronic energy + Delta-G solvation = -22371.239567 eV Core-core repulsion = 18700.496956 eV Total energy + Delta-G solvation = -3670.742611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.90186 -41.57706 -40.36690 -37.59567 -36.66477 -36.21314 -34.47078 -33.17673 -31.30219 -30.79369 -28.93034 -28.02956 -25.84185 -24.11597 -23.60751 -22.10646 -21.75174 -21.27903 -19.34679 -19.00069 -18.13530 -18.11967 -17.93745 -17.11470 -16.85004 -16.78225 -16.10677 -15.92797 -15.74367 -15.00660 -14.87635 -14.63970 -14.57128 -14.35275 -13.93730 -13.84191 -13.75300 -13.09340 -13.04549 -12.71774 -12.45378 -12.19363 -12.12345 -12.03202 -11.95647 -11.93860 -11.68925 -11.67100 -10.99079 -10.92759 -10.64022 -10.08004 -10.05262 -8.40393 -6.47817 0.12028 0.97967 1.06517 1.33138 1.35804 1.47581 1.50424 1.89338 1.95278 2.27920 2.46842 2.94770 3.27634 3.48117 3.63518 3.82909 3.99664 4.04160 4.16635 4.20442 4.30267 4.54038 4.62184 4.74233 4.77812 4.97170 4.99532 4.99955 5.06270 5.15956 5.21097 5.23177 5.35552 5.39140 5.39341 5.95728 6.05649 6.40892 6.51998 6.70195 6.78414 7.11116 7.26835 8.74079 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.041007 B = 0.002331 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.642725 B =12008.719553 C =12518.410023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.022 4.022 3 C -0.147 4.147 4 C 0.043 3.957 5 C -0.181 4.181 6 C -0.027 4.027 7 C 0.556 3.444 8 O -0.512 6.512 9 O -0.337 6.337 10 C 0.056 3.944 11 C 0.505 3.495 12 O -0.578 6.578 13 N -0.696 5.696 14 C 0.232 3.768 15 C -0.548 4.548 16 H 0.063 0.937 17 C 0.027 3.973 18 N -0.929 5.929 19 Si 0.937 3.063 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.260 1.260 23 N -0.256 5.256 24 N -0.356 5.356 25 H 0.460 0.540 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.179 0.821 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.414 0.586 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.840 17.606 26.740 34.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.042 4.042 3 C -0.205 4.205 4 C -0.083 4.083 5 C -0.208 4.208 6 C -0.183 4.183 7 C 0.399 3.601 8 O -0.399 6.399 9 O -0.252 6.252 10 C -0.021 4.021 11 C 0.291 3.709 12 O -0.458 6.458 13 N -0.347 5.347 14 C 0.109 3.891 15 C -0.586 4.586 16 H 0.081 0.919 17 C -0.174 4.174 18 N -0.568 5.568 19 Si 0.760 3.240 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.185 1.185 23 N -0.094 5.094 24 N -0.074 5.074 25 H 0.308 0.692 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.132 0.868 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.197 0.803 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.250 0.750 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.621 17.693 25.298 34.158 hybrid contribution 0.312 -0.285 -0.347 0.547 sum -14.309 17.408 24.951 33.620 Atomic orbital electron populations 1.21946 0.92853 1.02708 1.03852 1.19955 0.96903 0.95903 0.91454 1.21893 1.01550 0.93841 1.03179 1.21927 0.94970 1.01759 0.89619 1.21724 1.01066 1.02739 0.95262 1.20722 0.96953 1.06089 0.94577 1.19898 0.83214 0.77502 0.79497 1.90840 1.33625 1.52963 1.62423 1.86678 1.49835 1.62239 1.26421 1.22842 0.91413 0.97028 0.90767 1.20547 0.82772 0.78842 0.88766 1.90692 1.30720 1.52249 1.72163 1.45832 1.28058 1.49201 1.11625 1.19179 0.96174 0.95267 0.78511 1.21268 1.10065 1.30631 0.96606 0.91910 1.25589 0.98069 0.94365 0.99368 1.69977 1.34686 1.35837 1.16293 0.85866 0.80176 0.78883 0.79031 1.18961 1.19774 1.18473 1.73807 1.05772 1.08546 1.21309 1.43508 1.22115 1.35608 1.06195 0.69155 0.92407 0.92013 0.89570 0.86844 0.92741 0.89739 0.92566 0.80322 0.85373 0.85395 0.74963 0.96551 0.96644 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.47 8.94 71.98 0.64 0.17 16 2 C -0.02 -0.12 3.32 -11.54 -0.04 -0.16 16 3 C -0.15 -0.70 9.18 71.98 0.66 -0.04 16 4 C 0.04 0.57 5.92 41.40 0.25 0.81 16 5 C -0.18 -3.39 10.73 22.42 0.24 -3.15 16 6 C -0.03 -0.71 7.17 42.43 0.30 -0.40 16 7 C 0.56 16.92 7.97 70.29 0.56 17.48 16 8 O -0.51 -15.91 16.72 19.86 0.33 -15.58 16 9 O -0.34 -11.49 9.77 -49.99 -0.49 -11.97 16 10 C 0.06 1.67 5.95 71.23 0.42 2.10 16 11 C 0.50 19.83 7.91 87.66 0.69 20.52 16 12 O -0.58 -28.05 16.50 15.74 0.26 -27.79 16 13 N -0.70 -27.98 5.55 -466.79 -2.59 -30.57 16 14 C 0.23 11.45 4.50 85.64 0.38 11.83 16 15 C -0.55 -30.24 9.83 25.60 0.25 -29.98 16 16 H 0.06 3.61 7.84 -2.91 -0.02 3.59 16 17 C 0.03 1.51 5.47 84.65 0.46 1.97 16 18 N -0.93 -55.55 13.96 21.45 0.30 -55.25 16 19 Si 0.94 44.26 27.47 68.60 1.88 46.15 16 20 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.26 -12.24 6.54 99.48 0.65 -11.58 16 23 N -0.26 -6.49 12.24 -48.21 -0.59 -7.08 16 24 N -0.36 -5.48 6.64 -47.93 -0.32 -5.80 16 25 H 0.46 3.80 8.13 -219.99 -1.79 2.02 16 26 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.06 0.10 7.43 -2.39 -0.02 0.08 16 28 H 0.09 0.05 8.14 -2.38 -0.02 0.03 16 29 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.08 0.14 8.14 -2.39 -0.02 0.13 16 32 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 34 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.41 14.13 8.32 -92.71 -0.77 13.36 16 37 H 0.02 0.86 7.20 -2.38 -0.02 0.84 16 38 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 39 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -77.99 344.45 2.10 -75.89 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -1.52 Total: 10.85 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: 4.83 Total: 21.16 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -3.20 Total: -98.70 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: 0.10 Total: -55.34 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.15 kcal Total: -77.99 2.10 -75.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051368365.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.907 kcal (2) G-P(sol) polarization free energy of solvation -77.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds