Wall clock time and date at job start Fri Apr 10 2020 14:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47180 * 2 1 4 4 O 1.34240 * 126.83304 * 270.02879 * 3 2 1 5 5 N 1.20888 * 111.66220 * 179.97438 * 4 3 2 6 6 C 1.30140 * 111.77942 * 0.02562 * 5 4 3 7 7 C 1.50703 * 126.81317 * 179.97438 * 6 5 4 8 8 C 1.35991 * 126.83302 * 90.02446 * 3 2 1 9 9 N 1.40416 * 128.07416 * 359.97438 * 8 3 2 10 10 C 1.34772 * 120.00291 * 213.72398 * 9 8 3 11 11 O 1.21407 * 119.99873 * 3.15214 * 10 9 8 12 12 C 1.49321 * 120.00311 * 183.15723 * 10 9 8 13 13 O 1.21368 * 119.99692 * 357.95294 * 12 10 9 14 14 N 1.34769 * 120.00373 * 177.95982 * 12 10 9 15 15 C 1.46506 * 120.00026 * 3.55104 * 14 12 10 16 16 C 1.46506 * 120.00173 * 183.55672 * 14 12 10 17 17 C 1.50701 * 109.47064 * 89.99730 * 16 14 12 18 18 H 1.08007 * 119.99985 * 0.02562 * 17 16 14 19 19 C 1.37875 * 119.99723 * 179.97438 * 17 16 14 20 20 N 1.31511 * 120.00440 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99591 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46974 * 60.00276 * 21 19 17 23 23 H 1.48504 * 109.46898 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46986 * 299.99873 * 21 19 17 25 25 H 1.08998 * 109.46960 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47018 * 300.00019 * 1 2 3 27 27 H 1.08997 * 109.47304 * 60.00036 * 1 2 3 28 28 H 1.09011 * 109.46947 * 240.00039 * 2 1 3 29 29 H 1.08999 * 109.47317 * 120.00510 * 2 1 3 30 30 H 1.09005 * 109.47205 * 87.99007 * 7 6 5 31 31 H 1.09000 * 109.46865 * 207.98502 * 7 6 5 32 32 H 1.08997 * 109.47318 * 327.98610 * 7 6 5 33 33 H 0.96999 * 119.99436 * 33.72337 * 9 8 3 34 34 H 1.09004 * 109.46730 * 83.62503 * 15 14 12 35 35 H 1.08997 * 109.47262 * 203.61754 * 15 14 12 36 36 H 1.08992 * 109.47105 * 323.63041 * 15 14 12 37 37 H 1.08999 * 109.47173 * 209.99718 * 16 14 12 38 38 H 1.08994 * 109.47183 * 329.99532 * 16 14 12 39 39 H 0.96996 * 119.99830 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.3001 2.1797 -1.0744 5 7 2.6887 3.2798 -0.7581 6 6 2.7394 3.4207 0.5347 7 6 3.1739 4.6485 1.2928 8 6 2.3045 2.1892 1.0885 9 7 2.1828 1.8445 2.4442 10 6 1.8262 2.7788 3.3477 11 8 1.5548 3.9042 2.9822 12 6 1.7652 2.4297 4.7983 13 8 2.0005 1.2953 5.1598 14 7 1.4487 3.3743 5.7060 15 6 1.0887 4.7238 5.2637 16 6 1.4648 3.0517 7.1350 17 6 2.8353 3.3289 7.6971 18 1 3.6161 3.7080 7.0543 19 6 3.0920 3.0997 9.0322 20 7 2.1411 2.6386 9.8150 21 14 4.7906 3.4441 9.7292 22 1 5.1209 4.8796 9.5417 23 1 4.8070 3.1169 11.1777 24 1 5.7944 2.6087 9.0222 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.3164 5.3040 1.4451 31 1 3.5816 4.3532 2.2596 32 1 3.9380 5.1764 0.7223 33 1 2.3552 0.9339 2.7303 34 1 0.0330 4.7480 4.9935 35 1 1.2732 5.4322 6.0714 36 1 1.6918 4.9952 4.3974 37 1 0.7282 3.6648 7.6542 38 1 1.2221 1.9980 7.2723 39 1 2.3217 2.4777 10.7544 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338830803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:13:41 Heat of formation + Delta-G solvation = 2.304642 kcal Electronic energy + Delta-G solvation = -24128.080000 eV Core-core repulsion = 20461.027581 eV Total energy + Delta-G solvation = -3667.052419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.05154 -40.56443 -38.21689 -36.30144 -35.04554 -34.64211 -33.28674 -32.62921 -29.95432 -28.61861 -28.13754 -26.39984 -24.97034 -24.15329 -23.10948 -21.41508 -20.71298 -19.39533 -17.95800 -17.73650 -17.24439 -16.70359 -16.30228 -15.69851 -15.57960 -15.18123 -14.82060 -14.43268 -14.09344 -13.87950 -13.40785 -13.14751 -13.11892 -12.82276 -12.66629 -12.45064 -12.20792 -12.07515 -11.95901 -11.68854 -11.40200 -11.34580 -11.07463 -10.78881 -10.75132 -10.56833 -10.26546 -9.76301 -9.73973 -8.92055 -8.63420 -8.53307 -7.86883 -6.15034 -4.21115 1.12658 1.67997 2.17976 2.40615 3.03584 3.26923 3.31281 3.33943 3.61774 3.88092 4.20359 4.21336 4.36085 4.60328 4.71509 4.87433 4.88329 4.97928 5.19876 5.40700 5.43803 5.51759 5.62460 5.67673 5.76440 5.88576 5.90150 6.03542 6.15746 6.16465 6.51588 6.72692 7.01480 7.20945 7.29662 7.74366 7.82988 8.06846 8.11031 8.14159 8.52592 8.83123 9.44288 10.93121 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023377 B = 0.003773 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.474485 B = 7418.715415 C = 7786.054461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.038 4.038 3 C -0.055 4.055 4 O 0.105 5.895 5 N -0.360 5.360 6 C 0.038 3.962 7 C -0.062 4.062 8 C 0.040 3.960 9 N -0.619 5.619 10 C 0.508 3.492 11 O -0.495 6.495 12 C 0.498 3.502 13 O -0.525 6.525 14 N -0.558 5.558 15 C 0.064 3.936 16 C 0.241 3.759 17 C -0.534 4.534 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.892 5.892 21 Si 0.901 3.099 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.425 0.575 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.049 0.951 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 -2.327 -18.299 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.076 4.076 3 C -0.122 4.122 4 O 0.042 5.958 5 N -0.067 5.067 6 C -0.123 4.123 7 C -0.119 4.119 8 C -0.059 4.059 9 N -0.270 5.270 10 C 0.292 3.708 11 O -0.369 6.369 12 C 0.278 3.722 13 O -0.403 6.403 14 N -0.289 5.289 15 C -0.079 4.079 16 C 0.123 3.877 17 C -0.572 4.572 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.728 3.272 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.264 0.736 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.993 -1.326 -19.100 19.249 hybrid contribution 0.903 -0.501 1.412 1.750 sum -1.090 -1.827 -17.687 17.815 Atomic orbital electron populations 1.21786 0.93342 1.02770 1.02929 1.20078 0.96807 0.86073 1.04673 1.23963 1.05154 0.97636 0.85414 1.84832 1.62153 1.17349 1.31470 1.73797 1.17855 0.99545 1.15486 1.23445 1.01351 0.97811 0.89666 1.20233 1.01807 0.91858 0.97988 1.18082 1.07072 0.95191 0.85520 1.42461 1.67410 1.14719 1.02402 1.21061 0.76894 0.84647 0.88162 1.90673 1.45655 1.19924 1.80666 1.19372 0.81316 0.86387 0.85119 1.90746 1.49393 1.19896 1.80245 1.48122 1.61687 1.10326 1.08804 1.22294 1.00390 0.83350 1.01823 1.19545 0.97867 0.98470 0.71821 1.21335 0.96562 1.44903 0.94423 0.92288 1.24921 0.97455 0.94752 0.96722 1.69913 1.32674 1.44426 1.06042 0.86515 0.84006 0.78793 0.77888 1.20108 1.21054 1.20106 0.91116 0.92073 0.92016 0.89077 0.88749 0.88853 0.90551 0.91512 0.73583 0.93326 0.91033 0.88613 0.94101 0.93276 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.90 37.16 0.37 -0.72 16 2 C -0.04 -0.28 6.50 -27.88 -0.18 -0.46 16 3 C -0.05 -0.61 6.77 -35.12 -0.24 -0.85 16 4 O 0.10 1.31 11.20 16.65 0.19 1.50 16 5 N -0.36 -5.12 12.06 33.57 0.40 -4.71 16 6 C 0.04 0.54 7.00 -81.92 -0.57 -0.04 16 7 C -0.06 -0.81 8.45 36.01 0.30 -0.51 16 8 C 0.04 0.53 6.74 -83.35 -0.56 -0.03 16 9 N -0.62 -8.46 5.45 -10.09 -0.05 -8.51 16 10 C 0.51 8.30 7.17 -11.65 -0.08 8.21 16 11 O -0.50 -8.09 8.84 5.45 0.05 -8.04 16 12 C 0.50 9.95 7.73 -11.65 -0.09 9.86 16 13 O -0.52 -11.78 16.04 5.48 0.09 -11.69 16 14 N -0.56 -11.71 2.86 -183.51 -0.52 -12.24 16 15 C 0.06 1.10 9.60 59.85 0.57 1.68 16 16 C 0.24 6.08 5.16 -5.19 -0.03 6.05 16 17 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 18 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 21 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.50 8.14 -51.92 -0.42 0.07 16 29 H 0.09 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.09 1.25 7.28 -51.93 -0.38 0.87 16 31 H 0.08 1.06 6.85 -51.93 -0.36 0.71 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.43 5.17 8.25 -40.82 -0.34 4.83 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 36 H 0.10 1.56 5.27 -52.02 -0.27 1.29 16 37 H 0.04 1.04 8.07 -51.93 -0.42 0.62 16 38 H 0.05 1.36 7.37 -51.93 -0.38 0.98 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -31.31 334.61 -5.09 -36.40 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.06 Total: 1.00 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -0.93 Total: 9.96 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.56 Total: -50.34 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.32 Total: -18.24 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.31 -5.09 -36.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338830803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.702 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds