Wall clock time and date at job start Fri Apr 10 2020 14:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47005 * 2 1 4 4 O 1.34239 * 126.83284 * 270.15784 * 3 2 1 5 5 N 1.20884 * 111.66317 * 180.25500 * 4 3 2 6 6 C 1.30147 * 111.77722 * 359.75805 * 5 4 3 7 7 C 1.50706 * 126.81650 * 180.02562 * 6 5 4 8 8 C 1.35993 * 126.82878 * 89.99966 * 3 2 1 9 9 N 1.40409 * 128.07656 * 0.04502 * 8 3 2 10 10 C 1.34774 * 120.00148 * 141.12668 * 9 8 3 11 11 O 1.21396 * 120.00108 * 3.68030 * 10 9 8 12 12 C 1.49322 * 119.99817 * 183.68436 * 10 9 8 13 13 O 1.21364 * 120.00322 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00159 * 179.97438 * 12 10 9 15 15 C 1.46500 * 120.00278 * 180.02562 * 14 12 10 16 16 H 1.09002 * 109.46817 * 324.99366 * 15 14 12 17 17 C 1.52994 * 109.47409 * 84.99966 * 15 14 12 18 18 C 1.50706 * 109.46964 * 205.00039 * 15 14 12 19 19 H 1.07994 * 119.99754 * 354.75879 * 18 15 14 20 20 C 1.37872 * 119.99891 * 174.76218 * 18 15 14 21 21 N 1.31512 * 119.99884 * 163.13450 * 20 18 15 22 22 Si 1.86801 * 119.99951 * 343.41031 * 20 18 15 23 23 H 1.48496 * 109.46979 * 269.72202 * 22 20 18 24 24 H 1.48493 * 109.47469 * 29.72664 * 22 20 18 25 25 H 1.48501 * 109.47017 * 149.72618 * 22 20 18 26 26 H 1.09008 * 109.47027 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46977 * 299.99287 * 1 2 3 28 28 H 1.08998 * 109.47376 * 60.00165 * 1 2 3 29 29 H 1.09001 * 109.46977 * 240.00712 * 2 1 3 30 30 H 1.08997 * 109.47416 * 120.00389 * 2 1 3 31 31 H 1.09001 * 109.46648 * 277.61496 * 7 6 5 32 32 H 1.08996 * 109.47077 * 37.61109 * 7 6 5 33 33 H 1.08994 * 109.47148 * 157.61617 * 7 6 5 34 34 H 0.97005 * 119.99690 * 321.11927 * 9 8 3 35 35 H 0.97002 * 119.99319 * 359.97438 * 14 12 10 36 36 H 1.08992 * 109.47544 * 54.40708 * 17 15 14 37 37 H 1.08998 * 109.47273 * 174.41596 * 17 15 14 38 38 H 1.09011 * 109.46876 * 294.40747 * 17 15 14 39 39 H 0.97001 * 120.00091 * 355.19556 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2978 2.1806 -1.0744 5 7 2.6922 3.2786 -0.7581 6 6 2.7444 3.4190 0.5347 7 6 3.1847 4.6447 1.2930 8 6 2.3040 2.1894 1.0885 9 7 2.1830 1.8444 2.4442 10 6 3.1077 2.2624 3.3311 11 8 4.0082 2.9923 2.9706 12 6 3.0244 1.8277 4.7572 13 8 2.1239 1.0983 5.1178 14 7 3.9494 2.2452 5.6441 15 6 3.8681 1.8182 7.0432 16 1 2.8218 1.7406 7.3391 17 6 4.5452 0.4554 7.2007 18 6 4.5638 2.8290 7.9181 19 1 5.0933 3.6570 7.4705 20 6 4.5244 2.6966 9.2899 21 7 5.3805 3.3564 10.0390 22 14 3.2599 1.5740 10.0838 23 1 2.0267 2.3473 10.3777 24 1 2.9364 0.4594 9.1575 25 1 3.8115 1.0229 11.3477 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 4.2727 4.6612 1.3566 32 1 2.8377 5.5377 0.7731 33 1 2.7623 4.6218 2.2975 34 1 1.4337 1.3053 2.7424 35 1 4.6694 2.8278 5.3559 36 1 5.5622 0.5078 6.8123 37 1 4.5728 0.1832 8.2558 38 1 3.9828 -0.2960 6.6463 39 1 6.0835 3.8810 9.6250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438876149.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:13:51 Heat of formation + Delta-G solvation = -16.173505 kcal Electronic energy + Delta-G solvation = -23822.738310 eV Core-core repulsion = 20154.884618 eV Total energy + Delta-G solvation = -3667.853691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.12733 -40.58376 -38.48736 -36.25476 -35.26930 -34.75587 -33.41418 -32.54092 -30.11347 -29.88514 -28.68631 -25.64638 -24.87266 -24.18389 -22.55298 -21.02129 -20.48301 -19.75914 -18.69426 -17.94862 -17.81314 -17.26487 -16.45093 -15.88265 -15.77082 -15.18801 -14.94461 -14.20772 -14.08369 -13.75695 -13.38164 -13.30820 -13.25366 -12.87412 -12.81655 -12.62781 -12.32245 -12.11869 -11.84588 -11.80001 -11.53765 -11.48111 -11.36434 -10.80449 -10.64787 -10.26525 -9.81008 -9.78950 -9.39029 -9.18231 -8.78715 -8.52774 -8.44084 -6.66960 -4.32404 1.04376 1.55030 2.04771 2.28602 2.94879 3.33541 3.37707 3.43200 3.51258 3.81256 4.13914 4.15733 4.35626 4.58771 4.72940 4.78403 4.86542 4.91425 5.07799 5.33457 5.35593 5.44299 5.54842 5.60969 5.70895 5.78961 6.08222 6.13494 6.22342 6.35769 6.49035 6.73144 6.78633 7.03156 7.14816 7.43009 7.66084 8.07136 8.10898 8.19035 8.38836 8.69616 9.36657 10.72961 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.026357 B = 0.003592 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.066124 B = 7793.292419 C = 8529.137413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.041 4.041 3 C -0.048 4.048 4 O 0.105 5.895 5 N -0.360 5.360 6 C 0.039 3.961 7 C -0.062 4.062 8 C 0.035 3.965 9 N -0.619 5.619 10 C 0.507 3.493 11 O -0.496 6.496 12 C 0.499 3.501 13 O -0.536 6.536 14 N -0.660 5.660 15 C 0.240 3.760 16 H 0.049 0.951 17 C -0.156 4.156 18 C -0.623 4.623 19 H 0.065 0.935 20 C 0.043 3.957 21 N -0.893 5.893 22 Si 1.038 2.962 23 H -0.282 1.282 24 H -0.268 1.268 25 H -0.282 1.282 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.426 0.574 35 H 0.407 0.593 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.366 -5.951 -18.848 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.115 4.115 4 O 0.043 5.957 5 N -0.067 5.067 6 C -0.121 4.121 7 C -0.119 4.119 8 C -0.064 4.064 9 N -0.271 5.271 10 C 0.290 3.710 11 O -0.369 6.369 12 C 0.277 3.723 13 O -0.415 6.415 14 N -0.309 5.309 15 C 0.137 3.863 16 H 0.066 0.934 17 C -0.214 4.214 18 C -0.661 4.661 19 H 0.083 0.917 20 C -0.164 4.164 21 N -0.525 5.525 22 Si 0.864 3.136 23 H -0.209 1.209 24 H -0.193 1.193 25 H -0.208 1.208 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.265 0.735 35 H 0.242 0.758 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.579 -5.637 -18.313 20.994 hybrid contribution 0.579 0.337 -0.743 1.001 sum -8.000 -5.300 -19.056 21.336 Atomic orbital electron populations 1.21814 0.93317 1.02963 1.02857 1.20125 0.96700 0.86107 1.05023 1.24050 1.05549 0.96373 0.85519 1.84847 1.61627 1.17778 1.31453 1.73807 1.17582 0.99777 1.15494 1.23501 1.01757 0.97173 0.89698 1.20203 1.02927 0.90547 0.98237 1.18048 1.09347 0.93568 0.85423 1.42351 1.27789 1.53996 1.02966 1.20904 0.81813 0.80618 0.87656 1.90794 1.33093 1.33273 1.79697 1.19610 0.84318 0.82947 0.85431 1.90729 1.34486 1.37019 1.79227 1.46260 1.26903 1.47242 1.10461 1.19306 0.97885 0.93274 0.75812 0.93366 1.22447 1.00034 0.97665 1.01276 1.22057 1.38705 1.12372 0.92928 0.91677 1.25689 0.98821 0.98285 0.93639 1.70816 1.14109 1.28944 1.38650 0.84181 0.76169 0.76874 0.76338 1.20882 1.19275 1.20787 0.90985 0.92147 0.91896 0.88891 0.88586 0.89226 0.91352 0.90352 0.73542 0.75789 0.93420 0.92000 0.94958 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.50 16 2 C -0.04 -0.28 6.50 -27.88 -0.18 -0.46 16 3 C -0.05 -0.51 6.77 -35.11 -0.24 -0.75 16 4 O 0.11 1.28 11.20 16.66 0.19 1.47 16 5 N -0.36 -5.01 12.06 33.57 0.40 -4.60 16 6 C 0.04 0.55 6.99 -81.92 -0.57 -0.02 16 7 C -0.06 -0.81 8.52 36.01 0.31 -0.50 16 8 C 0.03 0.44 6.70 -83.35 -0.56 -0.12 16 9 N -0.62 -7.86 5.45 -10.09 -0.05 -7.91 16 10 C 0.51 7.86 7.34 -11.65 -0.09 7.77 16 11 O -0.50 -8.29 12.43 5.46 0.07 -8.22 16 12 C 0.50 9.00 7.85 -11.64 -0.09 8.91 16 13 O -0.54 -10.45 16.14 5.48 0.09 -10.36 16 14 N -0.66 -13.09 5.06 -55.40 -0.28 -13.37 16 15 C 0.24 5.48 2.11 -69.08 -0.15 5.34 16 16 H 0.05 1.16 6.17 -51.93 -0.32 0.84 16 17 C -0.16 -3.31 8.80 37.15 0.33 -2.99 16 18 C -0.62 -16.32 9.01 -34.44 -0.31 -16.63 16 19 H 0.07 1.81 7.96 -52.49 -0.42 1.39 16 20 C 0.04 1.17 5.31 -17.82 -0.09 1.07 16 21 N -0.89 -25.94 13.70 55.43 0.76 -25.18 16 22 Si 1.04 23.82 26.19 -169.99 -4.45 19.36 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.27 -5.70 5.60 56.52 0.32 -5.39 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.22 7.63 -51.93 -0.40 0.82 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.07 6.66 -51.93 -0.35 0.72 16 34 H 0.43 4.61 8.30 -40.82 -0.34 4.27 16 35 H 0.41 7.72 8.00 -40.82 -0.33 7.39 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.33 5.15 -51.93 -0.27 1.06 16 38 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.27 7.83 8.73 -40.82 -0.36 7.48 16 LS Contribution 331.56 15.07 5.00 5.00 Total: -1.00 -30.35 331.56 -4.59 -34.95 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.03 Total: 7.76 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.28 Total: 1.13 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: 0.83 Total: -51.07 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.34 Total: -17.12 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -4.45 Total: 19.36 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.35 -4.59 -34.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438876149.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.772 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds