Wall clock time and date at job start Fri Apr 10 2020 14:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.46855 * 2 1 4 4 C 1.39645 * 126.06525 * 125.28577 * 3 2 1 5 5 C 1.38514 * 105.35167 * 180.14367 * 4 3 2 6 6 C 1.47027 * 126.89649 * 179.86058 * 5 4 3 7 7 O 1.21668 * 119.99792 * 123.98009 * 6 5 4 8 8 N 1.34769 * 119.99888 * 303.98037 * 6 5 4 9 9 C 1.36841 * 119.99964 * 175.22828 * 8 6 5 10 10 H 1.07999 * 120.00014 * 221.30492 * 9 8 6 11 11 C 1.39047 * 120.00222 * 41.29757 * 9 8 6 12 12 N 1.31368 * 119.99965 * 21.45006 * 11 9 8 13 13 Si 1.86800 * 120.00167 * 201.44493 * 11 9 8 14 14 H 1.48495 * 109.47190 * 5.00812 * 13 11 9 15 15 H 1.48497 * 109.46935 * 125.00912 * 13 11 9 16 16 H 1.48501 * 109.46968 * 245.00537 * 13 11 9 17 17 C 1.46502 * 120.00170 * 355.22506 * 8 6 5 18 18 C 1.50697 * 109.47128 * 278.23996 * 17 8 6 19 19 O 1.20818 * 120.00199 * 6.75371 * 18 17 8 20 20 O 1.34232 * 119.99813 * 186.75995 * 18 17 8 21 21 C 1.45198 * 116.99991 * 180.02562 * 20 18 17 22 22 N 1.36650 * 106.20882 * 359.59564 * 5 4 3 23 23 C 1.46500 * 125.19568 * 180.23410 * 22 5 4 24 24 N 1.28443 * 109.60799 * 0.26885 * 22 5 4 25 25 H 1.08999 * 109.47336 * 299.99934 * 1 2 3 26 26 H 1.09002 * 109.47451 * 60.00525 * 1 2 3 27 27 H 1.09003 * 109.46913 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47336 * 240.00066 * 2 1 3 29 29 H 1.09002 * 109.47451 * 119.99475 * 2 1 3 30 30 H 1.08001 * 127.32321 * 0.02562 * 4 3 2 31 31 H 0.96995 * 120.00712 * 184.93001 * 12 11 9 32 32 H 1.09004 * 109.47220 * 38.23942 * 17 8 6 33 33 H 1.09000 * 109.47181 * 158.23647 * 17 8 6 34 34 H 1.08994 * 109.47568 * 59.99608 * 21 20 18 35 35 H 1.09001 * 109.46971 * 179.97438 * 21 20 18 36 36 H 1.08997 * 109.47075 * 299.99400 * 21 20 18 37 37 H 1.09007 * 109.46678 * 114.39408 * 23 22 5 38 38 H 1.08996 * 109.47268 * 234.39457 * 23 22 5 39 39 H 1.08997 * 109.47196 * 354.40215 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.9210 1.9786 0.9214 5 6 3.0834 3.2954 0.5235 6 6 3.9229 4.3154 1.1688 7 8 4.7778 4.8953 0.5260 8 7 3.7454 4.6081 2.4723 9 6 4.5892 5.4852 3.0977 10 1 4.9365 5.2794 4.0994 11 6 4.9998 6.6414 2.4434 12 7 4.2928 7.1164 1.4433 13 14 6.5565 7.5194 2.9866 14 1 7.2300 6.7239 4.0443 15 1 7.4694 7.6723 1.8254 16 1 6.2077 8.8599 3.5219 17 6 2.6490 3.9872 3.2198 18 6 1.3706 4.7396 2.9542 19 8 1.3477 5.6180 2.1249 20 8 0.2573 4.4339 3.6390 21 6 -0.9374 5.1993 3.3305 22 7 2.3115 3.4545 -0.5928 23 6 2.1810 4.6961 -1.3593 24 7 1.7172 2.3493 -0.8670 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.3820 1.4882 1.7660 31 1 4.6156 7.8808 0.9409 32 1 2.5335 2.9510 2.9018 33 1 2.8735 4.0171 4.2860 34 1 -1.1937 5.0651 2.2797 35 1 -1.7622 4.8519 3.9527 36 1 -0.7531 6.2554 3.5275 37 1 2.6052 4.5555 -2.3536 38 1 1.1271 4.9595 -1.4478 39 1 2.7140 5.4971 -0.8470 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602102942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:13:20 Heat of formation + Delta-G solvation = -44.467353 kcal Electronic energy + Delta-G solvation = -25319.147807 eV Core-core repulsion = 21650.067202 eV Total energy + Delta-G solvation = -3669.080605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.40937 -41.37489 -39.87894 -37.38266 -36.17026 -35.54760 -34.11644 -32.63653 -31.54271 -30.02551 -27.87596 -27.79979 -26.70839 -24.22724 -23.80841 -22.30894 -21.84576 -20.13092 -18.91054 -18.48447 -18.24118 -17.47532 -17.12325 -17.03486 -16.74681 -16.58967 -15.83021 -15.44531 -15.01330 -14.86382 -14.68190 -14.39180 -14.24812 -14.02829 -13.71610 -13.50917 -13.41964 -12.98344 -12.93280 -12.88597 -12.74648 -12.72282 -12.27147 -12.09780 -12.06321 -11.71397 -11.47023 -11.37517 -10.93610 -10.48442 -9.83541 -9.75264 -9.35047 -8.19505 -6.06009 0.71931 1.33876 1.38392 1.45830 1.47027 1.56674 1.72521 1.78851 2.34464 2.54422 2.96179 3.25434 3.56880 3.78163 4.07445 4.13757 4.17754 4.24177 4.25597 4.31482 4.33558 4.45061 4.48893 4.55060 4.56853 4.66327 4.71621 4.87037 4.97476 5.16646 5.32513 5.44290 5.46553 5.47582 5.67622 5.92274 6.08730 6.84215 6.92578 7.02272 7.22371 7.47850 8.09810 8.83892 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.006573 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.225608 B = 4259.004087 C = 5090.902277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.031 4.031 3 C 0.030 3.970 4 C -0.218 4.218 5 C -0.016 4.016 6 C 0.539 3.461 7 O -0.564 6.564 8 N -0.427 5.427 9 C -0.373 4.373 10 H 0.105 0.895 11 C 0.023 3.977 12 N -0.839 5.839 13 Si 0.969 3.031 14 H -0.249 1.249 15 H -0.296 1.296 16 H -0.280 1.280 17 C 0.105 3.895 18 C 0.432 3.568 19 O -0.515 6.515 20 O -0.364 6.364 21 C 0.033 3.967 22 N -0.278 5.278 23 C 0.100 3.900 24 N -0.313 5.313 25 H 0.047 0.953 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.183 0.817 31 H 0.256 0.744 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.047 0.953 35 H 0.139 0.861 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.355 -11.809 2.987 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.128 4.128 4 C -0.246 4.246 5 C -0.147 4.147 6 C 0.327 3.673 7 O -0.444 6.444 8 N -0.147 5.147 9 C -0.500 4.500 10 H 0.122 0.878 11 C -0.186 4.186 12 N -0.472 5.472 13 Si 0.794 3.206 14 H -0.172 1.172 15 H -0.223 1.223 16 H -0.206 1.206 17 C -0.021 4.021 18 C 0.273 3.727 19 O -0.402 6.402 20 O -0.281 6.281 21 C -0.060 4.060 22 N -0.063 5.063 23 C -0.040 4.040 24 N -0.145 5.145 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.200 0.800 31 H 0.065 0.935 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.066 0.934 35 H 0.157 0.843 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.674 -10.673 1.267 14.461 hybrid contribution 1.034 1.433 0.271 1.787 sum -8.640 -9.241 1.538 12.744 Atomic orbital electron populations 1.21664 0.94229 1.02631 1.01251 1.20025 0.96373 0.86106 1.04479 1.22585 0.99146 0.97734 0.93356 1.22321 1.05514 0.91657 1.05091 1.22163 1.00992 0.98095 0.93400 1.17124 0.84201 0.82734 0.83286 1.90629 1.37667 1.52587 1.63484 1.42877 1.23823 1.39653 1.08379 1.19575 1.26661 1.00523 1.03259 0.87779 1.26142 1.00039 0.95920 0.96504 1.70143 1.35323 1.21571 1.20118 0.85287 0.79214 0.78146 0.77976 1.17176 1.22286 1.20570 1.21718 0.81539 0.97353 1.01441 1.25265 0.86477 0.82511 0.78474 1.90731 1.84971 1.30915 1.33540 1.86494 1.19537 1.60401 1.61626 1.23387 0.84734 0.95798 1.02106 1.45612 1.31245 1.09640 1.19852 1.22017 1.04210 0.81438 0.96368 1.72926 1.21464 0.93050 1.27018 0.93429 0.94009 0.89808 0.89812 0.87543 0.79988 0.93514 0.85091 0.84446 0.93415 0.84259 0.93246 0.88493 0.88774 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.87 71.98 0.71 -2.03 16 2 C -0.03 -0.66 6.51 29.85 0.19 -0.47 16 3 C 0.03 0.95 6.49 43.04 0.28 1.23 16 4 C -0.22 -7.57 9.00 22.68 0.20 -7.37 16 5 C -0.02 -0.72 5.78 40.76 0.24 -0.49 16 6 C 0.54 28.19 5.77 86.55 0.50 28.69 16 7 O -0.56 -34.40 13.97 -4.25 -0.06 -34.46 16 8 N -0.43 -21.02 2.16 -643.79 -1.39 -22.41 16 9 C -0.37 -19.82 9.22 84.11 0.78 -19.04 16 10 H 0.10 5.02 7.92 -2.91 -0.02 5.00 16 11 C 0.02 1.31 4.28 84.96 0.36 1.67 16 12 N -0.84 -50.88 11.53 21.68 0.25 -50.63 16 13 Si 0.97 44.49 29.61 68.60 2.03 46.52 16 14 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 15 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 C 0.10 3.98 5.77 85.63 0.49 4.48 16 18 C 0.43 17.74 7.85 71.23 0.56 18.30 16 19 O -0.52 -25.97 15.86 21.99 0.35 -25.62 16 20 O -0.36 -12.05 10.57 -51.43 -0.54 -12.60 16 21 C 0.03 0.89 10.56 113.37 1.20 2.09 16 22 N -0.28 -11.69 3.75 -356.03 -1.34 -13.03 16 23 C 0.10 3.99 11.37 127.77 1.45 5.44 16 24 N -0.31 -11.74 11.87 -47.50 -0.56 -12.31 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.11 1.70 8.12 -2.39 -0.02 1.68 16 30 H 0.18 5.07 7.65 -2.91 -0.02 5.05 16 31 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.13 4.22 5.15 -2.38 -0.01 4.21 16 33 H 0.14 4.39 7.98 -2.39 -0.02 4.37 16 34 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 35 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 37 H 0.10 3.34 8.14 -2.38 -0.02 3.32 16 38 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.07 3.57 6.96 -2.39 -0.02 3.55 16 Total: -1.00 -79.19 338.45 6.77 -72.43 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 1.06 Total: 19.60 kcal Atomic # 6 Polarization: 25.55 SS G_CDS: 6.96 Total: 32.51 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -3.04 Total: -98.37 kcal Atomic # 8 Polarization: -72.43 SS G_CDS: -0.25 Total: -72.68 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -79.19 6.77 -72.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602102942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.958 kcal (2) G-P(sol) polarization free energy of solvation -79.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds