Wall clock time and date at job start Fri Apr 10 2020 14:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47383 * 2 1 4 4 C 1.50694 * 109.47329 * 180.02562 * 3 2 1 5 5 C 1.35352 * 126.37745 * 275.34417 * 4 3 2 6 6 C 1.41548 * 105.50123 * 180.10348 * 5 4 3 7 7 C 1.47583 * 126.52232 * 179.83965 * 6 5 4 8 8 O 1.21485 * 120.00085 * 359.71475 * 7 6 5 9 9 O 1.34729 * 119.99683 * 179.71451 * 7 6 5 10 10 C 1.45206 * 116.99812 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47021 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47324 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00339 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00355 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99771 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46889 * 89.99924 * 19 17 15 21 21 H 1.48494 * 109.47191 * 209.99873 * 19 17 15 22 22 H 1.48500 * 109.47362 * 330.00383 * 19 17 15 23 23 N 1.31855 * 106.95087 * 359.58013 * 6 5 4 24 24 N 1.28469 * 110.06485 * 0.26329 * 23 6 5 25 25 H 0.96998 * 124.87864 * 180.02562 * 24 23 6 26 26 H 1.09006 * 109.47208 * 299.99717 * 1 2 3 27 27 H 1.08997 * 109.47592 * 60.00114 * 1 2 3 28 28 H 1.09002 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46940 * 239.99563 * 2 1 3 30 30 H 1.09006 * 109.47106 * 120.00205 * 2 1 3 31 31 H 1.08998 * 109.47019 * 60.00002 * 3 2 1 32 32 H 1.09002 * 109.46717 * 299.99980 * 3 2 1 33 33 H 1.08003 * 127.25096 * 359.94033 * 5 4 3 34 34 H 1.09000 * 109.47070 * 300.00016 * 10 9 7 35 35 H 1.09001 * 109.46626 * 60.00033 * 10 9 7 36 36 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 37 37 H 1.09004 * 109.46923 * 300.00119 * 14 13 11 38 38 H 1.09004 * 109.47042 * 59.99705 * 14 13 11 39 39 H 0.96991 * 119.99886 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3502 1.3408 1.0840 6 6 5.6725 1.3903 0.5815 7 6 6.9162 1.3204 1.3731 8 8 6.8615 1.2141 2.5820 9 8 8.1120 1.3744 0.7549 10 6 9.2930 1.2995 1.5963 11 6 10.5282 1.3742 0.7362 12 8 10.4235 1.4797 -0.4675 13 7 11.7492 1.3228 1.3045 14 6 12.9500 1.3960 0.4684 15 6 14.1757 1.3182 1.3416 16 1 14.0707 1.2240 2.4124 17 6 15.4311 1.3682 0.7738 18 7 16.5008 1.2997 1.5358 19 14 15.6126 1.5317 -1.0782 20 1 15.6608 2.9697 -1.4457 21 1 16.8673 0.8672 -1.5132 22 1 14.4538 0.8883 -1.7479 23 7 5.5817 1.5051 -0.7289 24 7 4.3475 1.5369 -1.0841 25 1 4.0356 1.6168 -1.9991 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 4.0462 1.2450 2.1160 34 1 9.2900 2.1307 2.3015 35 1 9.2891 0.3576 2.1449 36 1 11.8330 1.2381 2.2671 37 1 12.9527 0.5651 -0.2371 38 1 12.9541 2.3381 -0.0798 39 1 17.3839 1.3345 1.1363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904156379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:20 Heat of formation + Delta-G solvation = -59.678240 kcal Electronic energy + Delta-G solvation = -22152.823775 eV Core-core repulsion = 18483.083576 eV Total energy + Delta-G solvation = -3669.740198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.08949 -40.31989 -38.75788 -36.33953 -35.88277 -34.32769 -32.43542 -32.34451 -31.42326 -29.50539 -27.33427 -26.92870 -24.73591 -22.50288 -22.08551 -21.41607 -20.49500 -20.06815 -18.19046 -17.68707 -17.29395 -16.74859 -16.50795 -15.84022 -15.67482 -15.61084 -15.04158 -14.60025 -14.37279 -14.11829 -14.04491 -13.64473 -13.14798 -13.08281 -12.77598 -12.52044 -12.33695 -12.09884 -12.03296 -11.84767 -11.36038 -11.09120 -11.04979 -10.88711 -10.80379 -10.68870 -9.97760 -9.82113 -9.51531 -9.36244 -9.28936 -8.79238 -8.22453 -6.21957 -4.24758 1.12344 1.64663 2.16505 2.64578 2.96389 3.09755 3.27530 3.34154 3.42710 3.83309 4.08634 4.18637 4.33286 4.37944 4.47153 4.75204 4.84572 4.96885 5.12900 5.13158 5.14900 5.20525 5.22510 5.23160 5.27839 5.38823 5.51202 5.64926 5.73340 5.93438 6.23972 6.56239 6.76967 7.04441 7.14020 7.34868 7.39070 7.72248 8.08641 8.44861 8.71846 8.84172 9.37396 10.89821 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.044751 B = 0.002219 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.528325 B =12613.873873 C =13070.822217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.051 4.051 4 C 0.015 3.985 5 C -0.169 4.169 6 C 0.003 3.997 7 C 0.555 3.445 8 O -0.500 6.500 9 O -0.314 6.314 10 C 0.049 3.951 11 C 0.502 3.498 12 O -0.533 6.533 13 N -0.700 5.700 14 C 0.222 3.778 15 C -0.545 4.545 16 H 0.081 0.919 17 C 0.078 3.922 18 N -0.891 5.891 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.260 1.260 23 N -0.220 5.220 24 N -0.374 5.374 25 H 0.447 0.553 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.167 0.833 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.399 0.601 37 H 0.028 0.972 38 H 0.023 0.977 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.469 -0.604 -2.062 32.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.089 4.089 4 C -0.110 4.110 5 C -0.196 4.196 6 C -0.156 4.156 7 C 0.396 3.604 8 O -0.386 6.386 9 O -0.228 6.228 10 C -0.029 4.029 11 C 0.285 3.715 12 O -0.411 6.411 13 N -0.351 5.351 14 C 0.100 3.900 15 C -0.583 4.583 16 H 0.099 0.901 17 C -0.126 4.126 18 N -0.528 5.528 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.185 1.185 23 N -0.057 5.057 24 N -0.090 5.090 25 H 0.292 0.708 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.184 0.816 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.233 0.767 37 H 0.046 0.954 38 H 0.041 0.959 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -31.580 -0.482 -3.467 31.774 hybrid contribution -0.167 0.035 -0.056 0.180 sum -31.747 -0.446 -3.523 31.945 Atomic orbital electron populations 1.21779 0.95103 1.02150 1.02045 1.21562 0.96126 0.95343 1.03031 1.20250 0.85904 0.98486 1.04307 1.21476 0.95259 1.07171 0.87108 1.21471 0.89515 1.08478 1.00154 1.20698 0.92317 1.12558 0.89994 1.19588 0.82672 0.72843 0.85252 1.90864 1.87645 1.46020 1.14076 1.86694 1.13409 1.82785 1.39899 1.22883 0.82299 1.04936 0.92774 1.19905 0.84349 0.78550 0.88684 1.90714 1.86664 1.49154 1.14529 1.46048 1.05212 1.72237 1.11580 1.19550 0.81829 0.96996 0.91583 1.21075 0.88809 1.53097 0.95347 0.90097 1.24784 0.95447 0.93849 0.98474 1.69875 0.98114 1.49158 1.35671 0.86820 0.78291 0.79131 0.85485 1.19802 1.20861 1.18452 1.73885 1.00817 1.16199 1.14813 1.43492 1.02945 1.52396 1.10181 0.70769 0.92349 0.92626 0.92350 0.91862 0.91044 0.88791 0.90383 0.81573 0.88063 0.88071 0.76708 0.95427 0.95894 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 9.91 37.15 0.37 -0.10 16 2 C -0.12 -0.47 5.92 -26.73 -0.16 -0.63 16 3 C -0.05 -0.19 5.77 -27.89 -0.16 -0.35 16 4 C 0.01 0.11 6.48 -82.21 -0.53 -0.43 16 5 C -0.17 -1.66 10.73 -39.35 -0.42 -2.08 16 6 C 0.00 0.04 7.17 -82.78 -0.59 -0.56 16 7 C 0.55 8.51 7.97 34.54 0.28 8.78 16 8 O -0.50 -7.96 16.72 -19.25 -0.32 -8.28 16 9 O -0.31 -5.38 9.77 -47.25 -0.46 -5.85 16 10 C 0.05 0.75 5.95 36.01 0.21 0.97 16 11 C 0.50 9.97 7.91 -10.99 -0.09 9.88 16 12 O -0.53 -12.86 16.50 -14.11 -0.23 -13.10 16 13 N -0.70 -14.24 5.55 -61.47 -0.34 -14.58 16 14 C 0.22 5.49 4.50 -5.20 -0.02 5.46 16 15 C -0.55 -14.96 9.83 -34.44 -0.34 -15.29 16 16 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 18 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 19 Si 0.88 21.49 27.47 -169.99 -4.67 16.83 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 23 N -0.22 -2.81 12.24 33.41 0.41 -2.40 16 24 N -0.37 -3.03 6.83 33.50 0.23 -2.80 16 25 H 0.45 1.94 8.96 -190.44 -1.71 0.24 16 26 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.05 0.14 8.14 -51.93 -0.42 -0.28 16 28 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.40 6.97 8.32 -40.82 -0.34 6.63 16 37 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 38 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -36.10 346.91 -7.56 -43.66 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.62 Total: -0.80 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -1.56 Total: 7.77 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 1.07 Total: -45.46 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -1.02 Total: -27.22 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.10 -7.56 -43.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904156379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.021 kcal (2) G-P(sol) polarization free energy of solvation -36.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds