Wall clock time and date at job start Fri Apr 10 2020 14:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47383 * 2 1 4 4 C 1.50694 * 109.47329 * 180.02562 * 3 2 1 5 5 C 1.35352 * 126.37745 * 275.34417 * 4 3 2 6 6 C 1.41548 * 105.50123 * 180.10348 * 5 4 3 7 7 C 1.47583 * 126.52232 * 179.83965 * 6 5 4 8 8 O 1.21485 * 120.00085 * 359.71475 * 7 6 5 9 9 O 1.34729 * 119.99683 * 179.71451 * 7 6 5 10 10 C 1.45206 * 116.99812 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47021 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47324 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00339 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00355 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99771 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46889 * 89.99924 * 19 17 15 21 21 H 1.48494 * 109.47191 * 209.99873 * 19 17 15 22 22 H 1.48500 * 109.47362 * 330.00383 * 19 17 15 23 23 N 1.31855 * 106.95087 * 359.58013 * 6 5 4 24 24 N 1.28469 * 110.06485 * 0.26329 * 23 6 5 25 25 H 0.96998 * 124.87864 * 180.02562 * 24 23 6 26 26 H 1.09006 * 109.47208 * 299.99717 * 1 2 3 27 27 H 1.08997 * 109.47592 * 60.00114 * 1 2 3 28 28 H 1.09002 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46940 * 239.99563 * 2 1 3 30 30 H 1.09006 * 109.47106 * 120.00205 * 2 1 3 31 31 H 1.08998 * 109.47019 * 60.00002 * 3 2 1 32 32 H 1.09002 * 109.46717 * 299.99980 * 3 2 1 33 33 H 1.08003 * 127.25096 * 359.94033 * 5 4 3 34 34 H 1.09000 * 109.47070 * 300.00016 * 10 9 7 35 35 H 1.09001 * 109.46626 * 60.00033 * 10 9 7 36 36 H 0.96996 * 119.99844 * 359.97438 * 13 11 10 37 37 H 1.09004 * 109.46923 * 300.00119 * 14 13 11 38 38 H 1.09004 * 109.47042 * 59.99705 * 14 13 11 39 39 H 0.96991 * 119.99886 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3502 1.3408 1.0840 6 6 5.6725 1.3903 0.5815 7 6 6.9162 1.3204 1.3731 8 8 6.8615 1.2141 2.5820 9 8 8.1120 1.3744 0.7549 10 6 9.2930 1.2995 1.5963 11 6 10.5282 1.3742 0.7362 12 8 10.4235 1.4797 -0.4675 13 7 11.7492 1.3228 1.3045 14 6 12.9500 1.3960 0.4684 15 6 14.1757 1.3182 1.3416 16 1 14.0707 1.2240 2.4124 17 6 15.4311 1.3682 0.7738 18 7 16.5008 1.2997 1.5358 19 14 15.6126 1.5317 -1.0782 20 1 15.6608 2.9697 -1.4457 21 1 16.8673 0.8672 -1.5132 22 1 14.4538 0.8883 -1.7479 23 7 5.5817 1.5051 -0.7289 24 7 4.3475 1.5369 -1.0841 25 1 4.0356 1.6168 -1.9991 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 4.0462 1.2450 2.1160 34 1 9.2900 2.1307 2.3015 35 1 9.2891 0.3576 2.1449 36 1 11.8330 1.2381 2.2671 37 1 12.9527 0.5651 -0.2371 38 1 12.9541 2.3381 -0.0798 39 1 17.3839 1.3345 1.1363 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904156379.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:19 Heat of formation + Delta-G solvation = -85.582270 kcal Electronic energy + Delta-G solvation = -22153.947058 eV Core-core repulsion = 18483.083576 eV Total energy + Delta-G solvation = -3670.863481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.85082 -41.57182 -40.36540 -37.59352 -36.25385 -36.20989 -34.47110 -33.19618 -31.99868 -31.12535 -28.97172 -27.42498 -25.84445 -24.03335 -22.91761 -22.00182 -21.76121 -21.53974 -19.37335 -19.00860 -18.36586 -18.11284 -17.93401 -17.14624 -16.84849 -16.74196 -16.07412 -15.93591 -15.89761 -14.96133 -14.83834 -14.66304 -14.59902 -14.36094 -13.98876 -13.84388 -13.75572 -13.09349 -13.04744 -12.71776 -12.49720 -12.11618 -12.07139 -11.95563 -11.94361 -11.93950 -11.67295 -11.50643 -10.99092 -10.92730 -10.62792 -10.05284 -10.05117 -8.40371 -6.47867 0.12562 0.98113 1.07097 1.33073 1.35804 1.47537 1.50431 1.92010 1.95716 2.27913 2.47440 2.94869 3.27930 3.57406 3.64036 3.90024 4.02229 4.04255 4.17249 4.21104 4.35141 4.48031 4.66306 4.74294 4.87193 4.91324 4.99567 5.00525 5.06375 5.19449 5.23196 5.30124 5.35485 5.39134 5.50108 5.98825 6.05803 6.41821 6.51996 6.70303 6.79336 7.11165 7.26854 8.74137 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.044751 B = 0.002219 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.528325 B =12613.873873 C =13070.822217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.046 4.046 4 C 0.040 3.960 5 C -0.181 4.181 6 C -0.028 4.028 7 C 0.555 3.445 8 O -0.512 6.512 9 O -0.337 6.337 10 C 0.056 3.944 11 C 0.505 3.495 12 O -0.578 6.578 13 N -0.696 5.696 14 C 0.232 3.768 15 C -0.549 4.549 16 H 0.063 0.937 17 C 0.028 3.972 18 N -0.929 5.929 19 Si 0.936 3.064 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.261 1.261 23 N -0.257 5.257 24 N -0.357 5.357 25 H 0.463 0.537 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.178 0.822 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.414 0.586 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.020 -0.344 -2.657 35.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.085 4.085 4 C -0.086 4.086 5 C -0.208 4.208 6 C -0.185 4.185 7 C 0.398 3.602 8 O -0.399 6.399 9 O -0.252 6.252 10 C -0.021 4.021 11 C 0.291 3.709 12 O -0.458 6.458 13 N -0.347 5.347 14 C 0.109 3.891 15 C -0.586 4.586 16 H 0.081 0.919 17 C -0.173 4.173 18 N -0.568 5.568 19 Si 0.760 3.240 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.185 1.185 23 N -0.096 5.096 24 N -0.075 5.075 25 H 0.311 0.689 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.196 0.804 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.250 0.750 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -34.148 -0.224 -4.037 34.386 hybrid contribution 0.508 -0.059 0.158 0.535 sum -33.640 -0.282 -3.879 33.864 Atomic orbital electron populations 1.21762 0.94266 1.02188 1.02688 1.21534 0.96780 0.95161 1.02461 1.20420 0.82998 0.98854 1.06231 1.21953 0.96617 1.04215 0.85842 1.21726 0.88407 1.09133 1.01551 1.20728 0.92467 1.14735 0.90536 1.19915 0.82580 0.72248 0.85410 1.90838 1.87723 1.46874 1.14455 1.86679 1.14285 1.83249 1.40982 1.22842 0.80072 1.07489 0.91649 1.20548 0.85146 0.76762 0.88467 1.90690 1.87346 1.51049 1.16754 1.45834 1.04539 1.72289 1.12048 1.19180 0.82534 0.96072 0.91351 1.21271 0.90004 1.52415 0.94956 0.91912 1.25574 0.95249 0.93618 1.02826 1.69972 0.98769 1.50408 1.37637 0.85875 0.78447 0.79486 0.80204 1.18958 1.19761 1.18491 1.73794 1.03083 1.17790 1.14893 1.43575 1.01915 1.50630 1.11388 0.68864 0.91894 0.91801 0.92683 0.92188 0.91996 0.87384 0.87973 0.80441 0.85364 0.85408 0.74968 0.96542 0.96646 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.91 71.98 0.71 0.17 16 2 C -0.12 -0.65 5.92 30.59 0.18 -0.47 16 3 C -0.05 -0.20 5.77 29.85 0.17 -0.03 16 4 C 0.04 0.49 6.48 41.40 0.27 0.76 16 5 C -0.18 -3.32 10.73 22.42 0.24 -3.08 16 6 C -0.03 -0.74 7.17 42.42 0.30 -0.43 16 7 C 0.56 16.87 7.97 70.29 0.56 17.43 16 8 O -0.51 -15.91 16.72 19.88 0.33 -15.58 16 9 O -0.34 -11.48 9.77 -50.00 -0.49 -11.97 16 10 C 0.06 1.67 5.95 71.24 0.42 2.10 16 11 C 0.50 19.82 7.91 87.66 0.69 20.52 16 12 O -0.58 -28.06 16.50 15.76 0.26 -27.80 16 13 N -0.70 -27.97 5.55 -466.78 -2.59 -30.56 16 14 C 0.23 11.45 4.50 85.63 0.38 11.83 16 15 C -0.55 -30.28 9.83 25.60 0.25 -30.03 16 16 H 0.06 3.61 7.84 -2.91 -0.02 3.59 16 17 C 0.03 1.58 5.47 84.65 0.46 2.04 16 18 N -0.93 -55.51 13.96 21.45 0.30 -55.21 16 19 Si 0.94 44.23 27.47 68.60 1.88 46.11 16 20 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.26 -12.25 6.54 99.48 0.65 -11.60 16 23 N -0.26 -6.43 12.24 -48.22 -0.59 -7.02 16 24 N -0.36 -5.18 6.83 -47.93 -0.33 -5.51 16 25 H 0.46 3.07 8.96 -219.99 -1.97 1.10 16 26 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 27 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.13 3.14 8.14 -2.39 -0.02 3.13 16 36 H 0.41 14.13 8.32 -92.71 -0.77 13.35 16 37 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 38 H 0.02 0.80 7.57 -2.38 -0.02 0.78 16 39 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -78.53 346.91 1.73 -76.80 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -1.71 Total: 9.93 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: 4.66 Total: 20.80 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -3.21 Total: -98.30 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: 0.10 Total: -55.35 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.11 kcal Total: -78.53 1.73 -76.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904156379.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.784 kcal (2) G-P(sol) polarization free energy of solvation -78.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds