Wall clock time and date at job start Fri Apr 10 2020 14:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38116 * 126.29828 * 269.99931 * 3 2 1 5 5 C 1.47293 * 126.42602 * 0.02562 * 4 3 2 6 6 O 1.21524 * 119.99993 * 359.97438 * 5 4 3 7 7 O 1.34753 * 119.99902 * 179.97438 * 5 4 3 8 8 C 1.45200 * 116.99658 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47013 * 180.02562 * 8 7 5 10 10 O 1.21283 * 119.99967 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00080 * 180.02562 * 9 8 7 12 12 C 1.46502 * 120.00025 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47214 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00053 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00057 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99905 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99985 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47328 * 89.99451 * 17 15 13 19 19 H 1.48496 * 109.47204 * 209.99501 * 17 15 13 20 20 H 1.48507 * 109.46917 * 329.99498 * 17 15 13 21 21 C 1.41346 * 107.15097 * 179.97438 * 4 3 2 22 22 N 1.30428 * 108.00648 * 0.02562 * 21 4 3 23 23 N 1.34224 * 126.29414 * 89.68851 * 3 2 1 24 24 C 1.46500 * 125.74350 * 0.02562 * 23 3 2 25 25 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 28 28 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 29 29 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 30 30 H 1.09002 * 109.47526 * 300.00125 * 8 7 5 31 31 H 1.08994 * 109.47226 * 60.00758 * 8 7 5 32 32 H 0.97004 * 120.00487 * 359.97438 * 11 9 8 33 33 H 1.08995 * 109.47366 * 299.99586 * 12 11 9 34 34 H 1.09000 * 109.47339 * 60.00142 * 12 11 9 35 35 H 0.96997 * 120.00034 * 180.02562 * 16 15 13 36 36 H 1.07996 * 125.99672 * 179.97438 * 21 4 3 37 37 H 1.09000 * 109.47147 * 89.99714 * 24 23 3 38 38 H 1.08999 * 109.47180 * 210.00148 * 24 23 3 39 39 H 1.09004 * 109.47317 * 330.00296 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3049 2.1917 -1.1131 5 6 2.1586 1.7795 -2.5196 6 8 1.7634 0.6619 -2.7873 7 8 2.4630 2.6416 -3.5095 8 6 2.2953 2.1671 -4.8715 9 6 2.6816 3.2595 -5.8352 10 8 3.0605 4.3324 -5.4154 11 7 2.6052 3.0445 -7.1634 12 6 2.9802 4.1067 -8.1002 13 6 2.8063 3.6142 -9.5138 14 1 2.4523 2.6104 -9.6962 15 6 3.1002 4.4450 -10.5743 16 7 3.5318 5.6672 -10.3522 17 14 2.8840 3.8348 -12.3265 18 1 1.5069 4.1402 -12.7906 19 1 3.8660 4.5118 -13.2111 20 1 3.1073 2.3673 -12.3707 21 6 2.7494 3.4508 -0.6495 22 7 2.7410 3.4262 0.6545 23 7 2.2916 2.1719 1.0818 24 6 2.1344 1.7482 2.4754 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.9320 1.2975 -5.0344 31 1 1.2537 1.8904 -5.0343 32 1 2.3018 2.1865 -7.4993 33 1 2.3437 4.9763 -7.9372 34 1 4.0220 4.3833 -7.9378 35 1 3.7382 6.2518 -11.0982 36 1 3.0451 4.2862 -1.2667 37 1 3.0644 1.3009 2.8263 38 1 1.8915 2.6130 3.0928 39 1 1.3303 1.0155 2.5439 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919172046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:13:27 Heat of formation + Delta-G solvation = -79.260016 kcal Electronic energy + Delta-G solvation = -22773.193112 eV Core-core repulsion = 19102.603785 eV Total energy + Delta-G solvation = -3670.589328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.02 seconds Orbital eigenvalues (eV) -42.67189 -41.28803 -40.19641 -37.42456 -36.15942 -35.34702 -34.40063 -34.04496 -31.11267 -30.32187 -28.73591 -27.84870 -25.17367 -24.56647 -23.69289 -22.06428 -21.60332 -20.58751 -19.22433 -18.88123 -17.88955 -17.75029 -17.41205 -16.91111 -16.75881 -16.55631 -16.01230 -15.91059 -15.45393 -15.22148 -14.65783 -14.48750 -14.29530 -14.07947 -13.80276 -13.75085 -13.52799 -13.45614 -13.25587 -12.92500 -12.70871 -12.70378 -12.25294 -12.21841 -11.84244 -11.71847 -11.49766 -11.46568 -10.87776 -10.80532 -10.50582 -9.90995 -9.86303 -8.28359 -6.44864 0.22205 0.92136 1.12704 1.44819 1.47268 1.54382 1.58645 1.59306 2.06949 2.36220 2.63700 3.06846 3.38149 3.46550 3.72713 3.79231 3.92076 4.11023 4.11880 4.26321 4.28412 4.39121 4.41943 4.58598 4.65583 4.66602 4.98420 5.07410 5.11641 5.23600 5.24914 5.29896 5.39076 5.44132 5.65214 5.78346 5.83518 6.38155 6.64193 6.70389 6.83015 7.22209 7.38421 8.83828 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.038379 B = 0.002480 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.397117 B =11286.196305 C =11904.587281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C 0.180 3.820 4 C -0.314 4.314 5 C 0.547 3.453 6 O -0.528 6.528 7 O -0.346 6.346 8 C 0.064 3.936 9 C 0.499 3.501 10 O -0.584 6.584 11 N -0.699 5.699 12 C 0.266 3.734 13 C -0.556 4.556 14 H 0.087 0.913 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.986 3.014 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.255 1.255 21 C 0.099 3.901 22 N -0.321 5.321 23 N -0.353 5.353 24 C 0.080 3.920 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.097 0.903 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.413 0.587 33 H -0.008 1.008 34 H -0.008 1.008 35 H 0.269 0.731 36 H 0.199 0.801 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.150 -15.835 25.247 30.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C 0.045 3.955 4 C -0.327 4.327 5 C 0.393 3.607 6 O -0.419 6.419 7 O -0.262 6.262 8 C -0.013 4.013 9 C 0.285 3.715 10 O -0.464 6.464 11 N -0.350 5.350 12 C 0.144 3.856 13 C -0.594 4.594 14 H 0.105 0.895 15 C -0.197 4.197 16 N -0.569 5.569 17 Si 0.809 3.191 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.179 1.179 21 C -0.088 4.088 22 N -0.140 5.140 23 N -0.131 5.131 24 C -0.058 4.058 25 H 0.107 0.893 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.249 0.751 33 H 0.010 0.990 34 H 0.010 0.990 35 H 0.078 0.922 36 H 0.216 0.784 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.702 -14.575 26.611 30.871 hybrid contribution -0.034 -0.157 -2.073 2.080 sum -5.736 -14.732 24.537 29.189 Atomic orbital electron populations 1.21651 0.92413 1.03780 1.01827 1.20636 0.97718 0.86299 1.06190 1.21893 0.92523 0.95496 0.85592 1.19137 1.25409 0.98140 0.90036 1.20140 0.73171 0.82068 0.85285 1.90765 1.45283 1.21184 1.84698 1.86587 1.79455 1.44635 1.15482 1.22711 1.05660 0.95317 0.77592 1.20714 0.78229 0.88787 0.83750 1.90683 1.48576 1.28449 1.78694 1.46026 1.65854 1.18540 1.04608 1.18625 0.93488 0.85965 0.87540 1.21615 1.46467 1.01102 0.90176 0.89534 1.26069 0.93969 0.94708 1.04906 1.70134 1.44712 1.08310 1.33754 0.85141 0.78017 0.79024 0.76935 1.19636 1.21073 1.17859 1.24370 0.95073 0.97554 0.91815 1.77224 1.22969 1.00701 1.13093 1.48791 1.47612 1.08817 1.07885 1.22508 1.05543 1.03255 0.74515 0.89342 0.91546 0.94264 0.88505 0.86697 0.85755 0.85779 0.75084 0.99017 0.99011 0.92230 0.78400 0.88235 0.87923 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.89 71.98 0.71 -0.85 16 2 C -0.07 -0.88 5.39 29.85 0.16 -0.72 16 3 C 0.18 3.46 6.26 42.16 0.26 3.73 16 4 C -0.31 -8.14 6.13 -20.16 -0.12 -8.26 16 5 C 0.55 15.93 7.95 70.20 0.56 16.49 16 6 O -0.53 -15.30 14.63 19.76 0.29 -15.01 16 7 O -0.35 -11.44 9.60 -50.25 -0.48 -11.92 16 8 C 0.06 1.92 5.95 71.24 0.42 2.34 16 9 C 0.50 20.49 7.91 87.66 0.69 21.18 16 10 O -0.58 -29.97 16.50 15.76 0.26 -29.71 16 11 N -0.70 -29.26 5.55 -466.79 -2.59 -31.85 16 12 C 0.27 14.53 5.43 85.63 0.46 15.00 16 13 C -0.56 -29.92 9.28 25.60 0.24 -29.68 16 14 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 15 C 0.00 0.17 5.46 84.66 0.46 0.64 16 16 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 17 Si 0.99 42.11 29.54 68.60 2.03 44.14 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 21 C 0.10 2.58 11.87 85.67 1.02 3.60 16 22 N -0.32 -7.76 12.50 -56.25 -0.70 -8.46 16 23 N -0.35 -6.16 3.98 -354.27 -1.41 -7.56 16 24 C 0.08 0.49 11.06 127.77 1.41 1.91 16 25 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.10 1.61 6.50 -2.39 -0.02 1.60 16 29 H 0.11 0.62 7.71 -2.39 -0.02 0.60 16 30 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.41 13.85 8.32 -92.70 -0.77 13.08 16 33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H -0.01 -0.50 8.14 -2.39 -0.02 -0.51 16 35 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.20 4.98 8.06 -2.91 -0.02 4.95 16 37 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.10 0.54 8.14 -2.39 -0.02 0.53 16 39 H 0.12 0.03 7.63 -2.38 -0.02 0.02 16 Total: -1.00 -79.88 346.87 4.27 -75.61 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.31 Total: 15.15 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 6.28 Total: 25.35 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -4.42 Total: -103.61 kcal Atomic # 8 Polarization: -56.71 SS G_CDS: 0.07 Total: -56.65 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -79.88 4.27 -75.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919172046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.647 kcal (2) G-P(sol) polarization free energy of solvation -79.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.02 seconds