Wall clock time and date at job start Fri Apr 10 2020 14:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46934 * 2 1 4 4 O 1.34258 * 126.52205 * 269.97567 * 3 2 1 5 5 C 1.34052 * 108.22561 * 180.02562 * 4 3 2 6 6 N 1.29934 * 109.24084 * 359.72388 * 5 4 3 7 7 C 1.36062 * 108.47900 * 0.44156 * 6 5 4 8 8 C 1.47429 * 126.44986 * 179.82345 * 7 6 5 9 9 O 1.21607 * 119.99622 * 179.69017 * 8 7 6 10 10 N 1.34769 * 119.99787 * 359.68628 * 8 7 6 11 11 C 1.46500 * 120.00036 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.91117 * 37.44804 * 11 10 8 13 13 C 1.54913 * 111.00406 * 273.55412 * 11 10 8 14 14 N 1.47433 * 104.82906 * 204.91287 * 13 11 10 15 15 C 1.36931 * 125.64416 * 204.09110 * 14 13 11 16 16 H 1.07998 * 120.00810 * 6.64741 * 15 14 13 17 17 C 1.38817 * 119.99862 * 186.65062 * 15 14 13 18 18 N 1.31625 * 119.99829 * 7.37839 * 17 15 14 19 19 Si 1.86794 * 120.00155 * 187.10331 * 17 15 14 20 20 H 1.48491 * 109.47353 * 265.29106 * 19 17 15 21 21 H 1.48497 * 109.47341 * 25.29482 * 19 17 15 22 22 H 1.48501 * 109.46969 * 145.29043 * 19 17 15 23 23 C 1.47015 * 108.70348 * 24.35675 * 14 13 11 24 24 C 1.54335 * 107.26750 * 358.58073 * 23 14 13 25 25 H 1.09009 * 110.51410 * 96.45397 * 24 23 14 26 26 O 1.42900 * 111.00588 * 219.60292 * 24 23 14 27 27 H 1.09002 * 109.46841 * 299.99390 * 1 2 3 28 28 H 1.08991 * 109.47524 * 60.00040 * 1 2 3 29 29 H 1.08999 * 109.46815 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46988 * 240.00140 * 2 1 3 31 31 H 1.08998 * 109.47730 * 119.99578 * 2 1 3 32 32 H 1.07998 * 125.38057 * 180.02562 * 5 4 3 33 33 H 0.97000 * 120.00304 * 0.02562 * 10 8 7 34 34 H 1.08996 * 110.36780 * 86.07966 * 13 11 10 35 35 H 1.09001 * 110.36745 * 323.74593 * 13 11 10 36 36 H 0.96994 * 119.99763 * 179.73061 * 18 17 15 37 37 H 1.08999 * 109.88388 * 118.12843 * 23 14 13 38 38 H 1.08998 * 109.88395 * 239.29739 * 23 14 13 39 39 H 0.96701 * 113.99883 * 293.78476 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2991 2.1740 -1.0789 5 6 2.7236 3.3739 -0.6581 6 7 2.7250 3.3961 0.6410 7 6 2.3024 2.1845 1.0935 8 6 2.1582 1.7777 2.5032 9 8 1.7628 0.6605 2.7762 10 7 2.4647 2.6438 3.4892 11 6 2.3210 2.2397 4.8901 12 1 2.6082 1.1970 5.0257 13 6 0.8773 2.4879 5.3942 14 7 1.0085 2.6394 6.8548 15 6 0.0174 2.4148 7.7726 16 1 -0.9265 1.9958 7.4566 17 6 0.2260 2.7255 9.1094 18 7 1.3156 3.3679 9.4734 19 14 -1.0433 2.2387 10.3904 20 1 -1.9663 3.3770 10.6302 21 1 -1.8165 1.0689 9.9017 22 1 -0.3561 1.8832 11.6579 23 6 2.3777 3.0779 7.1622 24 6 3.1410 3.1685 5.8239 25 1 3.1364 4.1925 5.4501 26 8 4.4800 2.6896 5.9645 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5137 0.8900 32 1 3.0137 4.1943 -1.2978 33 1 2.7798 3.5349 3.2715 34 1 0.2409 1.6354 5.1570 35 1 0.4728 3.3989 4.9531 36 1 1.4594 3.5885 10.4069 37 1 2.3545 4.0549 7.6449 38 1 2.8620 2.3512 7.8144 39 1 5.0346 3.2352 6.5387 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076813441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:14:28 Heat of formation + Delta-G solvation = -35.443099 kcal Electronic energy + Delta-G solvation = -23940.760548 eV Core-core repulsion = 20272.071264 eV Total energy + Delta-G solvation = -3668.689284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.61245 -39.55648 -37.80867 -35.08303 -35.03381 -34.41546 -33.81591 -31.67638 -29.54750 -28.35586 -27.08860 -24.99621 -24.10443 -23.60289 -21.76908 -20.71282 -20.34000 -20.07950 -18.26563 -17.06188 -16.97458 -16.81204 -16.13792 -15.78996 -15.25729 -14.72022 -14.66414 -14.49595 -14.00858 -13.85226 -13.62570 -13.10718 -12.78417 -12.68044 -12.47858 -12.06466 -11.91355 -11.62898 -11.45259 -11.34531 -11.22687 -10.91280 -10.88863 -10.80440 -10.18459 -9.99387 -9.87959 -9.78136 -9.33853 -9.14221 -8.79131 -8.61188 -6.88613 -5.74574 -3.10628 0.97652 1.93089 2.36665 3.24177 3.37898 3.40244 3.45841 3.48404 3.89046 4.40745 4.45044 4.64026 4.72593 4.88994 5.02998 5.11054 5.20385 5.35574 5.44923 5.59517 5.60612 5.67435 5.67671 5.82424 5.88093 5.97397 6.04693 6.10065 6.16160 6.54122 6.63133 6.88870 7.24787 7.31933 7.48574 7.70982 7.76595 8.11930 8.18845 8.34684 9.15558 9.76428 10.39981 11.36033 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.023151 B = 0.003678 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.157484 B = 7611.617636 C = 8350.346485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C 0.044 3.956 4 O -0.201 6.201 5 C 0.170 3.830 6 N -0.462 5.462 7 C -0.070 4.070 8 C 0.600 3.400 9 O -0.531 6.531 10 N -0.696 5.696 11 C 0.139 3.861 12 H 0.104 0.896 13 C 0.130 3.870 14 N -0.598 5.598 15 C -0.228 4.228 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.280 1.280 22 H -0.290 1.290 23 C 0.149 3.851 24 C 0.070 3.930 25 H 0.060 0.940 26 O -0.564 6.564 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.254 0.746 33 H 0.406 0.594 34 H 0.052 0.948 35 H 0.024 0.976 36 H 0.253 0.747 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.288 -0.303 -20.606 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.013 4.013 4 O -0.087 6.087 5 C -0.058 4.058 6 N -0.191 5.191 7 C -0.190 4.190 8 C 0.385 3.615 9 O -0.409 6.409 10 N -0.345 5.345 11 C 0.034 3.966 12 H 0.122 0.878 13 C 0.003 3.997 14 N -0.326 5.326 15 C -0.356 4.356 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.216 1.216 21 H -0.205 1.205 22 H -0.216 1.216 23 C 0.024 3.976 24 C 0.010 3.990 25 H 0.077 0.923 26 O -0.369 6.369 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.137 0.863 32 H 0.270 0.730 33 H 0.241 0.759 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.928 -1.035 -20.190 20.594 hybrid contribution -0.311 0.547 0.477 0.789 sum 3.617 -0.488 -19.713 20.048 Atomic orbital electron populations 1.21709 0.92971 1.02996 1.02529 1.20406 0.97204 0.85311 1.05431 1.23834 0.98571 0.95607 0.83278 1.84366 1.63747 1.24256 1.36358 1.27984 0.99538 0.87063 0.91264 1.70740 1.16998 1.21233 1.10147 1.21583 1.10336 0.91308 0.95782 1.16674 0.77720 0.84673 0.82402 1.90794 1.46946 1.20053 1.83068 1.45715 1.66119 1.16907 1.05790 1.22293 0.96561 1.00198 0.77558 0.87800 1.21848 0.92973 0.98720 0.86185 1.44239 1.08855 1.79978 0.99523 1.19089 0.93939 1.35258 0.87348 0.90177 1.24813 0.98010 1.00275 0.97250 1.69915 1.26939 1.44068 1.16056 0.86063 0.80246 0.78135 0.81121 1.21605 1.20516 1.21584 1.21868 0.84326 1.01109 0.90314 1.23437 0.82360 0.95203 0.97988 0.92264 1.86459 1.22449 1.56171 1.71774 0.91509 0.92748 0.90994 0.89869 0.86302 0.73028 0.75932 0.92969 0.95853 0.93688 0.91569 0.93652 0.77617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.89 37.16 0.37 -1.03 16 2 C -0.05 -0.47 5.93 -27.88 -0.17 -0.64 16 3 C 0.04 0.53 6.69 -35.08 -0.23 0.29 16 4 O -0.20 -2.05 10.73 6.50 0.07 -1.98 16 5 C 0.17 1.50 13.19 51.96 0.69 2.19 16 6 N -0.46 -5.80 11.06 -11.48 -0.13 -5.93 16 7 C -0.07 -1.00 6.99 -83.02 -0.58 -1.58 16 8 C 0.60 10.10 7.81 -12.52 -0.10 10.00 16 9 O -0.53 -9.99 14.55 5.27 0.08 -9.91 16 10 N -0.70 -11.64 5.23 -52.80 -0.28 -11.92 16 11 C 0.14 2.71 3.04 -65.78 -0.20 2.51 16 12 H 0.10 2.25 7.73 -51.93 -0.40 1.85 16 13 C 0.13 2.86 6.93 -2.52 -0.02 2.85 16 14 N -0.60 -15.54 3.39 -170.07 -0.58 -16.11 16 15 C -0.23 -6.44 10.26 -15.06 -0.15 -6.60 16 16 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 17 C -0.01 -0.20 5.45 -17.43 -0.09 -0.30 16 18 N -0.92 -26.82 10.48 55.49 0.58 -26.24 16 19 Si 0.91 22.19 29.56 -169.99 -5.02 17.16 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 C 0.15 3.59 5.21 -3.06 -0.02 3.57 16 24 C 0.07 1.34 3.94 -24.89 -0.10 1.24 16 25 H 0.06 1.02 8.00 -51.92 -0.42 0.61 16 26 O -0.56 -9.95 13.40 -35.23 -0.47 -10.42 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.12 1.41 6.48 -51.93 -0.34 1.07 16 32 H 0.25 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.41 6.12 8.24 -40.82 -0.34 5.79 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.07 1.72 6.99 -51.93 -0.36 1.36 16 38 H 0.05 1.21 7.83 -51.93 -0.41 0.80 16 39 H 0.38 5.04 9.12 45.56 0.42 5.45 16 LS Contribution 332.50 15.07 5.01 5.01 Total: -1.00 -34.09 332.50 -5.69 -39.79 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.35 Total: 8.05 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -0.61 Total: 12.51 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.40 Total: -60.21 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.33 Total: -22.31 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.09 -5.69 -39.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076813441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.343 kcal (2) G-P(sol) polarization free energy of solvation -34.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds