Wall clock time and date at job start Fri Apr 10 2020 14:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46883 * 2 1 4 4 C 1.35318 * 126.66618 * 89.99607 * 3 2 1 5 5 C 1.42274 * 103.92059 * 179.97438 * 4 3 2 6 6 C 1.48332 * 126.93744 * 180.02562 * 5 4 3 7 7 O 1.21497 * 119.99729 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99786 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99686 * 180.02562 * 8 6 5 10 10 H 1.08997 * 110.88853 * 37.42747 * 9 8 6 11 11 C 1.54912 * 111.00340 * 273.54097 * 9 8 6 12 12 N 1.47425 * 104.83156 * 204.87978 * 11 9 8 13 13 C 1.36930 * 125.64778 * 204.09123 * 12 11 9 14 14 H 1.07996 * 120.00002 * 10.05988 * 13 12 11 15 15 C 1.38810 * 119.99961 * 190.06311 * 13 12 11 16 16 N 1.31624 * 119.99896 * 195.14623 * 15 13 12 17 17 Si 1.86798 * 120.00326 * 15.13878 * 15 13 12 18 18 H 1.48505 * 109.47267 * 174.49184 * 17 15 13 19 19 H 1.48509 * 109.46649 * 54.49599 * 17 15 13 20 20 H 1.48496 * 109.47237 * 294.49670 * 17 15 13 21 21 C 1.47021 * 108.70462 * 24.35748 * 12 11 9 22 22 C 1.54336 * 107.26378 * 358.58474 * 21 12 11 23 23 H 1.09000 * 110.51510 * 96.45432 * 22 21 12 24 24 O 1.42904 * 111.00042 * 219.59922 * 22 21 12 25 25 N 1.30987 * 106.12158 * 0.26468 * 5 4 3 26 26 O 1.20907 * 111.43762 * 359.53378 * 25 5 4 27 27 H 1.09007 * 109.46997 * 60.00495 * 1 2 3 28 28 H 1.09008 * 109.46978 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47468 * 300.00195 * 1 2 3 30 30 H 1.08993 * 109.47666 * 239.99505 * 2 1 3 31 31 H 1.09003 * 109.46630 * 119.99195 * 2 1 3 32 32 H 1.08001 * 128.03876 * 0.02562 * 4 3 2 33 33 H 0.97000 * 120.00517 * 359.97438 * 8 6 5 34 34 H 1.08997 * 110.36463 * 86.04448 * 11 9 8 35 35 H 1.09001 * 110.46069 * 323.76440 * 11 9 8 36 36 H 0.97000 * 119.99952 * 2.96303 * 16 15 13 37 37 H 1.09008 * 109.88462 * 118.12838 * 21 12 11 38 38 H 1.08998 * 109.88225 * 239.29524 * 21 12 11 39 39 H 0.96697 * 113.99914 * 293.77954 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3015 2.1827 1.0854 5 6 2.7395 3.4196 0.5353 6 6 3.1669 4.6266 1.2841 7 8 3.1652 4.6200 2.4990 8 7 3.5572 5.7305 0.6167 9 6 3.9799 6.9224 1.3562 10 1 4.5398 6.6470 2.2499 11 6 2.7645 7.8134 1.7148 12 7 3.3230 9.1689 1.8698 13 6 2.7706 10.1798 2.6100 14 1 1.9413 9.9743 3.2706 15 6 3.2764 11.4687 2.5112 16 7 2.9628 12.3700 3.4178 17 14 4.4023 11.9240 1.0920 18 1 4.6953 13.3791 1.1397 19 1 3.7356 11.5953 -0.1937 20 1 5.6707 11.1598 1.2015 21 6 4.5680 9.2576 1.0928 22 6 4.8079 7.8739 0.4526 23 1 4.4336 7.8565 -0.5710 24 8 6.1936 7.5265 0.4882 25 7 2.6840 3.2789 -0.7658 26 8 2.2995 2.1751 -1.0750 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5137 0.8901 32 1 2.2069 1.9140 2.1272 33 1 3.5590 5.7356 -0.3533 34 1 2.3125 7.4803 2.6490 35 1 2.0288 7.7959 0.9107 36 1 2.4134 12.1225 4.1779 37 1 4.4668 10.0153 0.3157 38 1 5.3992 9.5082 1.7518 39 1 6.7549 8.0913 -0.0604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078030126.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:14:02 Heat of formation + Delta-G solvation = 14.259376 kcal Electronic energy + Delta-G solvation = -23571.686147 eV Core-core repulsion = 19905.152124 eV Total energy + Delta-G solvation = -3666.534023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.33531 -39.90085 -38.24433 -35.44335 -35.32265 -34.42945 -33.96182 -32.01102 -30.52442 -28.88046 -27.94605 -25.27097 -24.49305 -23.64249 -22.63002 -21.22363 -20.45343 -20.12591 -18.12543 -17.89378 -17.51978 -17.33481 -16.81705 -16.34652 -15.14833 -15.07976 -14.86864 -14.62276 -14.56484 -13.86867 -13.78346 -13.60265 -13.09852 -12.93816 -12.83389 -12.66795 -12.29406 -12.03839 -11.92905 -11.73983 -11.44896 -11.21307 -10.67908 -10.61778 -10.48250 -10.32087 -9.94658 -9.75985 -9.34057 -9.17405 -9.04062 -8.71418 -7.13562 -6.36170 -3.27956 0.89477 1.42367 2.61027 2.85024 3.08381 3.32879 3.41707 3.64635 3.75728 4.14062 4.20229 4.52371 4.56402 4.67672 4.72319 4.74614 4.83508 5.02443 5.14539 5.17279 5.21885 5.28540 5.32831 5.42329 5.47952 5.59961 5.70886 5.74367 5.74888 6.12078 6.23506 6.43305 6.52129 6.62795 7.33413 7.56001 7.72851 7.76706 8.04615 8.28112 8.98561 9.47984 10.13014 11.14968 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.031179 B = 0.003256 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.827869 B = 8597.758900 C = 9013.796818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.034 4.034 4 C -0.180 4.180 5 C -0.019 4.019 6 C 0.598 3.402 7 O -0.516 6.516 8 N -0.699 5.699 9 C 0.139 3.861 10 H 0.111 0.889 11 C 0.130 3.870 12 N -0.605 5.605 13 C -0.324 4.324 14 H 0.082 0.918 15 C -0.022 4.022 16 N -0.925 5.925 17 Si 1.072 2.928 18 H -0.299 1.299 19 H -0.298 1.298 20 H -0.286 1.286 21 C 0.084 3.916 22 C 0.087 3.913 23 H 0.069 0.931 24 O -0.557 6.557 25 N -0.333 5.333 26 O 0.122 5.878 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.181 0.819 33 H 0.405 0.595 34 H 0.059 0.941 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.036 0.964 38 H 0.062 0.938 39 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 -24.791 -10.943 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 C -0.097 4.097 4 C -0.202 4.202 5 C -0.178 4.178 6 C 0.381 3.619 7 O -0.390 6.390 8 N -0.350 5.350 9 C 0.034 3.966 10 H 0.128 0.872 11 C 0.003 3.997 12 N -0.334 5.334 13 C -0.451 4.451 14 H 0.099 0.901 15 C -0.222 4.222 16 N -0.566 5.566 17 Si 0.906 3.094 18 H -0.227 1.227 19 H -0.227 1.227 20 H -0.214 1.214 21 C -0.042 4.042 22 C 0.027 3.973 23 H 0.087 0.913 24 O -0.362 6.362 25 N -0.034 5.034 26 O 0.046 5.954 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.198 0.802 33 H 0.240 0.760 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.339 -23.029 -11.229 25.623 hybrid contribution -0.845 -1.074 0.487 1.450 sum -0.506 -24.103 -10.742 26.394 Atomic orbital electron populations 1.21823 0.93280 1.02886 1.03102 1.20155 0.96786 0.85994 1.05013 1.24530 1.02433 0.97263 0.85449 1.22450 1.04605 0.91574 1.01600 1.23546 1.06168 0.98008 0.90095 1.16837 0.77661 0.80919 0.86444 1.90833 1.53246 1.82536 1.12354 1.45720 1.66093 1.12676 1.10511 1.22332 0.95953 0.82997 0.95276 0.87157 1.21878 0.93001 0.85135 0.99705 1.44595 1.22378 1.09273 1.57177 1.20194 1.17298 0.87728 1.19869 0.90057 1.25863 1.01677 0.91354 1.03272 1.70895 1.38487 1.35825 1.11406 0.83820 0.76000 0.74502 0.75095 1.22717 1.22700 1.21351 1.22697 0.91911 0.94299 0.95281 1.23036 0.81845 0.94540 0.97915 0.91293 1.86514 1.17595 1.59445 1.72678 1.74173 1.14257 0.99314 1.15643 1.84765 1.60074 1.17061 1.33484 0.91938 0.91097 0.91870 0.89081 0.88215 0.80162 0.76032 0.92241 0.95257 0.92706 0.94708 0.91988 0.77324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.89 37.16 0.37 -0.27 16 2 C -0.04 -0.18 6.50 -27.88 -0.18 -0.36 16 3 C -0.03 -0.28 6.73 -35.35 -0.24 -0.52 16 4 C -0.18 -1.91 10.92 -39.07 -0.43 -2.34 16 5 C -0.02 -0.26 7.19 -82.52 -0.59 -0.85 16 6 C 0.60 9.75 7.85 -12.11 -0.10 9.66 16 7 O -0.52 -9.97 16.70 5.37 0.09 -9.88 16 8 N -0.70 -10.91 5.23 -52.52 -0.27 -11.19 16 9 C 0.14 2.56 3.04 -65.78 -0.20 2.36 16 10 H 0.11 2.25 7.73 -51.93 -0.40 1.85 16 11 C 0.13 2.77 6.93 -2.53 -0.02 2.76 16 12 N -0.61 -15.15 3.33 -170.07 -0.57 -15.72 16 13 C -0.32 -9.45 10.56 -15.06 -0.16 -9.61 16 14 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 15 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 16 N -0.93 -29.32 13.71 55.49 0.76 -28.56 16 17 Si 1.07 26.53 24.52 -169.99 -4.17 22.36 16 18 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 19 H -0.30 -7.04 6.82 56.52 0.39 -6.65 16 20 H -0.29 -6.38 5.41 56.52 0.31 -6.08 16 21 C 0.08 1.81 4.40 -3.06 -0.01 1.80 16 22 C 0.09 1.48 3.94 -24.89 -0.10 1.39 16 23 H 0.07 1.02 8.00 -51.93 -0.42 0.60 16 24 O -0.56 -8.65 13.40 -35.23 -0.47 -9.12 16 25 N -0.33 -4.21 11.84 33.30 0.39 -3.81 16 26 O 0.12 1.27 11.18 17.26 0.19 1.46 16 27 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 28 H 0.07 0.19 8.14 -51.92 -0.42 -0.23 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.18 1.65 8.06 -52.49 -0.42 1.22 16 33 H 0.40 5.45 8.28 -40.82 -0.34 5.11 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.26 8.25 8.73 -40.82 -0.36 7.90 16 37 H 0.04 0.77 3.89 -51.92 -0.20 0.57 16 38 H 0.06 1.42 6.62 -51.93 -0.34 1.08 16 39 H 0.38 4.13 9.12 45.56 0.42 4.54 16 LS Contribution 328.15 15.07 4.95 4.95 Total: -1.00 -35.64 328.15 -5.20 -40.84 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -4.35 Total: 5.41 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.75 Total: 3.25 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.31 Total: -59.27 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.19 Total: -17.53 kcal Atomic # 14 Polarization: 26.53 SS G_CDS: -4.17 Total: 22.36 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.64 -5.20 -40.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078030126.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.102 kcal (2) G-P(sol) polarization free energy of solvation -35.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds