Wall clock time and date at job start Fri Apr 10 2020 14:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47172 * 2 1 4 4 N 1.29934 * 125.37555 * 90.31889 * 3 2 1 5 5 C 1.36068 * 108.47651 * 180.11586 * 4 3 2 6 6 C 1.47416 * 126.45364 * 179.85819 * 5 4 3 7 7 O 1.21608 * 120.00570 * 179.68901 * 6 5 4 8 8 N 1.34780 * 119.99653 * 359.68421 * 6 5 4 9 9 C 1.46505 * 119.99778 * 180.02562 * 8 6 5 10 10 H 1.08996 * 110.77820 * 36.79003 * 9 8 6 11 11 C 1.54327 * 110.71733 * 273.54375 * 9 8 6 12 12 N 1.47022 * 107.27230 * 263.83086 * 11 9 8 13 13 C 1.36929 * 125.64600 * 181.02426 * 12 11 9 14 14 H 1.08004 * 120.00341 * 0.28040 * 13 12 11 15 15 C 1.38815 * 120.00031 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99916 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99958 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46986 * 90.00489 * 17 15 13 19 19 H 1.48496 * 109.47029 * 210.00506 * 17 15 13 20 20 H 1.48499 * 109.47352 * 330.00336 * 17 15 13 21 21 C 1.47423 * 108.70234 * 1.29219 * 12 11 9 22 22 C 1.55132 * 104.72360 * 335.54986 * 21 12 11 23 23 H 1.09000 * 111.22509 * 279.17880 * 22 21 12 24 24 O 1.42895 * 110.90513 * 155.27806 * 22 21 12 25 25 C 1.36092 * 107.09966 * 359.59344 * 5 4 3 26 26 O 1.34049 * 125.37928 * 269.97525 * 3 2 1 27 27 H 1.08997 * 109.47694 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46563 * 299.99580 * 1 2 3 29 29 H 1.09000 * 109.47295 * 59.99401 * 1 2 3 30 30 H 1.09000 * 109.46685 * 239.99942 * 2 1 3 31 31 H 1.09000 * 109.47295 * 120.00599 * 2 1 3 32 32 H 0.97001 * 120.00029 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.87290 * 144.41696 * 11 9 8 34 34 H 1.08998 * 109.88021 * 23.25165 * 11 9 8 35 35 H 0.97000 * 120.00284 * 179.97438 * 16 15 13 36 36 H 1.08999 * 110.36884 * 94.48325 * 21 12 11 37 37 H 1.09006 * 110.36212 * 216.80310 * 21 12 11 38 38 H 0.96707 * 114.00561 * 67.97433 * 24 22 21 39 39 H 1.08008 * 126.52563 * 180.20757 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2886 2.1280 1.0594 5 6 2.7181 3.3571 0.6639 6 6 3.1133 4.4718 1.5438 7 8 3.4864 5.5242 1.0619 8 7 3.0611 4.3247 2.8826 9 6 3.4534 5.4328 3.7571 10 1 3.1443 6.3881 3.3330 11 6 4.9754 5.4150 4.0115 12 7 5.1965 4.7200 5.2881 13 6 6.4121 4.5101 5.8824 14 1 7.3136 4.8727 5.4108 15 6 6.4853 3.8370 7.0942 16 7 5.3863 3.4000 7.6717 17 14 8.1437 3.5514 7.9053 18 1 8.4584 4.6916 8.8032 19 1 8.0978 2.2959 8.6969 20 1 9.1931 3.4398 6.8605 21 6 3.8932 4.2807 5.8191 22 6 2.8611 5.2459 5.1790 23 1 2.8233 6.1947 5.7142 24 8 1.5672 4.6425 5.1197 25 6 2.7197 3.3616 -0.6970 26 8 2.2915 2.1523 -1.0929 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.7638 3.4852 3.2670 33 1 5.3524 6.4358 4.0750 34 1 5.4796 4.8807 3.2063 35 1 5.4374 2.9294 8.5183 36 1 3.6895 3.2521 5.5216 37 1 3.8756 4.3730 6.9051 38 1 1.1569 4.5056 5.9847 39 1 3.0098 4.1820 -1.3368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083418482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:14:46 Heat of formation + Delta-G solvation = -34.096560 kcal Electronic energy + Delta-G solvation = -23918.556145 eV Core-core repulsion = 20249.925251 eV Total energy + Delta-G solvation = -3668.630893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.48322 -39.52765 -37.70747 -35.11223 -35.05647 -34.09695 -33.68266 -31.60210 -29.63965 -28.44378 -27.10992 -24.84049 -24.53263 -23.75048 -21.44663 -20.51648 -20.34825 -19.69327 -18.18527 -16.99653 -16.93941 -16.80530 -16.35209 -15.62603 -15.00273 -14.89853 -14.70675 -14.47458 -13.97139 -13.77271 -13.52943 -13.00553 -12.95350 -12.73097 -12.39689 -12.27211 -12.08200 -11.50614 -11.34856 -11.26186 -11.10853 -10.94034 -10.86529 -10.82423 -10.23412 -10.10763 -9.89826 -9.74921 -9.18275 -9.09602 -8.74717 -8.56024 -6.90587 -5.71103 -3.13115 1.09716 2.01390 2.47454 3.34148 3.38192 3.43275 3.45304 3.50285 3.80583 4.40165 4.59438 4.62814 4.80403 4.84322 4.95368 5.10662 5.30221 5.39860 5.44410 5.48025 5.51825 5.54627 5.69106 5.71355 5.83042 5.87694 6.02752 6.15556 6.25184 6.49365 6.64806 6.97713 7.31189 7.41967 7.54495 7.72317 7.93315 8.08842 8.26693 8.48450 9.15355 9.75820 10.38802 11.33013 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.003883 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.549648 B = 7208.778213 C = 7507.838497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.026 4.026 3 C 0.194 3.806 4 N -0.453 5.453 5 C -0.061 4.061 6 C 0.598 3.402 7 O -0.548 6.548 8 N -0.676 5.676 9 C 0.142 3.858 10 H 0.093 0.907 11 C 0.126 3.874 12 N -0.600 5.600 13 C -0.222 4.222 14 H 0.080 0.920 15 C -0.011 4.011 16 N -0.924 5.924 17 Si 0.917 3.083 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.127 3.873 22 C 0.064 3.936 23 H 0.073 0.927 24 O -0.565 6.565 25 C 0.004 3.996 26 O -0.199 6.199 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.415 0.585 33 H 0.038 0.962 34 H 0.032 0.968 35 H 0.253 0.747 36 H 0.022 0.978 37 H 0.112 0.888 38 H 0.378 0.622 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.829 -4.364 -13.701 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.064 4.064 3 C -0.016 4.016 4 N -0.183 5.183 5 C -0.181 4.181 6 C 0.383 3.617 7 O -0.427 6.427 8 N -0.326 5.326 9 C 0.037 3.963 10 H 0.110 0.890 11 C 0.000 4.000 12 N -0.328 5.328 13 C -0.350 4.350 14 H 0.097 0.903 15 C -0.206 4.206 16 N -0.573 5.573 17 Si 0.747 3.253 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.207 1.207 21 C 0.002 3.998 22 C 0.003 3.997 23 H 0.090 0.910 24 O -0.369 6.369 25 C -0.070 4.070 26 O -0.085 6.085 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.251 0.749 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.129 0.871 38 H 0.225 0.775 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -10.416 -3.916 -13.852 17.768 hybrid contribution 0.830 -0.263 0.505 1.007 sum -9.585 -4.179 -13.347 16.955 Atomic orbital electron populations 1.21793 0.92989 1.03028 1.03078 1.20109 0.96924 0.83964 1.05451 1.26364 0.99839 0.97023 0.78336 1.70819 1.15083 1.02577 1.29792 1.21887 1.08962 0.94230 0.93041 1.16724 0.77830 0.85037 0.82136 1.90789 1.49061 1.27344 1.75545 1.45508 1.64661 1.17916 1.04470 1.22081 0.95318 0.89927 0.88986 0.88950 1.21754 0.91696 0.96589 0.89998 1.44335 1.03170 1.65613 1.19639 1.19110 0.83862 1.30323 1.01671 0.90265 1.24780 0.97581 1.00472 0.97761 1.69740 1.25121 1.43683 1.18745 0.86030 0.82701 0.77341 0.79189 1.21525 1.21622 1.20711 1.22623 0.82331 0.93193 1.01667 1.23747 0.83491 0.97427 0.95009 0.90952 1.86359 1.31951 1.84191 1.34424 1.25239 0.99469 0.86578 0.95724 1.84363 1.63565 1.22620 1.37979 0.90831 0.91506 0.92218 0.88805 0.87272 0.74861 0.94411 0.95014 0.93670 0.96019 0.87068 0.77460 0.75363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.65 16 2 C -0.03 -0.21 6.56 -27.88 -0.18 -0.39 16 3 C 0.19 2.35 7.56 -13.08 -0.10 2.25 16 4 N -0.45 -6.95 11.06 -7.66 -0.08 -7.04 16 5 C -0.06 -0.97 6.99 -83.02 -0.58 -1.55 16 6 C 0.60 11.06 7.81 -12.52 -0.10 10.96 16 7 O -0.55 -11.01 16.62 5.27 0.09 -10.92 16 8 N -0.68 -12.85 4.78 -53.10 -0.25 -13.10 16 9 C 0.14 2.78 3.13 -66.09 -0.21 2.57 16 10 H 0.09 1.74 7.70 -51.93 -0.40 1.34 16 11 C 0.13 2.81 6.98 -3.06 -0.02 2.79 16 12 N -0.60 -15.40 3.39 -169.93 -0.58 -15.97 16 13 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 14 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 15 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 16 N -0.92 -26.36 10.08 55.49 0.56 -25.80 16 17 Si 0.92 21.99 29.55 -169.99 -5.02 16.96 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 C 0.13 3.01 5.62 -2.41 -0.01 2.99 16 22 C 0.06 1.21 4.23 -24.46 -0.10 1.11 16 23 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 24 O -0.56 -9.50 12.63 -35.23 -0.44 -9.94 16 25 C 0.00 0.04 11.94 29.96 0.36 0.40 16 26 O -0.20 -2.37 10.73 6.52 0.07 -2.30 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.41 8.03 7.93 -40.82 -0.32 7.71 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.03 0.75 8.04 -51.93 -0.42 0.33 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 2.90 5.85 -51.93 -0.30 2.59 16 38 H 0.38 4.86 9.12 45.56 0.42 5.28 16 39 H 0.23 2.16 8.06 -52.48 -0.42 1.74 16 LS Contribution 334.62 15.07 5.04 5.04 Total: -1.00 -33.46 334.62 -5.83 -39.30 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -4.38 Total: 10.01 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: -0.83 Total: 13.76 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.36 Total: -61.92 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.29 Total: -23.16 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.46 -5.83 -39.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083418482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.202 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds