Wall clock time and date at job start Fri Apr 10 2020 14:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47172 * 2 1 4 4 N 1.29934 * 125.37555 * 90.31889 * 3 2 1 5 5 C 1.36068 * 108.47651 * 180.11586 * 4 3 2 6 6 C 1.47416 * 126.45364 * 179.85819 * 5 4 3 7 7 O 1.21608 * 120.00570 * 179.68901 * 6 5 4 8 8 N 1.34780 * 119.99653 * 359.68421 * 6 5 4 9 9 C 1.46505 * 119.99778 * 180.02562 * 8 6 5 10 10 H 1.08996 * 110.77820 * 36.79003 * 9 8 6 11 11 C 1.54327 * 110.71733 * 273.54375 * 9 8 6 12 12 N 1.47022 * 107.27230 * 263.83086 * 11 9 8 13 13 C 1.36929 * 125.64600 * 181.02426 * 12 11 9 14 14 H 1.08004 * 120.00341 * 0.28040 * 13 12 11 15 15 C 1.38815 * 120.00031 * 179.97438 * 13 12 11 16 16 N 1.31617 * 119.99916 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99958 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46986 * 90.00489 * 17 15 13 19 19 H 1.48496 * 109.47029 * 210.00506 * 17 15 13 20 20 H 1.48499 * 109.47352 * 330.00336 * 17 15 13 21 21 C 1.47423 * 108.70234 * 1.29219 * 12 11 9 22 22 C 1.55132 * 104.72360 * 335.54986 * 21 12 11 23 23 H 1.09000 * 111.22509 * 279.17880 * 22 21 12 24 24 O 1.42895 * 110.90513 * 155.27806 * 22 21 12 25 25 C 1.36092 * 107.09966 * 359.59344 * 5 4 3 26 26 O 1.34049 * 125.37928 * 269.97525 * 3 2 1 27 27 H 1.08997 * 109.47694 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46563 * 299.99580 * 1 2 3 29 29 H 1.09000 * 109.47295 * 59.99401 * 1 2 3 30 30 H 1.09000 * 109.46685 * 239.99942 * 2 1 3 31 31 H 1.09000 * 109.47295 * 120.00599 * 2 1 3 32 32 H 0.97001 * 120.00029 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.87290 * 144.41696 * 11 9 8 34 34 H 1.08998 * 109.88021 * 23.25165 * 11 9 8 35 35 H 0.97000 * 120.00284 * 179.97438 * 16 15 13 36 36 H 1.08999 * 110.36884 * 94.48325 * 21 12 11 37 37 H 1.09006 * 110.36212 * 216.80310 * 21 12 11 38 38 H 0.96707 * 114.00561 * 67.97433 * 24 22 21 39 39 H 1.08008 * 126.52563 * 180.20757 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2886 2.1280 1.0594 5 6 2.7181 3.3571 0.6639 6 6 3.1133 4.4718 1.5438 7 8 3.4864 5.5242 1.0619 8 7 3.0611 4.3247 2.8826 9 6 3.4534 5.4328 3.7571 10 1 3.1443 6.3881 3.3330 11 6 4.9754 5.4150 4.0115 12 7 5.1965 4.7200 5.2881 13 6 6.4121 4.5101 5.8824 14 1 7.3136 4.8727 5.4108 15 6 6.4853 3.8370 7.0942 16 7 5.3863 3.4000 7.6717 17 14 8.1437 3.5514 7.9053 18 1 8.4584 4.6916 8.8032 19 1 8.0978 2.2959 8.6969 20 1 9.1931 3.4398 6.8605 21 6 3.8932 4.2807 5.8191 22 6 2.8611 5.2459 5.1790 23 1 2.8233 6.1947 5.7142 24 8 1.5672 4.6425 5.1197 25 6 2.7197 3.3616 -0.6970 26 8 2.2915 2.1523 -1.0929 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.7638 3.4852 3.2670 33 1 5.3524 6.4358 4.0750 34 1 5.4796 4.8807 3.2063 35 1 5.4374 2.9294 8.5183 36 1 3.6895 3.2521 5.5216 37 1 3.8756 4.3730 6.9051 38 1 1.1569 4.5056 5.9847 39 1 3.0098 4.1820 -1.3368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083418482.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:14:45 Heat of formation + Delta-G solvation = -62.594129 kcal Electronic energy + Delta-G solvation = -23919.791892 eV Core-core repulsion = 20249.925251 eV Total energy + Delta-G solvation = -3669.866641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.49354 -41.04544 -39.30516 -36.67660 -36.11495 -35.36330 -34.85194 -33.49820 -30.73671 -30.14186 -28.87178 -26.58806 -25.45399 -24.99915 -22.55108 -22.29642 -21.57220 -21.28090 -19.46256 -18.90057 -18.30812 -17.90712 -17.52641 -17.21481 -16.70385 -16.07716 -15.93637 -15.64527 -15.47182 -15.12049 -14.77231 -14.62908 -14.36823 -14.13589 -13.91027 -13.58436 -13.21129 -12.89683 -12.79137 -12.73379 -12.63370 -12.36307 -12.06804 -12.04845 -11.97690 -11.89389 -11.71108 -11.30036 -10.85944 -10.77831 -10.27109 -9.99317 -8.96386 -7.81852 -5.27510 0.03392 0.92500 1.46623 1.48068 1.53938 1.56825 2.01185 2.18006 2.45886 2.81379 3.08180 3.29083 3.62303 3.67168 3.75018 3.79134 3.98112 4.20694 4.25671 4.28595 4.36178 4.47766 4.55519 4.59974 4.65783 4.81831 4.85733 4.98446 5.04985 5.06463 5.34642 5.38606 5.39606 5.45494 5.69366 6.21935 6.28692 6.56933 6.84361 7.02145 7.06770 7.69542 8.32371 9.19600 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.003883 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.549648 B = 7208.778213 C = 7507.838497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.027 4.027 3 C 0.203 3.797 4 N -0.490 5.490 5 C -0.102 4.102 6 C 0.597 3.403 7 O -0.570 6.570 8 N -0.680 5.680 9 C 0.149 3.851 10 H 0.106 0.894 11 C 0.127 3.873 12 N -0.618 5.618 13 C -0.245 4.245 14 H 0.078 0.922 15 C -0.059 4.059 16 N -0.945 5.945 17 Si 0.982 3.018 18 H -0.281 1.281 19 H -0.291 1.291 20 H -0.275 1.275 21 C 0.136 3.864 22 C 0.087 3.913 23 H 0.091 0.909 24 O -0.563 6.563 25 C 0.031 3.969 26 O -0.192 6.192 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.412 0.588 33 H 0.046 0.954 34 H 0.014 0.986 35 H 0.250 0.750 36 H -0.007 1.007 37 H 0.087 0.913 38 H 0.398 0.602 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.366 -4.838 -14.984 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.007 4.007 4 N -0.220 5.220 5 C -0.221 4.221 6 C 0.384 3.616 7 O -0.450 6.450 8 N -0.329 5.329 9 C 0.043 3.957 10 H 0.124 0.876 11 C 0.001 3.999 12 N -0.345 5.345 13 C -0.374 4.374 14 H 0.096 0.904 15 C -0.252 4.252 16 N -0.594 5.594 17 Si 0.810 3.190 18 H -0.208 1.208 19 H -0.218 1.218 20 H -0.200 1.200 21 C 0.010 3.990 22 C 0.027 3.973 23 H 0.108 0.892 24 O -0.370 6.370 25 C -0.044 4.044 26 O -0.078 6.078 27 H 0.116 0.884 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.248 0.752 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.060 0.940 36 H 0.011 0.989 37 H 0.105 0.895 38 H 0.248 0.752 39 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -10.976 -4.385 -15.135 19.204 hybrid contribution 0.958 -0.188 0.840 1.288 sum -10.018 -4.573 -14.295 18.045 Atomic orbital electron populations 1.21778 0.92022 1.04389 1.02247 1.20427 0.97576 0.81516 1.06997 1.27241 0.97918 0.97957 0.77611 1.70773 1.16803 1.02918 1.31470 1.21683 1.12160 0.94315 0.93951 1.17058 0.77004 0.85535 0.82027 1.90757 1.50100 1.28391 1.75794 1.45511 1.64939 1.17566 1.04864 1.21964 0.93374 0.90829 0.89544 0.87640 1.21815 0.93802 0.96182 0.88102 1.44572 1.03278 1.65858 1.20833 1.19431 0.84933 1.30764 1.02243 0.90374 1.25587 1.00992 1.00374 0.98248 1.69964 1.26764 1.43913 1.18742 0.85031 0.78846 0.77011 0.78111 1.20811 1.21772 1.20036 1.22403 0.83205 0.92966 1.00381 1.23377 0.83134 0.96717 0.94119 0.89173 1.86339 1.30526 1.83968 1.36166 1.25763 0.96676 0.87073 0.94840 1.84416 1.63260 1.22314 1.37763 0.88382 0.93405 0.91948 0.85886 0.87036 0.75248 0.93621 0.96768 0.94043 0.98879 0.89522 0.75223 0.72425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.89 71.98 0.71 -0.94 16 2 C -0.03 -0.37 6.56 29.85 0.20 -0.17 16 3 C 0.20 4.62 7.56 88.39 0.67 5.29 16 4 N -0.49 -14.91 11.06 -293.04 -3.24 -18.15 16 5 C -0.10 -3.23 6.99 40.41 0.28 -2.94 16 6 C 0.60 22.14 7.81 86.66 0.68 22.82 16 7 O -0.57 -22.74 16.62 -4.05 -0.07 -22.81 16 8 N -0.68 -26.09 4.78 -440.16 -2.10 -28.19 16 9 C 0.15 5.77 3.13 46.18 0.14 5.92 16 10 H 0.11 3.87 7.70 -2.39 -0.02 3.85 16 11 C 0.13 5.74 6.98 86.73 0.61 6.35 16 12 N -0.62 -32.35 3.39 -691.53 -2.35 -34.70 16 13 C -0.25 -13.91 10.27 84.04 0.86 -13.05 16 14 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 15 C -0.06 -3.32 5.49 84.86 0.47 -2.85 16 16 N -0.94 -54.85 10.08 21.65 0.22 -54.64 16 17 Si 0.98 45.46 29.55 68.60 2.03 47.48 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 C 0.14 6.56 5.62 86.93 0.49 7.05 16 22 C 0.09 3.27 4.23 32.06 0.14 3.41 16 23 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 24 O -0.56 -18.34 12.63 -148.98 -1.88 -20.22 16 25 C 0.03 0.72 11.94 67.32 0.80 1.53 16 26 O -0.19 -4.14 10.73 0.43 0.00 -4.14 16 27 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.41 16.29 7.93 -92.71 -0.73 15.55 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.01 0.69 8.04 -2.39 -0.02 0.67 16 35 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 36 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H 0.09 4.64 5.85 -2.38 -0.01 4.62 16 38 H 0.40 9.65 9.12 -74.05 -0.68 8.98 16 39 H 0.26 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -73.17 334.62 -1.66 -74.83 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -0.31 Total: 28.14 kcal Atomic # 6 Polarization: 26.35 SS G_CDS: 6.04 Total: 32.39 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -7.47 Total: -135.67 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -1.94 Total: -47.17 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -73.17 -1.66 -74.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083418482.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.231 kcal (2) G-P(sol) polarization free energy of solvation -73.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds