Wall clock time and date at job start Fri Apr 10 2020 14:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46660 * 2 1 4 4 C 1.35317 * 126.66173 * 89.99941 * 3 2 1 5 5 C 1.42274 * 103.91944 * 180.24344 * 4 3 2 6 6 C 1.48333 * 126.93893 * 179.75538 * 5 4 3 7 7 O 1.21496 * 119.99871 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00243 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00183 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46762 * 179.97438 * 9 8 6 11 11 O 1.42893 * 112.94856 * 53.41048 * 10 9 8 12 12 C 1.53945 * 113.74330 * 281.67105 * 10 9 8 13 13 N 1.47574 * 86.12001 * 222.05247 * 12 10 9 14 14 C 1.36941 * 134.49513 * 204.64503 * 13 12 10 15 15 H 1.07995 * 120.00352 * 173.48134 * 14 13 12 16 16 C 1.38814 * 119.99764 * 353.47339 * 14 13 12 17 17 N 1.31620 * 120.00005 * 5.07654 * 16 14 13 18 18 Si 1.86795 * 120.00038 * 185.06647 * 16 14 13 19 19 H 1.48498 * 109.47100 * 94.98909 * 18 16 14 20 20 H 1.48504 * 109.47502 * 214.99454 * 18 16 14 21 21 H 1.48504 * 109.47055 * 334.99286 * 18 16 14 22 22 C 1.47584 * 91.01527 * 24.64257 * 13 12 10 23 23 N 1.30981 * 106.12380 * 359.63822 * 5 4 3 24 24 O 1.20908 * 111.43761 * 0.38653 * 23 5 4 25 25 H 1.09002 * 109.47321 * 60.00055 * 1 2 3 26 26 H 1.09005 * 109.46647 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47425 * 299.99881 * 1 2 3 28 28 H 1.09004 * 109.47345 * 240.00498 * 2 1 3 29 29 H 1.08997 * 109.46881 * 119.99799 * 2 1 3 30 30 H 1.08004 * 128.04006 * 359.97438 * 4 3 2 31 31 H 0.97008 * 119.99827 * 359.97438 * 8 6 5 32 32 H 1.08993 * 109.47179 * 299.99541 * 9 8 6 33 33 H 1.09000 * 109.47137 * 59.99983 * 9 8 6 34 34 H 0.96703 * 113.99902 * 309.66389 * 11 10 9 35 35 H 1.09005 * 113.77305 * 336.35348 * 12 10 9 36 36 H 1.09004 * 113.76954 * 107.74941 * 12 10 9 37 37 H 0.96998 * 119.99760 * 179.97438 * 17 16 14 38 38 H 1.09001 * 113.76664 * 221.06013 * 22 13 12 39 39 H 1.08991 * 113.76975 * 89.66290 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3015 2.1827 1.0855 5 6 2.7332 3.4218 0.5355 6 6 3.1529 4.6315 1.2843 7 8 3.1495 4.6255 2.4992 8 7 3.5379 5.7373 0.6170 9 6 3.9528 6.9319 1.3566 10 6 4.3378 8.0351 0.3687 11 8 3.3143 8.3056 -0.5910 12 6 5.7369 7.8545 -0.2477 13 7 5.9023 9.3073 -0.0485 14 6 6.6708 10.2755 -0.6378 15 1 6.5303 11.3127 -0.3720 16 6 7.6307 9.9236 -1.5769 17 7 7.7348 8.6733 -1.9748 18 14 8.7744 11.2246 -2.2760 19 1 10.0432 11.2344 -1.5045 20 1 9.0631 10.9165 -3.6997 21 1 8.1261 12.5571 -2.1795 22 6 4.9067 9.2979 1.0409 23 7 2.6878 3.2777 -0.7656 24 8 2.2985 2.1756 -1.0749 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2062 1.9142 2.1272 31 1 3.5410 5.7420 -0.3531 32 1 3.1297 7.2757 1.9829 33 1 4.8109 6.6909 1.9841 34 1 2.9749 7.5174 -1.0368 35 1 6.4096 7.2484 0.3592 36 1 5.7199 7.5538 -1.2953 37 1 8.4053 8.4276 -2.6312 38 1 4.2269 10.1497 1.0221 39 1 5.3354 9.1159 2.0263 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672132649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:13:53 Heat of formation + Delta-G solvation = 7.580839 kcal Electronic energy + Delta-G solvation = -23289.298584 eV Core-core repulsion = 19622.474958 eV Total energy + Delta-G solvation = -3666.823626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.18678 -41.26032 -40.13319 -36.60731 -35.86345 -35.51155 -34.84848 -34.04540 -31.17939 -30.39480 -28.14369 -26.82482 -25.68316 -24.92318 -23.83342 -23.23575 -21.41388 -20.95302 -19.15042 -18.90307 -18.64216 -18.16598 -17.45470 -17.25579 -16.60741 -16.47944 -15.83752 -15.69318 -15.40717 -15.25157 -14.95394 -14.70826 -14.45606 -14.33771 -13.96587 -13.50360 -13.47870 -13.02090 -12.89754 -12.88061 -12.62193 -12.39181 -12.24978 -11.87252 -11.83616 -11.66873 -11.59450 -11.32455 -11.00695 -10.80871 -10.47623 -10.36593 -8.97155 -7.95831 -5.28377 -0.01138 0.63713 1.43126 1.45311 1.54359 1.66474 1.95152 2.02015 2.43690 2.79601 2.97138 3.22031 3.28782 3.42139 3.56794 3.78892 3.89885 4.07535 4.17985 4.28712 4.37625 4.46541 4.61251 4.67028 4.72591 4.74127 4.89399 4.98511 5.04685 5.09349 5.13070 5.16716 5.24082 5.42715 5.44500 5.87021 6.08773 6.67270 6.78189 6.86856 6.99665 7.55232 8.48788 9.21629 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028027 B = 0.002966 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.806619 B = 9437.384311 C = 9998.819636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.041 4.041 3 C -0.014 4.014 4 C -0.192 4.192 5 C -0.047 4.047 6 C 0.600 3.400 7 O -0.550 6.550 8 N -0.704 5.704 9 C 0.116 3.884 10 C 0.094 3.906 11 O -0.539 6.539 12 C 0.145 3.855 13 N -0.636 5.636 14 C -0.235 4.235 15 H 0.084 0.916 16 C -0.068 4.068 17 N -0.952 5.952 18 Si 0.981 3.019 19 H -0.286 1.286 20 H -0.294 1.294 21 H -0.267 1.267 22 C 0.133 3.867 23 N -0.349 5.349 24 O 0.126 5.874 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.195 0.805 31 H 0.410 0.590 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.381 0.619 35 H 0.028 0.972 36 H 0.041 0.959 37 H 0.249 0.751 38 H 0.061 0.939 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.462 -19.834 5.177 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.078 4.078 3 C -0.077 4.077 4 C -0.214 4.214 5 C -0.205 4.205 6 C 0.385 3.615 7 O -0.427 6.427 8 N -0.356 5.356 9 C -0.008 4.008 10 C 0.051 3.949 11 O -0.345 6.345 12 C 0.019 3.981 13 N -0.362 5.362 14 C -0.363 4.363 15 H 0.102 0.898 16 C -0.261 4.261 17 N -0.601 5.601 18 Si 0.809 3.191 19 H -0.213 1.213 20 H -0.220 1.220 21 H -0.192 1.192 22 C 0.008 3.992 23 N -0.048 5.048 24 O 0.049 5.951 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.126 0.874 29 H 0.140 0.860 30 H 0.212 0.788 31 H 0.246 0.754 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.229 0.771 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.811 -18.148 5.048 23.962 hybrid contribution 0.888 0.002 -0.430 0.986 sum -13.923 -18.146 4.619 23.334 Atomic orbital electron populations 1.21827 0.92801 1.03973 1.02366 1.20447 0.96967 0.83452 1.06980 1.25254 1.00182 0.98174 0.84073 1.22672 1.05359 0.90633 1.02769 1.23441 1.08140 0.98273 0.90638 1.17050 0.76858 0.81421 0.86142 1.90774 1.55161 1.83286 1.13473 1.45747 1.65997 1.12695 1.11164 1.21933 1.01550 0.82944 0.94403 1.23243 0.87431 0.94978 0.89226 1.86562 1.54576 1.36798 1.56598 1.22774 0.91246 0.85578 0.98473 1.46022 1.48025 1.04795 1.37378 1.19395 1.11177 0.88224 1.17481 0.89786 1.25686 1.00921 0.98724 1.00775 1.70007 1.37179 1.17848 1.35068 0.85022 0.78783 0.78483 0.76831 1.21264 1.22029 1.19162 1.22797 0.89386 0.94754 0.92269 1.74215 1.14594 1.00487 1.15550 1.84756 1.59194 1.16863 1.34298 0.92773 0.89147 0.92479 0.87373 0.86034 0.78761 0.75419 0.89017 0.89880 0.77062 0.95428 0.94019 0.94236 0.92086 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 71.98 0.71 -0.09 16 2 C -0.04 -0.23 6.50 29.85 0.19 -0.04 16 3 C -0.01 -0.20 6.73 25.01 0.17 -0.04 16 4 C -0.19 -3.65 10.92 22.60 0.25 -3.40 16 5 C -0.05 -1.22 7.19 42.96 0.31 -0.91 16 6 C 0.60 17.90 7.85 86.93 0.68 18.58 16 7 O -0.55 -18.84 16.95 -3.70 -0.06 -18.90 16 8 N -0.70 -20.17 5.33 -465.51 -2.48 -22.65 16 9 C 0.12 3.52 5.28 86.38 0.46 3.98 16 10 C 0.09 3.49 1.52 -10.13 -0.02 3.47 16 11 O -0.54 -19.95 13.51 -148.98 -2.01 -21.96 16 12 C 0.15 6.95 6.83 86.48 0.59 7.54 16 13 N -0.64 -33.64 3.70 -720.24 -2.66 -36.30 16 14 C -0.23 -13.61 10.70 84.03 0.90 -12.71 16 15 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 16 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 17 N -0.95 -58.68 11.51 21.65 0.25 -58.43 16 18 Si 0.98 46.85 29.56 68.60 2.03 48.88 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 22 C 0.13 5.45 8.34 86.48 0.72 6.17 16 23 N -0.35 -8.82 11.84 -49.52 -0.59 -9.41 16 24 O 0.13 2.57 11.18 71.95 0.80 3.38 16 25 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.09 0.16 8.14 -2.38 -0.02 0.14 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.20 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.41 11.14 7.07 -92.70 -0.66 10.49 16 32 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.08 2.59 8.04 -2.39 -0.02 2.58 16 34 H 0.38 10.99 7.61 -74.06 -0.56 10.43 16 35 H 0.03 1.36 8.03 -2.38 -0.02 1.34 16 36 H 0.04 2.25 7.35 -2.39 -0.02 2.23 16 37 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.08 2.77 8.10 -2.39 -0.02 2.75 16 Total: -1.00 -76.42 339.52 0.58 -75.84 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -0.13 Total: 20.51 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 5.43 Total: 19.03 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -5.48 Total: -126.79 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.27 Total: -37.48 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -76.42 0.58 -75.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672132649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.425 kcal (2) G-P(sol) polarization free energy of solvation -76.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds