Wall clock time and date at job start Fri Apr 10 2020 14:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30988 * 1 3 3 C 1.50704 * 120.00348 * 2 1 4 4 N 1.46499 * 109.46998 * 124.18919 * 3 2 1 5 5 C 1.46502 * 120.00448 * 273.75920 * 4 3 2 6 6 C 1.50699 * 109.47454 * 272.31339 * 5 4 3 7 7 H 1.08002 * 119.99872 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99848 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99688 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00176 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47331 * 89.99863 * 10 8 6 12 12 H 1.48500 * 109.46780 * 209.99947 * 10 8 6 13 13 H 1.48500 * 109.46717 * 329.99794 * 10 8 6 14 14 C 1.34778 * 120.00101 * 93.76395 * 4 3 2 15 15 O 1.21290 * 119.99711 * 3.81214 * 14 4 3 16 16 C 1.50696 * 120.00564 * 183.81106 * 14 4 3 17 17 H 1.09002 * 109.46604 * 31.07765 * 16 14 4 18 18 C 1.53005 * 109.46994 * 271.08207 * 16 14 4 19 19 C 1.52993 * 109.47150 * 151.08133 * 16 14 4 20 20 N 1.46902 * 109.46955 * 185.00431 * 19 16 14 21 21 C 1.47016 * 110.99901 * 46.31553 * 20 19 16 22 22 C 1.53102 * 109.25327 * 182.35145 * 21 20 19 23 23 O 1.43012 * 109.29900 * 303.22031 * 22 21 20 24 24 C 1.43011 * 113.73657 * 58.64261 * 23 22 21 25 25 C 1.47017 * 111.00045 * 170.00012 * 20 19 16 26 26 H 1.08001 * 120.00206 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00251 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00251 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46366 * 4.19538 * 3 2 1 30 30 H 1.08996 * 109.47646 * 244.19465 * 3 2 1 31 31 H 1.09008 * 109.46617 * 32.31385 * 5 4 3 32 32 H 1.08998 * 109.47288 * 152.30510 * 5 4 3 33 33 H 0.96993 * 119.99615 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47094 * 54.61256 * 18 16 14 35 35 H 1.08999 * 109.46692 * 174.60842 * 18 16 14 36 36 H 1.08998 * 109.47110 * 294.60989 * 18 16 14 37 37 H 1.08994 * 109.47468 * 65.00312 * 19 16 14 38 38 H 1.09000 * 109.47179 * 304.99424 * 19 16 14 39 39 H 1.08998 * 109.47253 * 62.44321 * 21 20 19 40 40 H 1.09005 * 109.54590 * 302.30568 * 21 20 19 41 41 H 1.09004 * 109.50522 * 183.25704 * 22 21 20 42 42 H 1.09001 * 109.50517 * 63.17909 * 22 21 20 43 43 H 1.08998 * 109.50611 * 61.27141 * 24 23 22 44 44 H 1.09005 * 109.50709 * 181.35587 * 24 23 22 45 45 H 1.08997 * 109.50988 * 57.67132 * 25 20 19 46 46 H 1.08994 * 109.54154 * 297.56047 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9798 1.3398 1.1425 5 6 2.5054 1.8052 2.4482 6 6 2.6620 3.3014 2.5355 7 1 3.0741 3.8508 1.7020 8 6 2.2792 3.9690 3.6796 9 7 2.4163 5.2748 3.7560 10 14 1.5671 3.0187 5.1215 11 1 2.6651 2.6019 6.0304 12 1 0.6133 3.8834 5.8616 13 1 0.8569 1.8153 4.6188 14 6 4.2593 0.9438 0.9925 15 8 4.6708 0.6244 -0.1029 16 6 5.1788 0.8978 2.1856 17 1 4.6010 0.6678 3.0808 18 6 5.8628 2.2559 2.3549 19 6 6.2391 -0.1840 1.9709 20 7 7.0610 -0.3112 3.1818 21 6 6.2200 -0.3590 4.3867 22 6 7.1165 -0.4323 5.6256 23 8 7.9772 -1.5695 5.5196 24 6 8.8108 -1.5542 4.3577 25 6 7.9316 -1.4935 3.1059 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3575 2.1322 0.0752 30 1 2.6326 1.3961 -0.9251 31 1 1.4543 1.5422 2.5676 32 1 3.0901 1.3319 3.2370 33 1 2.1467 5.7444 4.5607 34 1 5.1066 3.0390 2.4121 35 1 6.4533 2.2535 3.2711 36 1 6.5156 2.4428 1.5023 37 1 6.8735 0.0911 1.1284 38 1 5.7502 -1.1356 1.7621 39 1 5.5797 -1.2402 4.3482 40 1 5.6029 0.5382 4.4365 41 1 6.4975 -0.5261 6.5178 42 1 7.7180 0.4742 5.6937 43 1 9.4616 -0.6803 4.3881 44 1 9.4178 -2.4593 4.3333 45 1 8.5633 -1.4240 2.2204 46 1 7.3198 -2.3936 3.0468 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293629069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:13:41 Heat of formation + Delta-G solvation = -49.079873 kcal Electronic energy + Delta-G solvation = -25502.329101 eV Core-core repulsion = 22006.996010 eV Total energy + Delta-G solvation = -3495.333092 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01039 -39.13686 -36.34709 -35.52607 -33.70491 -32.51264 -32.09792 -31.09072 -28.25513 -27.83235 -26.01548 -24.61910 -24.09976 -22.73433 -21.74665 -20.30060 -19.60306 -18.02208 -17.16396 -17.00246 -16.15881 -15.99157 -15.80844 -15.12997 -15.09143 -14.92280 -14.64549 -14.29065 -14.11075 -13.55932 -13.38800 -12.95473 -12.80892 -12.53534 -12.30387 -12.15167 -11.88945 -11.56001 -11.50438 -11.42042 -11.35711 -11.17399 -10.95694 -10.82927 -10.66263 -10.59972 -10.33504 -10.18614 -9.68520 -9.66077 -9.33124 -8.92607 -8.73888 -8.32857 -7.83853 -6.25871 -4.26782 2.44400 3.12518 3.21578 3.23316 3.27460 3.61990 3.81276 4.05899 4.22206 4.81138 4.93296 4.97783 5.03492 5.09688 5.15068 5.22550 5.28852 5.31856 5.41083 5.45085 5.50500 5.56686 5.67466 5.73537 5.85440 5.90597 5.94010 6.06421 6.10513 6.13670 6.27380 6.38546 6.51413 6.56758 6.64410 6.81953 6.92161 6.93242 6.98908 7.05438 7.11583 7.29923 7.39949 8.06612 8.36276 8.77199 8.86595 9.33251 10.86398 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.005642 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.657408 B = 4961.234634 C = 6285.277690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C 0.141 3.859 4 N -0.585 5.585 5 C 0.208 3.792 6 C -0.537 4.537 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.888 5.888 10 Si 0.866 3.134 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.265 1.265 14 C 0.525 3.475 15 O -0.571 6.571 16 C -0.108 4.108 17 H 0.094 0.906 18 C -0.137 4.137 19 C 0.076 3.924 20 N -0.531 5.531 21 C 0.006 3.994 22 C 0.064 3.936 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.018 3.982 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.267 0.733 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.032 0.968 39 H 0.041 0.959 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.862 -11.847 0.816 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.177 4.177 3 C 0.018 3.982 4 N -0.315 5.315 5 C 0.086 3.914 6 C -0.575 4.575 7 H 0.098 0.902 8 C -0.125 4.125 9 N -0.525 5.525 10 Si 0.692 3.308 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.189 1.189 14 C 0.313 3.687 15 O -0.451 6.451 16 C -0.130 4.130 17 H 0.112 0.888 18 C -0.195 4.195 19 C -0.051 4.051 20 N -0.256 5.256 21 C -0.122 4.122 22 C -0.013 4.013 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.110 4.110 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.050 0.950 39 H 0.059 0.941 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.112 0.888 45 H 0.104 0.896 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.334 -11.557 0.553 13.190 hybrid contribution -1.134 -0.848 0.625 1.548 sum 5.200 -12.405 1.178 13.502 Atomic orbital electron populations 1.23802 0.95789 1.01666 1.01642 1.23385 0.96112 0.99242 0.98931 1.20444 0.92608 0.94691 0.90453 1.47888 1.09150 1.62532 1.11893 1.19864 0.95421 0.96171 0.79894 1.21308 1.43516 0.89822 1.02892 0.90177 1.24843 0.94878 0.94683 0.98096 1.69883 1.46858 1.07231 1.28544 0.87004 0.79926 0.80549 0.83289 1.19712 1.20844 1.18916 1.20420 0.82298 0.76108 0.89888 1.90592 1.75731 1.51307 1.27517 1.21374 0.95613 0.98401 0.97566 0.88802 1.21741 1.01151 0.95037 1.01546 1.21979 0.94364 0.96803 0.91996 1.62240 1.22079 1.38804 1.02481 1.22978 0.95963 1.02547 0.90757 1.22692 0.92277 0.89044 0.97263 1.87955 1.54556 1.44523 1.43753 1.22636 0.92231 1.02248 0.84097 1.22764 0.96836 0.91841 0.99565 0.88883 0.88275 0.87974 0.89695 0.89621 0.94937 0.95221 0.92320 0.89018 0.91837 0.93195 0.89459 0.94967 0.94087 0.88253 0.88504 0.92043 0.92244 0.88759 0.89641 0.94156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 14.32 29.02 0.42 -2.21 16 2 C -0.16 -2.48 9.85 -36.02 -0.35 -2.83 16 3 C 0.14 2.55 5.93 -5.19 -0.03 2.52 16 4 N -0.59 -11.77 2.44 -176.43 -0.43 -12.20 16 5 C 0.21 4.45 4.15 -5.19 -0.02 4.43 16 6 C -0.54 -13.50 8.10 -34.44 -0.28 -13.78 16 7 H 0.08 2.27 8.02 -52.49 -0.42 1.85 16 8 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.89 -24.94 13.96 55.43 0.77 -24.17 16 10 Si 0.87 19.17 27.47 -169.99 -4.67 14.50 16 11 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 14 C 0.52 10.51 6.74 -10.99 -0.07 10.43 16 15 O -0.57 -12.45 15.76 5.55 0.09 -12.36 16 16 C -0.11 -1.89 1.54 -91.77 -0.14 -2.03 16 17 H 0.09 1.63 3.77 -51.93 -0.20 1.43 16 18 C -0.14 -2.47 8.84 37.16 0.33 -2.14 16 19 C 0.08 1.18 4.16 -3.83 -0.02 1.16 16 20 N -0.53 -7.26 4.43 -234.31 -1.04 -8.30 16 21 C 0.01 0.07 4.80 -3.71 -0.02 0.06 16 22 C 0.06 0.78 7.01 37.21 0.26 1.04 16 23 O -0.39 -5.00 10.83 -35.23 -0.38 -5.38 16 24 C 0.06 0.69 7.01 37.21 0.26 0.95 16 25 C 0.02 0.21 5.63 -3.71 -0.02 0.19 16 26 H 0.09 1.10 8.06 -52.49 -0.42 0.67 16 27 H 0.10 1.32 7.84 -52.49 -0.41 0.91 16 28 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.08 1.54 7.75 -51.93 -0.40 1.14 16 30 H 0.09 1.58 7.27 -51.93 -0.38 1.21 16 31 H 0.03 0.70 7.15 -51.92 -0.37 0.33 16 32 H 0.03 0.62 5.09 -51.93 -0.26 0.35 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.09 1.95 6.12 -51.93 -0.32 1.63 16 35 H 0.06 1.05 7.36 -51.93 -0.38 0.67 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.41 8.02 -51.93 -0.42 0.99 16 38 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 1.42 5.42 -51.93 -0.28 1.14 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 360.61 15.07 5.43 5.43 Total: -1.00 -28.81 360.61 -7.67 -36.47 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.66 Total: 6.28 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 0.21 Total: -0.27 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.69 Total: -44.67 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.29 Total: -17.74 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.67 Total: 14.50 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.81 -7.67 -36.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293629069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.606 kcal (2) G-P(sol) polarization free energy of solvation -28.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds