Wall clock time and date at job start Fri Apr 10 2020 14:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30988 * 1 3 3 C 1.50704 * 120.00348 * 2 1 4 4 N 1.46499 * 109.46998 * 124.18919 * 3 2 1 5 5 C 1.46502 * 120.00448 * 273.75920 * 4 3 2 6 6 C 1.50699 * 109.47454 * 272.31339 * 5 4 3 7 7 H 1.08002 * 119.99872 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99848 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99688 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00176 * 0.02562 * 8 6 5 11 11 H 1.48497 * 109.47331 * 89.99863 * 10 8 6 12 12 H 1.48500 * 109.46780 * 209.99947 * 10 8 6 13 13 H 1.48500 * 109.46717 * 329.99794 * 10 8 6 14 14 C 1.34778 * 120.00101 * 93.76395 * 4 3 2 15 15 O 1.21290 * 119.99711 * 3.81214 * 14 4 3 16 16 C 1.50696 * 120.00564 * 183.81106 * 14 4 3 17 17 H 1.09002 * 109.46604 * 31.07765 * 16 14 4 18 18 C 1.53005 * 109.46994 * 271.08207 * 16 14 4 19 19 C 1.52993 * 109.47150 * 151.08133 * 16 14 4 20 20 N 1.46902 * 109.46955 * 185.00431 * 19 16 14 21 21 C 1.47016 * 110.99901 * 46.31553 * 20 19 16 22 22 C 1.53102 * 109.25327 * 182.35145 * 21 20 19 23 23 O 1.43012 * 109.29900 * 303.22031 * 22 21 20 24 24 C 1.43011 * 113.73657 * 58.64261 * 23 22 21 25 25 C 1.47017 * 111.00045 * 170.00012 * 20 19 16 26 26 H 1.08001 * 120.00206 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00251 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.00251 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46366 * 4.19538 * 3 2 1 30 30 H 1.08996 * 109.47646 * 244.19465 * 3 2 1 31 31 H 1.09008 * 109.46617 * 32.31385 * 5 4 3 32 32 H 1.08998 * 109.47288 * 152.30510 * 5 4 3 33 33 H 0.96993 * 119.99615 * 179.97438 * 9 8 6 34 34 H 1.09001 * 109.47094 * 54.61256 * 18 16 14 35 35 H 1.08999 * 109.46692 * 174.60842 * 18 16 14 36 36 H 1.08998 * 109.47110 * 294.60989 * 18 16 14 37 37 H 1.08994 * 109.47468 * 65.00312 * 19 16 14 38 38 H 1.09000 * 109.47179 * 304.99424 * 19 16 14 39 39 H 1.08998 * 109.47253 * 62.44321 * 21 20 19 40 40 H 1.09005 * 109.54590 * 302.30568 * 21 20 19 41 41 H 1.09004 * 109.50522 * 183.25704 * 22 21 20 42 42 H 1.09001 * 109.50517 * 63.17909 * 22 21 20 43 43 H 1.08998 * 109.50611 * 61.27141 * 24 23 22 44 44 H 1.09005 * 109.50709 * 181.35587 * 24 23 22 45 45 H 1.08997 * 109.50988 * 57.67132 * 25 20 19 46 46 H 1.08994 * 109.54154 * 297.56047 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9798 1.3398 1.1425 5 6 2.5054 1.8052 2.4482 6 6 2.6620 3.3014 2.5355 7 1 3.0741 3.8508 1.7020 8 6 2.2792 3.9690 3.6796 9 7 2.4163 5.2748 3.7560 10 14 1.5671 3.0187 5.1215 11 1 2.6651 2.6019 6.0304 12 1 0.6133 3.8834 5.8616 13 1 0.8569 1.8153 4.6188 14 6 4.2593 0.9438 0.9925 15 8 4.6708 0.6244 -0.1029 16 6 5.1788 0.8978 2.1856 17 1 4.6010 0.6678 3.0808 18 6 5.8628 2.2559 2.3549 19 6 6.2391 -0.1840 1.9709 20 7 7.0610 -0.3112 3.1818 21 6 6.2200 -0.3590 4.3867 22 6 7.1165 -0.4323 5.6256 23 8 7.9772 -1.5695 5.5196 24 6 8.8108 -1.5542 4.3577 25 6 7.9316 -1.4935 3.1059 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3575 2.1322 0.0752 30 1 2.6326 1.3961 -0.9251 31 1 1.4543 1.5422 2.5676 32 1 3.0901 1.3319 3.2370 33 1 2.1467 5.7444 4.5607 34 1 5.1066 3.0390 2.4121 35 1 6.4533 2.2535 3.2711 36 1 6.5156 2.4428 1.5023 37 1 6.8735 0.0911 1.1284 38 1 5.7502 -1.1356 1.7621 39 1 5.5797 -1.2402 4.3482 40 1 5.6029 0.5382 4.4365 41 1 6.4975 -0.5261 6.5178 42 1 7.7180 0.4742 5.6937 43 1 9.4616 -0.6803 4.3881 44 1 9.4178 -2.4593 4.3333 45 1 8.5633 -1.4240 2.2204 46 1 7.3198 -2.3936 3.0468 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293629069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:13:40 Heat of formation + Delta-G solvation = -67.833522 kcal Electronic energy + Delta-G solvation = -25503.142321 eV Core-core repulsion = 22006.996010 eV Total energy + Delta-G solvation = -3496.146311 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.37890 -40.33626 -37.55995 -37.04762 -35.21926 -34.21243 -33.48338 -32.05254 -30.02639 -29.00289 -27.50649 -25.87112 -25.06082 -24.54494 -23.06198 -21.35390 -20.83961 -19.60207 -18.96633 -18.50448 -17.44831 -17.17168 -16.96785 -16.52324 -16.10600 -16.07071 -15.97153 -15.83192 -15.40681 -14.98650 -14.62358 -14.46700 -14.33272 -14.07843 -13.64050 -13.44390 -13.23886 -13.09949 -12.94126 -12.74362 -12.60560 -12.49223 -12.33784 -12.29214 -12.13413 -11.95977 -11.68842 -11.62196 -11.41790 -10.81696 -10.71718 -10.63785 -10.28740 -9.50817 -9.40365 -8.26895 -6.32834 1.23819 1.40025 1.43064 1.51068 1.66784 2.29297 2.35785 2.77340 2.97912 3.06394 3.67461 3.67799 3.87778 3.97480 4.04464 4.06631 4.14003 4.19414 4.27198 4.30256 4.34057 4.52446 4.62105 4.66471 4.71448 4.73843 4.77590 4.78964 4.82145 4.85659 4.90301 5.01793 5.02071 5.06497 5.11816 5.44564 5.47105 5.55184 5.64472 5.85764 5.86745 5.95687 6.18273 6.19567 6.58271 6.71274 7.20971 7.33608 8.88961 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.005642 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.657408 B = 4961.234634 C = 6285.277690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.138 3.862 4 N -0.591 5.591 5 C 0.218 3.782 6 C -0.530 4.530 7 H 0.032 0.968 8 C 0.025 3.975 9 N -0.939 5.939 10 Si 0.930 3.070 11 H -0.256 1.256 12 H -0.288 1.288 13 H -0.243 1.243 14 C 0.518 3.482 15 O -0.592 6.592 16 C -0.102 4.102 17 H 0.099 0.901 18 C -0.125 4.125 19 C 0.089 3.911 20 N -0.535 5.535 21 C 0.005 3.995 22 C 0.066 3.934 23 O -0.403 6.403 24 C 0.064 3.936 25 C 0.017 3.983 26 H 0.121 0.879 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.268 0.732 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.030 0.970 39 H 0.039 0.961 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.119 0.881 45 H 0.097 0.903 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.587 -14.325 2.209 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.198 4.198 3 C 0.016 3.984 4 N -0.319 5.319 5 C 0.096 3.904 6 C -0.568 4.568 7 H 0.051 0.949 8 C -0.174 4.174 9 N -0.578 5.578 10 Si 0.752 3.248 11 H -0.180 1.180 12 H -0.213 1.213 13 H -0.166 1.166 14 C 0.307 3.693 15 O -0.474 6.474 16 C -0.123 4.123 17 H 0.117 0.883 18 C -0.182 4.182 19 C -0.039 4.039 20 N -0.261 5.261 21 C -0.123 4.123 22 C -0.011 4.011 23 O -0.321 6.321 24 C -0.012 4.012 25 C -0.111 4.111 26 H 0.139 0.861 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.137 0.863 45 H 0.116 0.884 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.062 -14.058 1.929 15.431 hybrid contribution -1.042 -0.018 0.071 1.044 sum 5.021 -14.076 2.000 15.078 Atomic orbital electron populations 1.24058 0.94981 1.03162 0.97971 1.23144 0.96714 0.97695 1.02254 1.20502 0.92305 0.96248 0.89345 1.47980 1.09716 1.62246 1.12006 1.19677 0.96084 0.93592 0.81062 1.21350 1.42460 0.91653 1.01359 0.94925 1.25668 0.95242 0.95382 1.01099 1.70041 1.48811 1.09358 1.29614 0.85979 0.79570 0.79621 0.79599 1.17989 1.21346 1.16609 1.20891 0.82446 0.75558 0.90390 1.90572 1.75997 1.52313 1.28537 1.21344 0.95768 0.98663 0.96517 0.88281 1.21574 1.00129 0.94287 1.02239 1.21768 0.93709 0.95714 0.92730 1.62251 1.21812 1.40228 1.01780 1.22986 0.96199 1.01906 0.91226 1.22730 0.92237 0.89051 0.97068 1.87942 1.54832 1.44762 1.44605 1.22796 0.91881 1.03711 0.82825 1.22869 0.96669 0.90720 1.00817 0.86098 0.87918 0.87888 0.90356 0.90837 0.94107 0.93590 0.92329 0.92575 0.90237 0.93430 0.90247 0.95137 0.94262 0.89271 0.87038 0.91923 0.91910 0.86307 0.88426 0.94365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 14.32 67.79 0.97 -3.10 16 2 C -0.18 -5.40 9.85 25.66 0.25 -5.15 16 3 C 0.14 5.06 5.93 85.63 0.51 5.57 16 4 N -0.59 -23.88 2.44 -830.48 -2.03 -25.91 16 5 C 0.22 9.18 4.15 85.63 0.36 9.53 16 6 C -0.53 -27.23 8.10 25.60 0.21 -27.02 16 7 H 0.03 1.95 8.02 -2.91 -0.02 1.93 16 8 C 0.03 1.33 5.47 84.65 0.46 1.79 16 9 N -0.94 -54.20 13.96 21.45 0.30 -53.90 16 10 Si 0.93 38.50 27.47 68.60 1.88 40.38 16 11 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 12 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 13 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 14 C 0.52 20.91 6.74 87.66 0.59 21.50 16 15 O -0.59 -26.17 15.76 -3.06 -0.05 -26.22 16 16 C -0.10 -3.52 1.54 -11.54 -0.02 -3.53 16 17 H 0.10 3.32 3.77 -2.39 -0.01 3.31 16 18 C -0.12 -4.54 8.84 71.98 0.64 -3.91 16 19 C 0.09 2.66 4.16 86.30 0.36 3.02 16 20 N -0.54 -13.78 4.43 -895.22 -3.96 -17.75 16 21 C 0.00 0.12 4.80 86.32 0.41 0.53 16 22 C 0.07 1.45 7.01 72.02 0.50 1.95 16 23 O -0.40 -9.33 10.83 -148.98 -1.61 -10.94 16 24 C 0.06 1.20 7.01 72.01 0.50 1.71 16 25 C 0.02 0.36 5.63 86.31 0.49 0.84 16 26 H 0.12 2.37 8.06 -2.91 -0.02 2.34 16 27 H 0.10 2.49 7.84 -2.91 -0.02 2.47 16 28 H 0.10 3.10 8.06 -2.91 -0.02 3.08 16 29 H 0.08 2.90 7.75 -2.39 -0.02 2.88 16 30 H 0.07 2.81 7.27 -2.39 -0.02 2.80 16 31 H 0.04 1.68 7.15 -2.38 -0.02 1.66 16 32 H 0.05 1.82 5.09 -2.39 -0.01 1.81 16 33 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.06 2.46 6.12 -2.39 -0.01 2.45 16 35 H 0.08 2.60 7.36 -2.39 -0.02 2.58 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 2.51 8.02 -2.39 -0.02 2.49 16 38 H 0.03 0.92 8.08 -2.39 -0.02 0.91 16 39 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 2.39 5.42 -2.38 -0.01 2.38 16 41 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -63.17 360.61 1.66 -61.52 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: 0.89 Total: 29.09 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 6.23 Total: 3.74 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -5.69 Total: -97.56 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -1.66 Total: -37.16 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 1.88 Total: 40.38 kcal Total: -63.17 1.66 -61.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293629069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.317 kcal (2) G-P(sol) polarization free energy of solvation -63.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds