Wall clock time and date at job start Fri Apr 10 2020 14:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46922 * 2 1 4 4 O 1.42906 * 109.47256 * 119.99379 * 2 1 3 5 5 C 1.42896 * 114.00026 * 270.00383 * 4 2 1 6 6 C 1.53008 * 109.47080 * 180.02562 * 5 4 2 7 7 C 1.53000 * 117.49703 * 243.74702 * 6 5 4 8 8 C 1.52999 * 117.49830 * 175.08502 * 6 5 4 9 9 C 1.50694 * 109.47183 * 239.99934 * 2 1 3 10 10 O 1.21285 * 119.99691 * 244.99305 * 9 2 1 11 11 N 1.34771 * 120.00219 * 64.99915 * 9 2 1 12 12 C 1.47086 * 120.88070 * 180.02562 * 11 9 2 13 13 C 1.53246 * 108.51814 * 231.16009 * 12 11 9 14 14 N 1.46902 * 109.33711 * 306.16785 * 13 12 11 15 15 C 1.46902 * 110.99497 * 187.25382 * 14 13 12 16 16 C 1.50699 * 109.47117 * 65.70000 * 15 14 13 17 17 H 1.08000 * 119.99735 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00035 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99471 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99932 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47198 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46850 * 120.00369 * 20 18 16 23 23 H 1.48497 * 109.47006 * 240.00018 * 20 18 16 24 24 C 1.46905 * 111.26950 * 63.11028 * 14 13 12 25 25 C 1.47077 * 120.88322 * 359.97189 * 11 9 2 26 26 H 1.08995 * 109.47592 * 60.00202 * 1 2 3 27 27 H 1.09002 * 109.46705 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47423 * 300.00256 * 1 2 3 29 29 H 1.09006 * 109.47109 * 299.99817 * 5 4 2 30 30 H 1.08997 * 109.47627 * 59.99862 * 5 4 2 31 31 H 1.09004 * 115.54442 * 29.41581 * 6 5 4 32 32 H 1.08999 * 117.49657 * 0.02562 * 7 6 5 33 33 H 1.09000 * 117.49333 * 145.01729 * 7 6 5 34 34 H 1.08993 * 117.49762 * 214.97896 * 8 6 5 35 35 H 1.09000 * 117.50096 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.62590 * 350.86768 * 12 11 9 37 37 H 1.09001 * 109.62973 * 111.45087 * 12 11 9 38 38 H 1.08998 * 109.49282 * 66.12711 * 13 12 11 39 39 H 1.09001 * 109.48895 * 186.20865 * 13 12 11 40 40 H 1.09008 * 109.46656 * 185.70064 * 15 14 13 41 41 H 1.09002 * 109.47174 * 305.69787 * 15 14 13 42 42 H 0.97003 * 119.99505 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.49314 * 176.93241 * 24 14 13 44 44 H 1.09000 * 109.49217 * 56.84795 * 24 14 13 45 45 H 1.08997 * 109.63136 * 248.55193 * 25 11 9 46 46 H 1.09010 * 109.62363 * 9.13571 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 2.2000 0.1831 2.2941 6 6 2.7091 -0.6403 3.4790 7 6 1.8124 -0.7279 4.7156 8 6 3.0891 0.1160 4.7535 9 6 2.0323 -0.7104 -1.2304 10 8 2.6531 -1.7466 -1.1213 11 7 1.7919 -0.1942 -2.4519 12 6 2.2727 -0.8717 -3.6657 13 6 3.0316 0.1466 -4.5233 14 7 2.1748 1.3157 -4.7625 15 6 2.7984 2.2381 -5.7208 16 6 2.8939 1.5724 -7.0694 17 1 2.5275 0.5651 -7.2015 18 6 3.4480 2.2498 -8.1349 19 7 3.8936 3.4766 -7.9740 20 14 3.5656 1.4249 -9.8067 21 1 2.9974 0.0554 -9.7240 22 1 2.8028 2.2174 -10.8044 23 1 4.9895 1.3464 -10.2208 24 6 1.8486 2.0033 -3.5059 25 6 1.0408 1.0608 -2.6067 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.9319 0.9516 2.0450 30 1 1.2538 0.6549 2.5588 31 1 3.2985 -1.5203 3.2212 32 1 0.8597 -0.1992 4.6848 33 1 1.8122 -1.6654 5.2716 34 1 3.9281 -0.2667 5.3346 35 1 2.9760 1.2001 4.7482 36 1 2.9404 -1.6877 -3.3894 37 1 1.4242 -1.2632 -4.2270 38 1 3.9361 0.4592 -4.0017 39 1 3.2999 -0.3088 -5.4766 40 1 2.1927 3.1407 -5.8031 41 1 3.7977 2.5014 -5.3740 42 1 4.2838 3.9530 -8.7235 43 1 1.2591 2.8945 -3.7214 44 1 2.7697 2.2900 -2.9985 45 1 0.0742 0.8548 -3.0663 46 1 0.8942 1.5225 -1.6302 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602211042.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:16:02 Heat of formation + Delta-G solvation = -42.330596 kcal Electronic energy + Delta-G solvation = -24344.751086 eV Core-core repulsion = 20849.710665 eV Total energy + Delta-G solvation = -3495.040421 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.32013 -38.62748 -37.53007 -36.61780 -34.55738 -32.57677 -31.91709 -30.42005 -28.25393 -27.37330 -25.74650 -24.21208 -23.12895 -22.72277 -21.93616 -21.09498 -20.50706 -18.82953 -17.62726 -16.79729 -16.40899 -16.17207 -15.62135 -15.42226 -14.82713 -14.72455 -14.52598 -14.48150 -14.04792 -13.73233 -13.66525 -13.24446 -13.06009 -12.64627 -12.47450 -12.18059 -11.97032 -11.85701 -11.78837 -11.32580 -11.25581 -11.17266 -10.87708 -10.80820 -10.75687 -10.65931 -10.60457 -10.53649 -9.93063 -9.87070 -9.42849 -9.26081 -8.53655 -8.45546 -7.37441 -6.08837 -4.10556 2.67664 2.70801 3.28014 3.35789 3.38148 3.40404 3.65931 4.34914 4.37671 4.49749 4.54055 4.63399 4.71044 4.74225 4.85366 4.97078 5.13265 5.16192 5.24241 5.27821 5.29228 5.32479 5.37424 5.40533 5.50622 5.53310 5.62233 5.74903 5.76892 5.84820 5.88145 5.95509 5.98267 6.14208 6.36048 6.50534 6.67474 6.92215 7.17930 7.24112 7.50819 7.71996 7.97111 8.08137 8.26629 8.44217 8.97015 9.54266 11.02051 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.034775 B = 0.002668 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.975041 B =10490.928889 C =10626.106715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.073 3.927 3 H 0.084 0.916 4 O -0.354 6.354 5 C 0.090 3.910 6 C -0.152 4.152 7 C -0.177 4.177 8 C -0.174 4.174 9 C 0.515 3.485 10 O -0.528 6.528 11 N -0.606 5.606 12 C 0.116 3.884 13 C 0.051 3.949 14 N -0.535 5.535 15 C 0.194 3.806 16 C -0.509 4.509 17 H 0.065 0.935 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.038 3.962 25 C 0.107 3.893 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.025 0.975 39 H 0.098 0.902 40 H 0.032 0.968 41 H -0.009 1.009 42 H 0.261 0.739 43 H 0.082 0.918 44 H 0.027 0.973 45 H 0.079 0.921 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 -3.583 21.466 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.011 3.989 3 H 0.102 0.898 4 O -0.272 6.272 5 C 0.014 3.986 6 C -0.170 4.170 7 C -0.214 4.214 8 C -0.211 4.211 9 C 0.301 3.699 10 O -0.404 6.404 11 N -0.341 5.341 12 C -0.006 4.006 13 C -0.078 4.078 14 N -0.261 5.261 15 C 0.069 3.931 16 C -0.548 4.548 17 H 0.083 0.917 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.091 4.091 25 C -0.016 4.016 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.116 0.884 40 H 0.050 0.950 41 H 0.009 0.991 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.045 0.955 45 H 0.098 0.902 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.529 -4.364 21.230 22.636 hybrid contribution 0.818 0.467 -0.643 1.141 sum -5.711 -3.897 20.587 21.717 Atomic orbital electron populations 1.22397 0.93524 1.04080 1.03442 1.21854 0.95165 0.96184 0.85654 0.89787 1.88036 1.86530 1.33937 1.18675 1.22114 0.98999 0.92071 0.85451 1.22123 1.04066 1.02528 0.88281 1.23082 0.94917 1.02144 1.01291 1.22991 0.99324 0.98863 0.99945 1.20271 0.80018 0.85549 0.84030 1.90691 1.40166 1.23503 1.86017 1.48157 1.55354 1.24909 1.05664 1.21873 0.99341 0.95582 0.83760 1.22354 0.93296 0.92396 0.99758 1.62097 1.45979 1.09178 1.08800 1.19735 0.92410 0.91166 0.89816 1.21176 1.39045 1.01004 0.93531 0.91706 1.24997 0.95456 0.94922 0.99245 1.69965 1.41092 1.11032 1.31651 0.86432 0.77615 0.79620 0.83713 1.19593 1.21001 1.21096 1.22426 0.98462 0.96528 0.91701 1.22112 0.95782 0.84038 0.99667 0.90061 0.91024 0.91371 0.92733 0.92998 0.86612 0.88680 0.88590 0.88347 0.88636 0.89343 0.90786 0.95710 0.88370 0.95020 0.99096 0.92921 0.89926 0.95496 0.90238 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.12 37.16 0.34 -1.30 16 2 C 0.07 0.87 2.30 -27.89 -0.06 0.80 16 3 H 0.08 0.84 7.05 -51.93 -0.37 0.48 16 4 O -0.35 -4.71 9.53 -55.09 -0.52 -5.23 16 5 C 0.09 0.88 6.03 37.16 0.22 1.10 16 6 C -0.15 -1.38 6.05 -90.62 -0.55 -1.93 16 7 C -0.18 -1.29 10.18 -26.69 -0.27 -1.57 16 8 C -0.17 -1.21 10.26 -26.69 -0.27 -1.49 16 9 C 0.51 8.08 7.13 -10.99 -0.08 8.01 16 10 O -0.53 -10.38 15.96 -14.31 -0.23 -10.61 16 11 N -0.61 -9.10 3.01 -172.43 -0.52 -9.62 16 12 C 0.12 1.91 6.60 -3.59 -0.02 1.89 16 13 C 0.05 0.97 5.46 -3.70 -0.02 0.95 16 14 N -0.54 -10.86 4.62 -235.72 -1.09 -11.95 16 15 C 0.19 4.84 4.72 -4.98 -0.02 4.81 16 16 C -0.51 -13.82 8.41 -34.44 -0.29 -14.11 16 17 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 18 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -26.14 13.29 55.43 0.74 -25.41 16 20 Si 0.90 21.24 29.54 -169.99 -5.02 16.21 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.04 0.62 5.62 -3.68 -0.02 0.60 16 25 C 0.11 1.36 5.07 -3.58 -0.02 1.34 16 26 H 0.08 0.67 5.45 -51.93 -0.28 0.38 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 29 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.05 0.41 7.61 -51.93 -0.39 0.01 16 31 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.48 7.06 -51.93 -0.37 1.11 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 40 H 0.03 0.84 7.97 -51.92 -0.41 0.42 16 41 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.08 1.26 7.99 -51.93 -0.41 0.84 16 44 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 46 H 0.08 0.77 4.85 -51.92 -0.25 0.52 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -32.50 365.11 -10.13 -42.63 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.82 Total: -2.07 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.17 Total: 0.55 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: -0.87 Total: -46.98 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.75 Total: -15.84 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.50 -10.13 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602211042.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.299 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds