Wall clock time and date at job start Fri Apr 10 2020 14:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00054 * 2 1 4 4 H 1.09004 * 109.47082 * 329.99433 * 3 2 1 5 5 C 1.52996 * 109.47470 * 89.99850 * 3 2 1 6 6 C 1.50697 * 109.47181 * 210.00435 * 3 2 1 7 7 O 1.21284 * 119.99588 * 344.62157 * 6 3 2 8 8 N 1.34777 * 120.00330 * 164.63078 * 6 3 2 9 9 C 1.47479 * 125.65880 * 3.86424 * 8 6 3 10 10 C 1.55285 * 104.77411 * 155.88903 * 9 8 6 11 11 C 1.54502 * 101.41539 * 36.68252 * 10 9 8 12 12 C 1.47191 * 125.66033 * 184.17345 * 8 6 3 13 13 C 1.52240 * 110.24608 * 83.58979 * 11 10 9 14 14 C 1.53169 * 109.65233 * 62.92269 * 13 11 10 15 15 C 1.53193 * 109.27499 * 60.17170 * 14 13 11 16 16 N 1.46924 * 108.92454 * 304.77608 * 15 14 13 17 17 C 1.36942 * 120.70161 * 234.13782 * 16 15 14 18 18 H 1.07997 * 119.99890 * 144.02403 * 17 16 15 19 19 C 1.38808 * 119.99842 * 324.02125 * 17 16 15 20 20 N 1.31622 * 119.99832 * 169.79960 * 19 17 16 21 21 Si 1.86802 * 120.00250 * 349.80319 * 19 17 16 22 22 H 1.48497 * 109.47147 * 85.50283 * 21 19 17 23 23 H 1.48504 * 109.47267 * 205.50625 * 21 19 17 24 24 H 1.48499 * 109.47001 * 325.50174 * 21 19 17 25 25 C 1.47081 * 118.60094 * 54.16585 * 16 15 14 26 26 H 1.08994 * 109.47377 * 60.00080 * 1 2 3 27 27 H 1.09001 * 109.47082 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47089 * 300.00137 * 1 2 3 29 29 H 1.08994 * 109.47473 * 54.68307 * 5 3 2 30 30 H 1.09002 * 109.47307 * 174.68575 * 5 3 2 31 31 H 1.08999 * 109.46915 * 294.68092 * 5 3 2 32 32 H 1.08997 * 110.35528 * 274.84777 * 9 8 6 33 33 H 1.08994 * 110.35682 * 37.14126 * 9 8 6 34 34 H 1.09007 * 111.22784 * 278.58900 * 10 9 8 35 35 H 1.09000 * 110.90177 * 154.64045 * 10 9 8 36 36 H 1.08995 * 109.91387 * 300.87849 * 12 8 6 37 37 H 1.09002 * 109.91068 * 62.14589 * 12 8 6 38 38 H 1.08999 * 109.44152 * 182.97237 * 13 11 10 39 39 H 1.08993 * 109.44586 * 302.90251 * 13 11 10 40 40 H 1.08992 * 109.50633 * 180.11666 * 14 13 11 41 41 H 1.09002 * 109.49899 * 300.19718 * 14 13 11 42 42 H 1.09006 * 109.55591 * 64.61089 * 15 14 13 43 43 H 1.09001 * 109.55777 * 184.82853 * 15 14 13 44 44 H 0.97007 * 119.99374 * 180.02562 * 20 19 17 45 45 H 1.08999 * 109.57964 * 187.74432 * 25 16 15 46 46 H 1.08997 * 109.58100 * 67.34879 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3386 1.2639 -0.7105 7 8 3.8790 0.1993 -0.9240 8 7 3.9261 2.4097 -1.1085 9 6 3.4231 3.7707 -0.8444 10 6 4.6794 4.6798 -0.9251 11 6 5.4714 4.0062 -2.0680 12 6 5.1729 2.5102 -1.8844 13 6 4.9664 4.4952 -3.4184 14 6 5.2111 6.0019 -3.5450 15 6 6.7132 6.2814 -3.4336 16 7 7.2133 5.7049 -2.1781 17 6 7.8998 6.4766 -1.2790 18 1 7.7725 6.3131 -0.2191 19 6 8.7593 7.4689 -1.7299 20 7 9.2630 8.3391 -0.8805 21 14 9.2010 7.5695 -3.5422 22 1 8.1649 8.3533 -4.2615 23 1 10.5197 8.2352 -3.6941 24 1 9.2696 6.1997 -4.1116 25 6 6.9617 4.2812 -1.9077 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.8051 1.0294 1.9831 30 1 2.7463 2.7247 1.4439 31 1 1.2493 1.8923 1.9280 32 1 2.6939 4.0590 -1.6016 33 1 2.9799 3.8248 0.1499 34 1 5.2434 4.6574 0.0074 35 1 4.4042 5.7009 -1.1891 36 1 5.9881 2.0331 -1.3406 37 1 5.0441 2.0353 -2.8570 38 1 5.4970 3.9734 -4.2148 39 1 3.8985 4.2935 -3.5012 40 1 4.8469 6.3498 -4.5116 41 1 4.6830 6.5246 -2.7475 42 1 7.2326 5.8260 -4.2769 43 1 6.8853 7.3577 -3.4371 44 1 9.8634 9.0328 -1.1958 45 1 7.2696 4.0428 -0.8896 46 1 7.5239 3.6703 -2.6139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040105710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:05 Heat of formation + Delta-G solvation = -51.295814 kcal Electronic energy + Delta-G solvation = -25521.200992 eV Core-core repulsion = 22025.771810 eV Total energy + Delta-G solvation = -3495.429182 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.58762 -39.09155 -37.55069 -36.04108 -33.25491 -32.10207 -30.92248 -30.87289 -29.47839 -27.09982 -26.29581 -25.37128 -24.03449 -22.86655 -21.95250 -21.23763 -19.50599 -18.35048 -17.45899 -16.84352 -16.61859 -16.10613 -15.51755 -15.45991 -15.36497 -14.47596 -14.07181 -13.94440 -13.80799 -13.57180 -13.46354 -13.26987 -13.00236 -12.66762 -12.65558 -12.25252 -12.19173 -12.00993 -11.97481 -11.51960 -11.51290 -11.39724 -10.93355 -10.76613 -10.57003 -10.43875 -10.21565 -10.02389 -9.87779 -9.63052 -9.56820 -9.51694 -8.64287 -8.61594 -6.87567 -5.97380 -3.45129 2.55307 2.66465 3.28169 3.45004 3.47695 3.69937 4.28589 4.49085 4.58570 4.66045 4.72943 4.74404 4.98456 4.99800 5.06201 5.10410 5.15528 5.26009 5.30322 5.36643 5.39734 5.42930 5.49444 5.59563 5.68510 5.79605 5.88090 5.92830 5.95404 6.07373 6.14603 6.22202 6.29537 6.36125 6.44463 6.52511 6.59087 6.64235 6.71392 6.78038 6.90391 7.49357 8.01363 8.14722 8.32488 8.91041 9.67632 10.08950 11.18443 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.033193 B = 0.003627 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.359453 B = 7717.437896 C = 7911.780758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.075 3.925 4 H 0.082 0.918 5 C -0.173 4.173 6 C 0.528 3.472 7 O -0.524 6.524 8 N -0.613 5.613 9 C 0.089 3.911 10 C -0.109 4.109 11 C -0.086 4.086 12 C 0.121 3.879 13 C -0.095 4.095 14 C -0.135 4.135 15 C 0.120 3.880 16 N -0.603 5.603 17 C -0.260 4.260 18 H 0.083 0.917 19 C 0.027 3.973 20 N -0.914 5.914 21 Si 0.895 3.105 22 H -0.287 1.287 23 H -0.305 1.305 24 H -0.271 1.271 25 C 0.165 3.835 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.072 0.928 44 H 0.263 0.737 45 H 0.066 0.934 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.802 -9.528 -0.264 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.014 3.986 4 H 0.100 0.900 5 C -0.231 4.231 6 C 0.315 3.685 7 O -0.400 6.400 8 N -0.349 5.349 9 C -0.034 4.034 10 C -0.147 4.147 11 C -0.088 4.088 12 C -0.001 4.001 13 C -0.133 4.133 14 C -0.175 4.175 15 C -0.005 4.005 16 N -0.327 5.327 17 C -0.389 4.389 18 H 0.100 0.900 19 C -0.172 4.172 20 N -0.557 5.557 21 Si 0.726 3.274 22 H -0.214 1.214 23 H -0.233 1.233 24 H -0.196 1.196 25 C 0.039 3.961 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.090 0.910 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -17.299 -10.215 -0.308 20.092 hybrid contribution -0.003 0.510 -1.043 1.161 sum -17.303 -9.705 -1.351 19.885 Atomic orbital electron populations 1.22877 0.80715 1.03184 1.00023 1.88051 1.19559 1.25337 1.94966 1.21880 0.93341 0.86502 0.96903 0.89981 1.22290 1.03317 1.02663 0.94824 1.19983 0.86448 0.82908 0.79209 1.90714 1.64738 1.29057 1.55461 1.48533 1.25811 1.05624 1.54950 1.22714 0.98181 0.81691 1.00800 1.22778 0.93891 0.98842 0.99147 1.21606 0.99458 0.91957 0.95789 1.21964 0.85808 0.96958 0.95406 1.21299 0.99519 0.96734 0.95703 1.22085 0.99364 0.95363 1.00644 1.21429 0.91614 0.98491 0.88995 1.44266 1.63917 1.04631 1.19877 1.18843 1.17958 1.12858 0.89225 0.89983 1.25472 0.96380 0.97935 0.97414 1.69756 1.34418 1.17293 1.34198 0.86816 0.76407 0.77877 0.86269 1.21430 1.23350 1.19582 1.20783 0.89625 0.86049 0.99670 0.93891 0.89168 0.93805 0.90817 0.90399 0.91249 0.91457 0.90637 0.90244 0.89007 0.91022 0.91595 0.92292 0.92955 0.92829 0.91480 0.95791 0.91022 0.92699 0.91562 0.95715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.32 16 2 O -0.36 -4.50 9.93 -54.66 -0.54 -5.05 16 3 C 0.08 0.83 2.49 -27.89 -0.07 0.76 16 4 H 0.08 0.71 7.56 -51.93 -0.39 0.32 16 5 C -0.17 -1.58 9.35 37.16 0.35 -1.23 16 6 C 0.53 7.75 7.14 -10.99 -0.08 7.67 16 7 O -0.52 -9.96 16.90 -13.87 -0.23 -10.19 16 8 N -0.61 -8.16 3.33 -170.53 -0.57 -8.73 16 9 C 0.09 0.96 6.13 -2.30 -0.01 0.95 16 10 C -0.11 -1.48 5.74 -24.73 -0.14 -1.63 16 11 C -0.09 -1.27 0.55 -154.08 -0.09 -1.36 16 12 C 0.12 1.74 6.06 -3.33 -0.02 1.72 16 13 C -0.09 -1.34 4.55 -27.03 -0.12 -1.46 16 14 C -0.14 -2.15 5.90 -26.54 -0.16 -2.30 16 15 C 0.12 2.45 4.14 -3.71 -0.02 2.43 16 16 N -0.60 -13.38 2.54 -172.68 -0.44 -13.82 16 17 C -0.26 -6.92 10.04 -15.06 -0.15 -7.08 16 18 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 19 C 0.03 0.77 5.36 -17.43 -0.09 0.67 16 20 N -0.91 -27.42 13.97 55.49 0.78 -26.64 16 21 Si 0.90 22.08 24.29 -169.99 -4.13 17.95 16 22 H -0.29 -6.76 6.48 56.52 0.37 -6.39 16 23 H -0.31 -7.73 7.11 56.52 0.40 -7.33 16 24 H -0.27 -6.59 6.61 56.52 0.37 -6.22 16 25 C 0.17 3.06 5.07 -4.04 -0.02 3.04 16 26 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.26 8.00 -51.92 -0.42 -0.15 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.66 5.75 -51.93 -0.30 0.36 16 31 H 0.07 0.48 8.00 -51.93 -0.42 0.07 16 32 H 0.07 0.65 7.74 -51.93 -0.40 0.25 16 33 H 0.08 0.68 5.43 -51.93 -0.28 0.39 16 34 H 0.08 1.18 7.91 -51.93 -0.41 0.77 16 35 H 0.09 1.31 6.00 -51.93 -0.31 1.00 16 36 H 0.07 1.09 7.80 -51.93 -0.40 0.69 16 37 H 0.07 0.94 7.83 -51.93 -0.41 0.54 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.65 7.46 -51.93 -0.39 0.26 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.06 6.23 -51.93 -0.32 0.74 16 42 H 0.02 0.50 6.91 -51.93 -0.36 0.14 16 43 H 0.07 1.61 4.72 -51.93 -0.25 1.37 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.07 1.26 7.79 -51.93 -0.40 0.86 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 344.74 15.07 5.20 5.20 Total: -1.00 -32.76 344.74 -7.08 -39.84 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.61 Total: -2.06 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 0.47 Total: 3.50 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.23 Total: -49.19 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.78 Total: -15.24 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.13 Total: 17.95 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.76 -7.08 -39.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040105710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.451 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds