Wall clock time and date at job start Fri Apr 10 2020 14:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00054 * 2 1 4 4 H 1.09004 * 109.47082 * 329.99433 * 3 2 1 5 5 C 1.52996 * 109.47470 * 89.99850 * 3 2 1 6 6 C 1.50697 * 109.47181 * 210.00435 * 3 2 1 7 7 O 1.21284 * 119.99588 * 344.62157 * 6 3 2 8 8 N 1.34777 * 120.00330 * 164.63078 * 6 3 2 9 9 C 1.47479 * 125.65880 * 3.86424 * 8 6 3 10 10 C 1.55285 * 104.77411 * 155.88903 * 9 8 6 11 11 C 1.54502 * 101.41539 * 36.68252 * 10 9 8 12 12 C 1.47191 * 125.66033 * 184.17345 * 8 6 3 13 13 C 1.52240 * 110.24608 * 83.58979 * 11 10 9 14 14 C 1.53169 * 109.65233 * 62.92269 * 13 11 10 15 15 C 1.53193 * 109.27499 * 60.17170 * 14 13 11 16 16 N 1.46924 * 108.92454 * 304.77608 * 15 14 13 17 17 C 1.36942 * 120.70161 * 234.13782 * 16 15 14 18 18 H 1.07997 * 119.99890 * 144.02403 * 17 16 15 19 19 C 1.38808 * 119.99842 * 324.02125 * 17 16 15 20 20 N 1.31622 * 119.99832 * 169.79960 * 19 17 16 21 21 Si 1.86802 * 120.00250 * 349.80319 * 19 17 16 22 22 H 1.48497 * 109.47147 * 85.50283 * 21 19 17 23 23 H 1.48504 * 109.47267 * 205.50625 * 21 19 17 24 24 H 1.48499 * 109.47001 * 325.50174 * 21 19 17 25 25 C 1.47081 * 118.60094 * 54.16585 * 16 15 14 26 26 H 1.08994 * 109.47377 * 60.00080 * 1 2 3 27 27 H 1.09001 * 109.47082 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47089 * 300.00137 * 1 2 3 29 29 H 1.08994 * 109.47473 * 54.68307 * 5 3 2 30 30 H 1.09002 * 109.47307 * 174.68575 * 5 3 2 31 31 H 1.08999 * 109.46915 * 294.68092 * 5 3 2 32 32 H 1.08997 * 110.35528 * 274.84777 * 9 8 6 33 33 H 1.08994 * 110.35682 * 37.14126 * 9 8 6 34 34 H 1.09007 * 111.22784 * 278.58900 * 10 9 8 35 35 H 1.09000 * 110.90177 * 154.64045 * 10 9 8 36 36 H 1.08995 * 109.91387 * 300.87849 * 12 8 6 37 37 H 1.09002 * 109.91068 * 62.14589 * 12 8 6 38 38 H 1.08999 * 109.44152 * 182.97237 * 13 11 10 39 39 H 1.08993 * 109.44586 * 302.90251 * 13 11 10 40 40 H 1.08992 * 109.50633 * 180.11666 * 14 13 11 41 41 H 1.09002 * 109.49899 * 300.19718 * 14 13 11 42 42 H 1.09006 * 109.55591 * 64.61089 * 15 14 13 43 43 H 1.09001 * 109.55777 * 184.82853 * 15 14 13 44 44 H 0.97007 * 119.99374 * 180.02562 * 20 19 17 45 45 H 1.08999 * 109.57964 * 187.74432 * 25 16 15 46 46 H 1.08997 * 109.58100 * 67.34879 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3386 1.2639 -0.7105 7 8 3.8790 0.1993 -0.9240 8 7 3.9261 2.4097 -1.1085 9 6 3.4231 3.7707 -0.8444 10 6 4.6794 4.6798 -0.9251 11 6 5.4714 4.0062 -2.0680 12 6 5.1729 2.5102 -1.8844 13 6 4.9664 4.4952 -3.4184 14 6 5.2111 6.0019 -3.5450 15 6 6.7132 6.2814 -3.4336 16 7 7.2133 5.7049 -2.1781 17 6 7.8998 6.4766 -1.2790 18 1 7.7725 6.3131 -0.2191 19 6 8.7593 7.4689 -1.7299 20 7 9.2630 8.3391 -0.8805 21 14 9.2010 7.5695 -3.5422 22 1 8.1649 8.3533 -4.2615 23 1 10.5197 8.2352 -3.6941 24 1 9.2696 6.1997 -4.1116 25 6 6.9617 4.2812 -1.9077 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.8051 1.0294 1.9831 30 1 2.7463 2.7247 1.4439 31 1 1.2493 1.8923 1.9280 32 1 2.6939 4.0590 -1.6016 33 1 2.9799 3.8248 0.1499 34 1 5.2434 4.6574 0.0074 35 1 4.4042 5.7009 -1.1891 36 1 5.9881 2.0331 -1.3406 37 1 5.0441 2.0353 -2.8570 38 1 5.4970 3.9734 -4.2148 39 1 3.8985 4.2935 -3.5012 40 1 4.8469 6.3498 -4.5116 41 1 4.6830 6.5246 -2.7475 42 1 7.2326 5.8260 -4.2769 43 1 6.8853 7.3577 -3.4371 44 1 9.8634 9.0328 -1.1958 45 1 7.2696 4.0428 -0.8896 46 1 7.5239 3.6703 -2.6139 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040105710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:04 Heat of formation + Delta-G solvation = -73.315737 kcal Electronic energy + Delta-G solvation = -25522.155847 eV Core-core repulsion = 22025.771810 eV Total energy + Delta-G solvation = -3496.384038 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71490 -40.23352 -38.53472 -37.44994 -34.86459 -33.36519 -32.63502 -31.97363 -30.58569 -27.74352 -27.57127 -27.08097 -25.06833 -23.98760 -23.39585 -22.72982 -20.53852 -19.65305 -18.66420 -18.41506 -17.65341 -17.23473 -17.11646 -16.49034 -16.28687 -15.71421 -15.53540 -15.25747 -15.20308 -14.88945 -14.65561 -14.41655 -14.07983 -13.84622 -13.75648 -13.58692 -13.44929 -13.27665 -13.01019 -12.92823 -12.75681 -12.46381 -12.25170 -12.09148 -12.07603 -11.95676 -11.47855 -11.44111 -11.22175 -11.11058 -11.05662 -10.67322 -10.52715 -9.71476 -8.75549 -8.14270 -5.57353 1.30397 1.42270 1.48340 1.50776 1.68821 2.42536 2.92122 3.14006 3.21328 3.43123 3.61223 3.74212 3.80949 3.89002 4.00979 4.17958 4.21828 4.28949 4.41743 4.45575 4.46766 4.52171 4.55920 4.62901 4.66303 4.73012 4.79207 4.80902 4.86296 4.86843 5.00784 5.03300 5.06943 5.11947 5.19626 5.21273 5.24216 5.32196 5.44051 5.61128 5.95386 6.07429 6.17635 6.46200 6.96248 7.06500 7.62775 8.07492 9.05500 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.033193 B = 0.003627 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.359453 B = 7717.437896 C = 7911.780758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.079 3.921 4 H 0.116 0.884 5 C -0.169 4.169 6 C 0.520 3.480 7 O -0.579 6.579 8 N -0.611 5.611 9 C 0.096 3.904 10 C -0.109 4.109 11 C -0.076 4.076 12 C 0.125 3.875 13 C -0.089 4.089 14 C -0.126 4.126 15 C 0.112 3.888 16 N -0.614 5.614 17 C -0.241 4.241 18 H 0.048 0.952 19 C -0.032 4.032 20 N -0.963 5.963 21 Si 0.955 3.045 22 H -0.267 1.267 23 H -0.317 1.317 24 H -0.265 1.265 25 C 0.163 3.837 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.026 0.974 43 H 0.050 0.950 44 H 0.261 0.739 45 H 0.049 0.951 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.210 -9.739 -1.734 23.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C 0.018 3.982 4 H 0.133 0.867 5 C -0.226 4.226 6 C 0.309 3.691 7 O -0.458 6.458 8 N -0.345 5.345 9 C -0.025 4.025 10 C -0.146 4.146 11 C -0.079 4.079 12 C 0.002 3.998 13 C -0.127 4.127 14 C -0.165 4.165 15 C -0.012 4.012 16 N -0.339 5.339 17 C -0.371 4.371 18 H 0.066 0.934 19 C -0.226 4.226 20 N -0.609 5.609 21 Si 0.785 3.215 22 H -0.193 1.193 23 H -0.246 1.246 24 H -0.190 1.190 25 C 0.037 3.963 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -20.766 -10.428 -1.796 23.306 hybrid contribution 1.048 0.507 -0.506 1.269 sum -19.718 -9.921 -2.303 22.193 Atomic orbital electron populations 1.23113 0.78432 1.04249 1.01618 1.88013 1.22131 1.26332 1.95197 1.21967 0.91600 0.86947 0.97646 0.86674 1.22286 1.04658 1.02139 0.93566 1.20815 0.87548 0.82179 0.78534 1.90684 1.66411 1.31041 1.57710 1.48586 1.25206 1.06530 1.54165 1.22850 0.97021 0.79235 1.03417 1.22703 0.94985 0.99397 0.97562 1.21403 0.96573 0.92540 0.97342 1.21797 0.86206 0.96229 0.95616 1.21287 1.01430 0.95309 0.94650 1.21983 0.95457 0.96707 1.02330 1.21509 0.95066 0.97008 0.87659 1.44335 1.63971 1.05733 1.19829 1.18743 1.17266 1.12345 0.88754 0.93406 1.26104 0.96977 0.98168 1.01377 1.69898 1.36155 1.18640 1.36220 0.85837 0.75830 0.78074 0.81799 1.19292 1.24607 1.19027 1.20857 0.92725 0.84009 0.98690 0.92576 0.88588 0.91791 0.92888 0.89693 0.88436 0.88466 0.88122 0.92433 0.89113 0.92890 0.91159 0.92016 0.89802 0.90001 0.91322 0.95602 0.93211 0.93020 0.93273 0.95680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.40 -9.14 9.93 -130.41 -1.29 -10.44 16 3 C 0.08 1.53 2.49 29.85 0.07 1.60 16 4 H 0.12 1.43 7.56 -2.38 -0.02 1.41 16 5 C -0.17 -2.60 9.35 71.98 0.67 -1.92 16 6 C 0.52 14.47 7.14 87.66 0.63 15.09 16 7 O -0.58 -22.08 16.90 15.53 0.26 -21.82 16 8 N -0.61 -14.86 3.33 -811.82 -2.70 -17.56 16 9 C 0.10 1.72 6.13 86.98 0.53 2.25 16 10 C -0.11 -2.75 5.74 31.89 0.18 -2.57 16 11 C -0.08 -2.13 0.55 -51.91 -0.03 -2.16 16 12 C 0.12 3.42 6.06 86.47 0.52 3.94 16 13 C -0.09 -2.18 4.55 30.40 0.14 -2.04 16 14 C -0.13 -3.55 5.90 30.72 0.18 -3.36 16 15 C 0.11 4.36 4.14 86.36 0.36 4.72 16 16 N -0.61 -27.17 2.54 -700.23 -1.78 -28.95 16 17 C -0.24 -13.20 10.04 84.03 0.84 -12.35 16 18 H 0.05 2.90 8.06 -2.91 -0.02 2.87 16 19 C -0.03 -1.81 5.36 84.86 0.45 -1.35 16 20 N -0.96 -59.81 13.97 21.65 0.30 -59.51 16 21 Si 0.96 46.12 24.29 68.60 1.67 47.78 16 22 H -0.27 -11.90 6.48 99.48 0.64 -11.25 16 23 H -0.32 -15.78 7.11 99.48 0.71 -15.08 16 24 H -0.27 -12.41 6.61 99.48 0.66 -11.75 16 25 C 0.16 6.04 5.07 86.07 0.44 6.48 16 26 H 0.06 0.55 8.08 -2.39 -0.02 0.53 16 27 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 0.53 8.00 -2.38 -0.02 0.51 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.16 5.75 -2.39 -0.01 1.14 16 31 H 0.10 0.96 8.00 -2.39 -0.02 0.94 16 32 H 0.10 1.28 7.74 -2.39 -0.02 1.26 16 33 H 0.10 1.36 5.43 -2.39 -0.01 1.34 16 34 H 0.06 1.70 7.91 -2.38 -0.02 1.69 16 35 H 0.09 2.36 6.00 -2.39 -0.01 2.34 16 36 H 0.05 1.64 7.80 -2.39 -0.02 1.62 16 37 H 0.07 1.89 7.83 -2.39 -0.02 1.87 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.61 7.46 -2.39 -0.02 1.59 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 1.94 6.23 -2.39 -0.01 1.92 16 42 H 0.03 1.01 6.91 -2.38 -0.02 0.99 16 43 H 0.05 2.16 4.72 -2.39 -0.01 2.14 16 44 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 45 H 0.05 1.95 7.79 -2.39 -0.02 1.93 16 46 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -75.11 344.74 3.52 -71.59 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.85 Total: 9.08 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 6.22 Total: 9.82 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -4.18 Total: -106.02 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.03 Total: -32.26 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.67 Total: 47.78 kcal Total: -75.11 3.52 -71.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040105710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.726 kcal (2) G-P(sol) polarization free energy of solvation -75.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds