Wall clock time and date at job start Fri Apr 10 2020 14:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00583 * 2 1 4 4 H 1.09002 * 109.46692 * 29.99736 * 3 2 1 5 5 C 1.52995 * 109.46869 * 270.00258 * 3 2 1 6 6 C 1.50695 * 109.47383 * 149.99879 * 3 2 1 7 7 O 1.21282 * 119.99841 * 6.59204 * 6 3 2 8 8 N 1.34780 * 120.00203 * 186.86053 * 6 3 2 9 9 C 1.47081 * 125.62900 * 174.99461 * 8 6 3 10 10 C 1.54467 * 107.30309 * 180.98476 * 9 8 6 11 11 C 1.54346 * 102.85648 * 21.47620 * 10 9 8 12 12 C 1.47581 * 125.62322 * 354.69615 * 8 6 3 13 13 C 1.52074 * 110.61157 * 83.54049 * 11 10 9 14 14 C 1.53194 * 109.67455 * 64.18679 * 13 11 10 15 15 C 1.53190 * 109.27750 * 59.96744 * 14 13 11 16 16 N 1.46932 * 108.92778 * 304.67321 * 15 14 13 17 17 C 1.36938 * 120.71481 * 234.28380 * 16 15 14 18 18 H 1.07996 * 119.99609 * 34.25372 * 17 16 15 19 19 C 1.38810 * 119.99973 * 214.25272 * 17 16 15 20 20 N 1.31616 * 120.00115 * 15.73869 * 19 17 16 21 21 Si 1.86803 * 120.00001 * 195.73154 * 19 17 16 22 22 H 1.48505 * 109.46783 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47127 * 120.00023 * 21 19 17 24 24 H 1.48493 * 109.47452 * 240.00631 * 21 19 17 25 25 C 1.47111 * 118.57355 * 54.26050 * 16 15 14 26 26 H 1.08993 * 109.47568 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46758 * 300.00571 * 1 2 3 28 28 H 1.08997 * 109.47111 * 59.99301 * 1 2 3 29 29 H 1.08999 * 109.47305 * 303.66702 * 5 3 2 30 30 H 1.09001 * 109.47689 * 63.67013 * 5 3 2 31 31 H 1.09005 * 109.47008 * 183.66634 * 5 3 2 32 32 H 1.09000 * 109.87968 * 300.40775 * 9 8 6 33 33 H 1.08999 * 109.87777 * 61.40487 * 9 8 6 34 34 H 1.08999 * 110.73733 * 139.82234 * 10 9 8 35 35 H 1.09005 * 110.73568 * 263.13592 * 10 9 8 36 36 H 1.08996 * 110.37338 * 275.53573 * 12 8 6 37 37 H 1.09001 * 110.38165 * 37.88841 * 12 8 6 38 38 H 1.08995 * 109.44084 * 184.24948 * 13 11 10 39 39 H 1.09001 * 109.43903 * 304.17265 * 13 11 10 40 40 H 1.09008 * 109.49880 * 179.90034 * 14 13 11 41 41 H 1.08993 * 109.50726 * 299.97931 * 14 13 11 42 42 H 1.08999 * 109.56431 * 64.51210 * 15 14 13 43 43 H 1.09005 * 109.55743 * 184.72727 * 15 14 13 44 44 H 0.97003 * 119.99901 * 179.97438 * 20 19 17 45 45 H 1.09003 * 109.57667 * 187.94046 * 25 16 15 46 46 H 1.08994 * 109.57598 * 67.55754 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7712 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.8032 0.2013 1.0658 8 7 4.0079 2.4077 0.9557 9 6 5.2553 2.5221 1.7265 10 6 5.6360 4.0187 1.7648 11 6 4.2924 4.7223 1.4786 12 6 3.6132 3.7513 0.4898 13 6 3.4770 4.8589 2.7549 14 6 4.2120 5.7721 3.7412 15 6 4.4025 7.1531 3.1061 16 7 5.0964 6.9948 1.8207 17 6 6.2479 7.6878 1.5575 18 1 6.9471 7.8953 2.3539 19 6 6.5162 8.1233 0.2671 20 7 5.5543 8.1533 -0.6308 21 14 8.2426 8.6670 -0.1951 22 1 9.1346 8.5385 0.9852 23 1 8.7529 7.8113 -1.2962 24 1 8.2128 10.0829 -0.6417 25 6 4.5279 6.0756 0.8227 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 2.8297 1.0433 -1.9750 30 1 1.2508 1.8640 -1.9370 31 1 2.7204 2.7385 -1.4432 32 1 5.0997 2.1533 2.7403 33 1 6.0450 1.9488 1.2409 34 1 6.0148 4.2955 2.7487 35 1 6.3663 4.2511 0.9896 36 1 3.9751 3.9229 -0.5239 37 1 2.5299 3.8644 0.5313 38 1 2.5035 5.2885 2.5192 39 1 3.3403 3.8756 3.2050 40 1 3.6243 5.8694 4.6542 41 1 5.1851 5.3427 3.9789 42 1 3.4298 7.6163 2.9412 43 1 4.9978 7.7807 3.7693 44 1 5.7418 8.4580 -1.5324 45 1 5.2244 5.9625 -0.0082 46 1 3.5816 6.4738 0.4567 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040105711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:08 Heat of formation + Delta-G solvation = -59.423746 kcal Electronic energy + Delta-G solvation = -25791.410838 eV Core-core repulsion = 22295.629202 eV Total energy + Delta-G solvation = -3495.781636 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.43933 -38.86518 -37.41411 -35.74082 -33.10602 -32.19348 -30.92571 -30.07260 -29.20456 -26.98432 -25.77106 -25.35768 -24.29487 -22.48905 -21.90578 -20.79140 -19.40328 -18.15032 -17.35506 -16.76283 -16.46737 -15.81658 -15.64706 -15.27578 -14.70381 -14.24299 -14.09823 -13.85152 -13.55257 -13.43588 -13.21907 -13.06175 -12.70221 -12.60273 -12.42713 -12.28422 -12.02757 -11.85598 -11.81207 -11.28950 -11.20239 -11.05038 -10.80351 -10.59395 -10.46645 -10.21174 -10.15014 -10.11849 -9.89280 -9.71433 -9.48517 -9.38658 -8.55135 -8.44994 -6.64289 -5.86954 -3.34508 2.69390 2.79936 3.31901 3.41221 3.42731 3.83027 4.42077 4.47344 4.73297 4.78468 4.87113 5.08298 5.10947 5.16612 5.20664 5.36775 5.41800 5.47594 5.48275 5.51969 5.55479 5.59007 5.61354 5.80705 5.89193 5.93422 6.01765 6.04414 6.15661 6.27904 6.30563 6.40853 6.47182 6.63272 6.70137 6.74517 6.83049 6.90200 6.96846 7.18851 7.42821 7.64031 7.76338 8.27253 8.41385 9.14424 9.76015 10.37561 11.21437 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.021022 B = 0.004223 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.636926 B = 6628.937311 C = 6970.582305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.074 3.926 4 H 0.085 0.915 5 C -0.176 4.176 6 C 0.528 3.472 7 O -0.531 6.531 8 N -0.611 5.611 9 C 0.110 3.890 10 C -0.108 4.108 11 C -0.091 4.091 12 C 0.106 3.894 13 C -0.092 4.092 14 C -0.135 4.135 15 C 0.145 3.855 16 N -0.586 5.586 17 C -0.256 4.256 18 H 0.062 0.938 19 C 0.011 3.989 20 N -0.899 5.899 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.194 3.806 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.053 0.947 44 H 0.254 0.746 45 H 0.078 0.922 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.774 -9.638 1.698 13.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.013 3.987 4 H 0.103 0.897 5 C -0.233 4.233 6 C 0.315 3.685 7 O -0.407 6.407 8 N -0.347 5.347 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.094 4.094 12 C -0.017 4.017 13 C -0.130 4.130 14 C -0.174 4.174 15 C 0.018 3.982 16 N -0.309 5.309 17 C -0.385 4.385 18 H 0.080 0.920 19 C -0.188 4.188 20 N -0.542 5.542 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.068 3.932 26 H 0.107 0.893 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.437 -10.387 1.708 13.490 hybrid contribution 0.550 0.594 -0.416 0.910 sum -7.887 -9.793 1.292 12.640 Atomic orbital electron populations 1.22865 0.80787 1.03051 1.00068 1.88029 1.19514 1.25462 1.94973 1.21871 0.93447 0.86409 0.96967 0.89707 1.22318 1.03381 1.02887 0.94762 1.19972 0.85959 0.82843 0.79724 1.90693 1.68740 1.29079 1.52163 1.48541 1.25823 1.06869 1.53421 1.22057 0.85445 0.98405 0.95346 1.22558 0.97588 0.90692 1.03719 1.21898 0.94353 0.97869 0.95262 1.22541 0.99587 0.80820 0.98761 1.21177 0.98108 0.98551 0.95143 1.22084 0.99765 0.98517 0.97081 1.20923 0.95475 0.93043 0.88731 1.43910 1.27026 1.47005 1.12919 1.19113 0.95513 1.29645 0.94263 0.91987 1.25169 0.97340 0.98273 0.98065 1.70022 1.30222 1.49841 1.04095 0.86311 0.84665 0.78011 0.78310 1.20142 1.21507 1.21658 1.20443 0.97631 0.83673 0.91487 0.89270 0.93892 0.93806 0.91117 0.91292 0.90112 0.92024 0.91912 0.89703 0.90328 0.90586 0.91049 0.92606 0.93492 0.93184 0.92112 0.96560 0.92891 0.93645 0.90395 0.95953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.36 16 2 O -0.36 -4.98 9.89 -55.06 -0.54 -5.53 16 3 C 0.07 0.95 2.46 -27.89 -0.07 0.88 16 4 H 0.09 0.91 7.30 -51.93 -0.38 0.53 16 5 C -0.18 -1.91 9.42 37.16 0.35 -1.56 16 6 C 0.53 8.50 7.23 -10.99 -0.08 8.42 16 7 O -0.53 -10.61 16.84 -14.27 -0.24 -10.85 16 8 N -0.61 -9.17 3.32 -170.62 -0.57 -9.74 16 9 C 0.11 1.66 6.51 -2.95 -0.02 1.64 16 10 C -0.11 -1.73 5.67 -25.26 -0.14 -1.88 16 11 C -0.09 -1.49 0.55 -153.97 -0.08 -1.57 16 12 C 0.11 1.50 4.19 -2.75 -0.01 1.49 16 13 C -0.09 -1.41 4.69 -27.10 -0.13 -1.53 16 14 C -0.14 -2.16 5.91 -26.53 -0.16 -2.32 16 15 C 0.14 2.82 6.49 -3.71 -0.02 2.80 16 16 N -0.59 -13.39 2.85 -172.75 -0.49 -13.88 16 17 C -0.26 -6.55 9.52 -15.06 -0.14 -6.70 16 18 H 0.06 1.60 7.88 -52.49 -0.41 1.18 16 19 C 0.01 0.29 4.90 -17.43 -0.09 0.21 16 20 N -0.90 -24.57 11.63 55.49 0.65 -23.92 16 21 Si 0.90 20.71 29.58 -169.99 -5.03 15.68 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.19 4.05 3.91 -4.10 -0.02 4.04 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.35 8.09 -51.92 -0.42 -0.07 16 28 H 0.04 0.32 7.95 -51.93 -0.41 -0.09 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.61 7.96 -51.93 -0.41 0.19 16 31 H 0.08 0.86 5.49 -51.93 -0.29 0.58 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.38 6.09 -51.93 -0.32 1.07 16 35 H 0.08 1.37 7.87 -51.93 -0.41 0.96 16 36 H 0.08 1.08 7.13 -51.93 -0.37 0.71 16 37 H 0.07 0.88 7.18 -51.93 -0.37 0.51 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.68 7.83 -51.93 -0.41 0.28 16 40 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 41 H 0.06 0.99 6.31 -51.93 -0.33 0.66 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.05 1.03 7.94 -51.93 -0.41 0.62 16 44 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 45 H 0.08 1.84 6.42 -51.93 -0.33 1.51 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -30.60 352.60 -8.22 -38.81 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.79 Total: -1.15 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 0.48 Total: 5.27 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.41 Total: -47.55 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.78 Total: -16.38 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.60 -8.22 -38.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040105711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.611 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds