Wall clock time and date at job start Fri Apr 10 2020 14:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99760 * 2 1 4 4 H 1.08992 * 109.47153 * 29.99944 * 3 2 1 5 5 C 1.52998 * 109.46875 * 269.99759 * 3 2 1 6 6 C 1.50700 * 109.46753 * 150.00033 * 3 2 1 7 7 O 1.21284 * 120.00447 * 4.99309 * 6 3 2 8 8 N 1.34777 * 119.99873 * 184.99557 * 6 3 2 9 9 C 1.47486 * 125.66051 * 359.69903 * 8 6 3 10 10 C 1.55284 * 104.78026 * 155.87876 * 9 8 6 11 11 C 1.54482 * 101.41933 * 36.67106 * 10 9 8 12 12 C 1.47178 * 125.66196 * 179.97438 * 8 6 3 13 13 C 1.52245 * 110.29166 * 206.46332 * 11 10 9 14 14 C 1.53162 * 109.64651 * 178.00056 * 13 11 10 15 15 C 1.53187 * 109.27398 * 60.18656 * 14 13 11 16 16 N 1.46937 * 108.92550 * 304.76963 * 15 14 13 17 17 C 1.36932 * 120.69933 * 234.13567 * 16 15 14 18 18 H 1.08002 * 120.00456 * 27.25423 * 17 16 15 19 19 C 1.38816 * 119.99674 * 207.25069 * 17 16 15 20 20 N 1.31618 * 120.00275 * 17.20402 * 19 17 16 21 21 Si 1.86803 * 119.99943 * 197.20614 * 19 17 16 22 22 H 1.48502 * 109.46873 * 59.99994 * 21 19 17 23 23 H 1.48496 * 109.47138 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47041 * 299.99797 * 21 19 17 25 25 C 1.47085 * 118.59489 * 54.16009 * 16 15 14 26 26 H 1.08998 * 109.47028 * 60.00390 * 1 2 3 27 27 H 1.08997 * 109.47399 * 300.00131 * 1 2 3 28 28 H 1.09004 * 109.47021 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46863 * 300.00164 * 5 3 2 30 30 H 1.08993 * 109.47483 * 60.00058 * 5 3 2 31 31 H 1.09004 * 109.47061 * 180.02562 * 5 3 2 32 32 H 1.09008 * 110.34948 * 274.83800 * 9 8 6 33 33 H 1.08994 * 110.35686 * 37.12704 * 9 8 6 34 34 H 1.08999 * 111.23122 * 278.57524 * 10 9 8 35 35 H 1.08999 * 110.89866 * 154.62188 * 10 9 8 36 36 H 1.09003 * 109.91595 * 300.90236 * 12 8 6 37 37 H 1.09003 * 109.91265 * 61.98523 * 12 8 6 38 38 H 1.08998 * 109.43995 * 298.05723 * 13 11 10 39 39 H 1.09000 * 109.43807 * 57.98314 * 13 11 10 40 40 H 1.09011 * 109.49987 * 180.12095 * 14 13 11 41 41 H 1.08996 * 109.50755 * 300.23812 * 14 13 11 42 42 H 1.09003 * 109.56500 * 64.60761 * 15 14 13 43 43 H 1.09003 * 109.56556 * 184.94166 * 15 14 13 44 44 H 0.96994 * 120.00431 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.57402 * 187.75084 * 25 16 15 46 46 H 1.08992 * 109.57804 * 67.35486 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2176 1.7713 -1.4425 6 6 3.3386 1.2639 0.7104 7 8 3.7896 0.2045 1.0915 8 7 4.0254 2.4040 0.9223 9 6 3.5994 3.7540 0.5085 10 6 4.3406 4.7170 1.4753 11 6 5.6980 3.9986 1.6415 12 6 5.3277 2.5078 1.6001 13 6 6.3263 4.3601 2.9803 14 6 7.6461 3.6019 3.1513 15 6 8.6032 3.9915 2.0204 16 7 7.9428 3.7450 0.7311 17 6 8.5405 2.9652 -0.2227 18 1 9.2356 2.1920 0.0697 19 6 8.2529 3.1684 -1.5654 20 7 7.6917 4.2933 -1.9554 21 14 8.6624 1.8454 -2.8190 22 1 7.9302 0.5987 -2.4799 23 1 8.2583 2.3037 -4.1724 24 1 10.1237 1.5817 -2.8010 25 6 6.6265 4.3540 0.4865 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 2.8829 1.0773 -1.9563 30 1 1.2569 1.8013 -1.9564 31 1 2.6614 2.7669 -1.4425 32 1 3.8959 3.9455 -0.5228 33 1 2.5206 3.8619 0.6201 34 1 3.8204 4.7954 2.4299 35 1 4.4712 5.6992 1.0212 36 1 5.2507 2.1160 2.6144 37 1 6.0814 1.9507 1.0434 38 1 6.5170 5.4327 3.0137 39 1 5.6449 4.0875 3.7862 40 1 8.0928 3.8609 4.1114 41 1 7.4570 2.5291 3.1147 42 1 8.8567 5.0483 2.1045 43 1 9.5102 3.3906 2.0865 44 1 7.4911 4.4355 -2.8937 45 1 6.2135 3.9690 -0.4459 46 1 6.7314 5.4370 0.4222 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040105712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:11 Heat of formation + Delta-G solvation = -56.777711 kcal Electronic energy + Delta-G solvation = -26159.154638 eV Core-core repulsion = 22663.487743 eV Total energy + Delta-G solvation = -3495.666895 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.27143 -38.77334 -37.24516 -35.69167 -33.23963 -32.08277 -30.86324 -30.01018 -28.71549 -26.89956 -25.96191 -25.34679 -23.84387 -22.67747 -22.03280 -20.45646 -19.29574 -18.13668 -17.25023 -16.78894 -16.39330 -15.67764 -15.42701 -15.13982 -14.74970 -14.09079 -14.00459 -13.70788 -13.55680 -13.24478 -13.12017 -12.99142 -12.61167 -12.52182 -12.28341 -12.11436 -12.04548 -11.81836 -11.52502 -11.33384 -11.13392 -10.98758 -10.88658 -10.61016 -10.40265 -10.25206 -10.15850 -9.98994 -9.83161 -9.52094 -9.41678 -9.24841 -8.46835 -8.24098 -6.68984 -5.80557 -3.20958 2.86517 2.99761 3.40268 3.44896 3.50345 3.94494 4.49961 4.57468 4.78861 4.85775 4.96333 5.05032 5.15525 5.18936 5.24358 5.40406 5.47980 5.50183 5.54135 5.61263 5.63889 5.64581 5.68713 5.78074 6.00668 6.05983 6.13643 6.16267 6.18910 6.28800 6.39339 6.47136 6.51774 6.66386 6.76257 6.83313 6.87652 6.99486 7.01738 7.27681 7.58279 7.79962 7.84698 8.43104 8.48204 9.20290 9.83742 10.39860 11.28223 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.013411 B = 0.006123 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.394591 B = 4571.720679 C = 5741.046117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.076 3.924 4 H 0.082 0.918 5 C -0.175 4.175 6 C 0.526 3.474 7 O -0.526 6.526 8 N -0.610 5.610 9 C 0.098 3.902 10 C -0.123 4.123 11 C -0.093 4.093 12 C 0.130 3.870 13 C -0.092 4.092 14 C -0.138 4.138 15 C 0.144 3.856 16 N -0.590 5.590 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.006 3.994 20 N -0.904 5.904 21 Si 0.896 3.104 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.187 3.813 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.017 0.983 43 H 0.053 0.947 44 H 0.253 0.747 45 H 0.091 0.909 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.548 1.683 5.721 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.015 3.985 4 H 0.099 0.901 5 C -0.233 4.233 6 C 0.312 3.688 7 O -0.401 6.401 8 N -0.346 5.346 9 C -0.025 4.025 10 C -0.161 4.161 11 C -0.095 4.095 12 C 0.008 3.992 13 C -0.130 4.130 14 C -0.178 4.178 15 C 0.018 3.982 16 N -0.312 5.312 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.725 3.275 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.061 3.939 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.109 0.891 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -13.248 0.890 5.722 14.459 hybrid contribution -0.087 -0.329 -0.770 0.842 sum -13.335 0.561 4.952 14.236 Atomic orbital electron populations 1.22851 0.81013 1.03018 0.99843 1.88058 1.19309 1.25513 1.94941 1.21872 0.93510 0.86253 0.96901 0.90050 1.22298 1.03130 1.03021 0.94804 1.19902 0.85935 0.82973 0.79965 1.90706 1.69489 1.29062 1.50867 1.48492 1.22011 1.06186 1.57868 1.22536 0.98416 0.81966 0.99612 1.22801 0.95968 0.98570 0.98784 1.21861 0.95332 0.93100 0.99236 1.21969 0.83535 0.97270 0.96408 1.21259 0.96668 0.99946 0.95113 1.22079 0.96616 1.00292 0.98763 1.20912 0.93962 0.97265 0.86067 1.44045 1.16144 1.58156 1.12901 1.19137 1.23659 1.09287 0.85854 0.91713 1.24948 1.00966 0.96296 0.97035 1.70004 1.47140 1.22426 1.15293 0.86464 0.78364 0.81994 0.80640 1.20884 1.21619 1.20822 1.20688 0.83627 0.95302 0.94242 0.93922 0.94043 0.89309 0.90933 0.91486 0.90238 0.90410 0.91479 0.91294 0.89717 0.92760 0.89550 0.92181 0.93391 0.93046 0.92228 0.96464 0.92882 0.93679 0.89099 0.96090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 101.05 1.09 1.39 16 2 O -0.36 -5.50 9.89 -55.09 -0.54 -6.05 16 3 C 0.08 1.08 2.48 -27.88 -0.07 1.01 16 4 H 0.08 0.90 7.27 -51.93 -0.38 0.53 16 5 C -0.17 -2.22 9.39 37.16 0.35 -1.87 16 6 C 0.53 9.74 7.24 -10.98 -0.08 9.66 16 7 O -0.53 -12.09 16.84 -14.31 -0.24 -12.33 16 8 N -0.61 -10.59 3.33 -170.51 -0.57 -11.16 16 9 C 0.10 1.35 5.04 -2.29 -0.01 1.34 16 10 C -0.12 -1.69 6.01 -24.74 -0.15 -1.84 16 11 C -0.09 -1.62 0.54 -154.08 -0.08 -1.70 16 12 C 0.13 2.48 5.04 -3.33 -0.02 2.46 16 13 C -0.09 -1.45 4.52 -27.03 -0.12 -1.57 16 14 C -0.14 -2.34 5.92 -26.55 -0.16 -2.50 16 15 C 0.14 2.94 6.49 -3.71 -0.02 2.92 16 16 N -0.59 -14.23 2.63 -172.67 -0.45 -14.68 16 17 C -0.25 -6.77 9.60 -15.06 -0.14 -6.91 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 19 C 0.01 0.16 4.92 -17.43 -0.09 0.08 16 20 N -0.90 -25.38 11.17 55.49 0.62 -24.76 16 21 Si 0.90 22.02 29.59 -169.99 -5.03 16.99 16 22 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.19 4.13 3.74 -4.03 -0.02 4.12 16 26 H 0.04 0.35 7.87 -51.93 -0.41 -0.06 16 27 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 31 H 0.08 0.96 5.55 -51.93 -0.29 0.67 16 32 H 0.08 1.14 6.91 -51.92 -0.36 0.79 16 33 H 0.07 0.71 7.33 -51.93 -0.38 0.33 16 34 H 0.07 0.83 8.02 -51.93 -0.42 0.42 16 35 H 0.08 1.10 7.98 -51.93 -0.41 0.69 16 36 H 0.05 1.02 7.61 -51.93 -0.40 0.63 16 37 H 0.09 2.02 7.56 -51.93 -0.39 1.63 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 40 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 41 H 0.06 1.08 7.28 -51.93 -0.38 0.70 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 44 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.09 2.27 5.61 -51.93 -0.29 1.98 16 46 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -32.57 352.51 -8.27 -40.84 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.85 Total: -0.74 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 0.49 Total: 6.57 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.40 Total: -50.60 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.79 Total: -18.38 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.57 -8.27 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040105712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.938 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds