Wall clock time and date at job start Fri Apr 10 2020 14:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47661 * 2 1 4 4 O 1.42904 * 109.47198 * 239.99014 * 2 1 3 5 5 C 1.42901 * 113.99568 * 90.00680 * 4 2 1 6 6 C 1.52996 * 109.47024 * 180.02562 * 5 4 2 7 7 C 1.53005 * 117.49625 * 243.74414 * 6 5 4 8 8 C 1.52999 * 117.49925 * 175.08844 * 6 5 4 9 9 C 1.50707 * 109.46797 * 119.99820 * 2 1 3 10 10 O 1.21276 * 120.00149 * 109.83257 * 9 2 1 11 11 N 1.34778 * 119.99562 * 289.82750 * 9 2 1 12 12 C 1.47024 * 125.65230 * 4.86267 * 11 9 2 13 13 C 1.54320 * 107.27424 * 181.01870 * 12 11 9 14 14 C 1.55165 * 102.93884 * 22.19688 * 13 12 11 15 15 H 1.08998 * 111.03916 * 82.58512 * 14 13 12 16 16 N 1.46500 * 110.99969 * 206.42065 * 14 13 12 17 17 C 1.46497 * 120.00118 * 52.20156 * 16 14 13 18 18 C 1.36939 * 119.99905 * 232.19404 * 16 14 13 19 19 H 1.08007 * 120.00025 * 24.01863 * 18 16 14 20 20 C 1.38813 * 120.00148 * 204.02111 * 18 16 14 21 21 N 1.31617 * 119.99814 * 13.34559 * 20 18 16 22 22 Si 1.86806 * 119.99846 * 193.34584 * 20 18 16 23 23 H 1.48499 * 109.46764 * 89.99950 * 22 20 18 24 24 H 1.48501 * 109.46715 * 209.99762 * 22 20 18 25 25 H 1.48497 * 109.47231 * 329.99972 * 22 20 18 26 26 C 1.47427 * 125.64596 * 184.82088 * 11 9 2 27 27 H 1.08996 * 109.47787 * 187.01452 * 1 2 3 28 28 H 1.09004 * 109.46842 * 307.02258 * 1 2 3 29 29 H 1.09006 * 109.46827 * 67.01661 * 1 2 3 30 30 H 1.09006 * 109.47207 * 299.99921 * 5 4 2 31 31 H 1.09001 * 109.47340 * 59.99751 * 5 4 2 32 32 H 1.09003 * 115.55619 * 29.41053 * 6 5 4 33 33 H 1.08998 * 117.49626 * 359.97438 * 7 6 5 34 34 H 1.09003 * 117.49591 * 145.01588 * 7 6 5 35 35 H 1.09001 * 117.49612 * 214.97899 * 8 6 5 36 36 H 1.08993 * 117.49974 * 359.96643 * 8 6 5 37 37 H 1.08998 * 109.88385 * 300.44393 * 12 11 9 38 38 H 1.09005 * 109.87664 * 61.60879 * 12 11 9 39 39 H 1.08996 * 110.72447 * 263.83409 * 13 12 11 40 40 H 1.08998 * 110.71599 * 140.55444 * 13 12 11 41 41 H 1.08999 * 109.47529 * 91.70831 * 17 16 14 42 42 H 1.09003 * 109.47076 * 211.70601 * 17 16 14 43 43 H 1.08998 * 109.47005 * 331.70219 * 17 16 14 44 44 H 0.97003 * 119.99686 * 180.02562 * 21 20 18 45 45 H 1.08999 * 110.36718 * 37.07380 * 26 11 9 46 46 H 1.08997 * 110.45948 * 274.79215 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6739 -1.1667 5 6 2.2002 0.1826 -2.2940 6 6 2.7080 -0.6412 -3.4790 7 6 4.1061 -0.3232 -4.0130 8 6 2.8688 0.0761 -4.8209 9 6 2.0322 -0.7104 1.2306 10 8 2.5703 -1.7925 1.1289 11 7 1.8835 -0.1430 2.4440 12 6 1.1652 1.1093 2.7223 13 6 1.2797 1.3762 4.2379 14 6 2.5351 0.5581 4.6408 15 1 3.4486 1.1152 4.4326 16 7 2.4741 0.1630 6.0502 17 6 1.2879 -0.5234 6.5678 18 6 3.5260 0.4351 6.8838 19 1 4.2045 1.2425 6.6511 20 6 3.7202 -0.3269 8.0277 21 7 3.0694 -1.4605 8.1817 22 14 4.9052 0.2568 9.3486 23 1 4.1755 1.0966 10.3321 24 1 5.4928 -0.9184 10.0406 25 1 5.9892 1.0559 8.7230 26 6 2.4134 -0.6759 3.7124 27 1 -0.3634 -1.0199 0.1255 28 1 -0.3633 0.6188 0.8205 29 1 -0.3633 0.4013 -0.9462 30 1 1.2539 0.6544 -2.5589 31 1 2.9321 0.9510 -2.0450 32 1 2.3859 -1.6824 -3.5003 33 1 4.6639 0.4732 -3.5203 34 1 4.7037 -1.1551 -4.3859 35 1 2.6528 -0.4933 -5.7249 36 1 2.6123 1.1347 -4.8596 37 1 1.6200 1.9289 2.1660 38 1 0.1168 1.0052 2.4424 39 1 0.3967 1.0105 4.7617 40 1 1.4326 2.4378 4.4319 41 1 1.4281 -1.6014 6.4881 42 1 1.1387 -0.2528 7.6131 43 1 0.4143 -0.2267 5.9875 44 1 3.2048 -1.9927 8.9813 45 1 3.3919 -1.1293 3.5540 46 1 1.7229 -1.4040 4.1378 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189231232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:49 Heat of formation + Delta-G solvation = -22.835702 kcal Electronic energy + Delta-G solvation = -24387.964384 eV Core-core repulsion = 20893.769325 eV Total energy + Delta-G solvation = -3494.195059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.06713 -38.58219 -37.44436 -36.49865 -34.84189 -32.22221 -31.13230 -29.71387 -27.85329 -27.32733 -26.06804 -24.74632 -22.82933 -22.67828 -22.21129 -21.04469 -19.34484 -19.14563 -17.44035 -17.07237 -16.59631 -16.07538 -15.93338 -15.46973 -14.80167 -14.68789 -14.21060 -14.19381 -13.60015 -13.30022 -13.18777 -13.04181 -12.74872 -12.44716 -12.32430 -12.25950 -11.94124 -11.83832 -11.68872 -11.46666 -11.19394 -10.93862 -10.83955 -10.75677 -10.55258 -10.53133 -10.44294 -10.26491 -9.91567 -9.88920 -9.81203 -9.31061 -8.60748 -8.30654 -6.82256 -5.79483 -3.27088 2.77717 2.82785 3.35873 3.41714 3.43735 3.44564 3.76793 4.42607 4.47068 4.55247 4.58826 4.72732 4.77478 4.90283 4.96278 5.02604 5.13242 5.17699 5.27438 5.30976 5.34985 5.39481 5.49664 5.50502 5.59215 5.63244 5.76208 5.79482 5.86055 5.92319 5.97485 5.99747 6.27001 6.37892 6.51677 6.60922 6.78450 6.85693 6.99025 7.30034 7.66106 7.75949 7.80036 8.33089 8.41811 9.16153 9.78169 10.27467 11.25780 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.002840 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.433918 B = 9856.450754 C =10245.027205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.077 3.923 3 H 0.082 0.918 4 O -0.354 6.354 5 C 0.091 3.909 6 C -0.152 4.152 7 C -0.177 4.177 8 C -0.175 4.175 9 C 0.525 3.475 10 O -0.524 6.524 11 N -0.613 5.613 12 C 0.099 3.901 13 C -0.154 4.154 14 C 0.173 3.827 15 H 0.078 0.922 16 N -0.583 5.583 17 C 0.158 3.842 18 C -0.263 4.263 19 H 0.070 0.930 20 C 0.006 3.994 21 N -0.903 5.903 22 Si 0.908 3.092 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.088 3.912 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.028 0.972 42 H 0.048 0.952 43 H 0.003 0.997 44 H 0.254 0.746 45 H 0.071 0.929 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.917 7.760 -20.465 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 H 0.100 0.900 4 O -0.272 6.272 5 C 0.014 3.986 6 C -0.170 4.170 7 C -0.214 4.214 8 C -0.212 4.212 9 C 0.312 3.688 10 O -0.399 6.399 11 N -0.349 5.349 12 C -0.024 4.024 13 C -0.194 4.194 14 C 0.062 3.938 15 H 0.096 0.904 16 N -0.304 5.304 17 C 0.013 3.987 18 C -0.392 4.392 19 H 0.088 0.912 20 C -0.194 4.194 21 N -0.546 5.546 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.036 4.036 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.022 0.978 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.561 6.795 -20.413 22.222 hybrid contribution 0.519 0.443 0.733 1.001 sum -5.042 7.238 -19.681 21.567 Atomic orbital electron populations 1.22293 0.93702 1.03959 1.03109 1.21835 0.95071 0.96009 0.85556 0.90022 1.88049 1.86493 1.33934 1.18738 1.22105 0.99127 0.92001 0.85379 1.22109 1.00516 1.01140 0.93221 1.23087 0.90862 1.03641 1.03762 1.22986 1.02678 1.01027 0.94493 1.19925 0.79931 0.85887 0.83103 1.90718 1.43059 1.20471 1.85636 1.48481 1.54620 1.24979 1.06853 1.22166 0.96043 0.86054 0.98133 1.23188 1.02167 1.01601 0.92418 1.21474 0.95479 0.91914 0.84920 0.90411 1.43858 1.16408 1.67874 1.02223 1.20825 0.85053 0.96005 0.96778 1.19219 1.06245 1.11002 1.02761 0.91208 1.25086 0.98908 0.95195 1.00170 1.70070 1.44660 1.12158 1.27745 0.86213 0.80562 0.77633 0.81853 1.21403 1.21692 1.20406 1.23166 0.99214 0.99424 0.81796 0.91149 0.90469 0.91328 0.92771 0.93088 0.86671 0.88617 0.88516 0.88412 0.88707 0.91968 0.91718 0.90172 0.90498 0.95386 0.93373 0.97848 0.93552 0.91004 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.35 37.15 0.35 -1.40 16 2 C 0.08 0.98 2.55 -27.88 -0.07 0.90 16 3 H 0.08 0.84 7.60 -51.93 -0.39 0.44 16 4 O -0.35 -4.98 9.54 -54.93 -0.52 -5.50 16 5 C 0.09 0.91 6.03 37.16 0.22 1.13 16 6 C -0.15 -1.44 6.05 -90.62 -0.55 -1.99 16 7 C -0.18 -1.48 10.18 -26.69 -0.27 -1.75 16 8 C -0.17 -1.24 10.25 -26.70 -0.27 -1.51 16 9 C 0.53 9.05 7.19 -10.98 -0.08 8.97 16 10 O -0.52 -11.50 16.83 -14.14 -0.24 -11.74 16 11 N -0.61 -10.04 3.33 -170.52 -0.57 -10.61 16 12 C 0.10 1.25 5.99 -3.06 -0.02 1.23 16 13 C -0.15 -2.31 6.49 -24.89 -0.16 -2.48 16 14 C 0.17 3.38 3.55 -65.78 -0.23 3.14 16 15 H 0.08 1.53 7.95 -51.93 -0.41 1.12 16 16 N -0.58 -14.03 2.95 -171.03 -0.51 -14.54 16 17 C 0.16 3.73 7.91 59.85 0.47 4.20 16 18 C -0.26 -7.01 9.60 -15.06 -0.14 -7.15 16 19 H 0.07 1.81 7.85 -52.48 -0.41 1.40 16 20 C 0.01 0.15 5.06 -17.43 -0.09 0.07 16 21 N -0.90 -25.97 10.82 55.49 0.60 -25.37 16 22 Si 0.91 21.50 29.57 -169.99 -5.03 16.47 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.09 1.74 6.49 -2.53 -0.02 1.72 16 27 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 28 H 0.08 0.67 5.49 -51.93 -0.29 0.38 16 29 H 0.07 0.55 7.76 -51.93 -0.40 0.15 16 30 H 0.05 0.44 7.76 -51.93 -0.40 0.04 16 31 H 0.05 0.47 7.82 -51.93 -0.41 0.06 16 32 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.65 8.01 -51.93 -0.42 0.23 16 38 H 0.06 0.68 6.03 -51.93 -0.31 0.37 16 39 H 0.08 1.25 5.95 -51.93 -0.31 0.95 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.03 0.73 7.51 -51.93 -0.39 0.34 16 42 H 0.05 1.23 7.19 -51.93 -0.37 0.85 16 43 H 0.00 0.06 5.93 -51.93 -0.31 -0.24 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.07 1.57 8.09 -51.93 -0.42 1.15 16 46 H 0.07 1.45 7.31 -51.93 -0.38 1.07 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -32.48 364.47 -9.34 -41.83 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.71 Total: -1.14 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -0.86 Total: 5.10 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.47 Total: -50.51 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.76 Total: -17.24 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.48 -9.34 -41.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189231232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.991 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds