Wall clock time and date at job start Fri Apr 10 2020 14:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47661 * 2 1 4 4 O 1.42904 * 109.47198 * 239.99014 * 2 1 3 5 5 C 1.42901 * 113.99568 * 90.00680 * 4 2 1 6 6 C 1.52996 * 109.47024 * 180.02562 * 5 4 2 7 7 C 1.53005 * 117.49625 * 243.74414 * 6 5 4 8 8 C 1.52999 * 117.49925 * 175.08844 * 6 5 4 9 9 C 1.50707 * 109.46797 * 119.99820 * 2 1 3 10 10 O 1.21276 * 120.00149 * 109.83257 * 9 2 1 11 11 N 1.34778 * 119.99562 * 289.82750 * 9 2 1 12 12 C 1.47024 * 125.65230 * 4.86267 * 11 9 2 13 13 C 1.54320 * 107.27424 * 181.01870 * 12 11 9 14 14 C 1.55165 * 102.93884 * 22.19688 * 13 12 11 15 15 H 1.08998 * 111.03916 * 82.58512 * 14 13 12 16 16 N 1.46500 * 110.99969 * 206.42065 * 14 13 12 17 17 C 1.46497 * 120.00118 * 52.20156 * 16 14 13 18 18 C 1.36939 * 119.99905 * 232.19404 * 16 14 13 19 19 H 1.08007 * 120.00025 * 24.01863 * 18 16 14 20 20 C 1.38813 * 120.00148 * 204.02111 * 18 16 14 21 21 N 1.31617 * 119.99814 * 13.34559 * 20 18 16 22 22 Si 1.86806 * 119.99846 * 193.34584 * 20 18 16 23 23 H 1.48499 * 109.46764 * 89.99950 * 22 20 18 24 24 H 1.48501 * 109.46715 * 209.99762 * 22 20 18 25 25 H 1.48497 * 109.47231 * 329.99972 * 22 20 18 26 26 C 1.47427 * 125.64596 * 184.82088 * 11 9 2 27 27 H 1.08996 * 109.47787 * 187.01452 * 1 2 3 28 28 H 1.09004 * 109.46842 * 307.02258 * 1 2 3 29 29 H 1.09006 * 109.46827 * 67.01661 * 1 2 3 30 30 H 1.09006 * 109.47207 * 299.99921 * 5 4 2 31 31 H 1.09001 * 109.47340 * 59.99751 * 5 4 2 32 32 H 1.09003 * 115.55619 * 29.41053 * 6 5 4 33 33 H 1.08998 * 117.49626 * 359.97438 * 7 6 5 34 34 H 1.09003 * 117.49591 * 145.01588 * 7 6 5 35 35 H 1.09001 * 117.49612 * 214.97899 * 8 6 5 36 36 H 1.08993 * 117.49974 * 359.96643 * 8 6 5 37 37 H 1.08998 * 109.88385 * 300.44393 * 12 11 9 38 38 H 1.09005 * 109.87664 * 61.60879 * 12 11 9 39 39 H 1.08996 * 110.72447 * 263.83409 * 13 12 11 40 40 H 1.08998 * 110.71599 * 140.55444 * 13 12 11 41 41 H 1.08999 * 109.47529 * 91.70831 * 17 16 14 42 42 H 1.09003 * 109.47076 * 211.70601 * 17 16 14 43 43 H 1.08998 * 109.47005 * 331.70219 * 17 16 14 44 44 H 0.97003 * 119.99686 * 180.02562 * 21 20 18 45 45 H 1.08999 * 110.36718 * 37.07380 * 26 11 9 46 46 H 1.08997 * 110.45948 * 274.79215 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6739 -1.1667 5 6 2.2002 0.1826 -2.2940 6 6 2.7080 -0.6412 -3.4790 7 6 4.1061 -0.3232 -4.0130 8 6 2.8688 0.0761 -4.8209 9 6 2.0322 -0.7104 1.2306 10 8 2.5703 -1.7925 1.1289 11 7 1.8835 -0.1430 2.4440 12 6 1.1652 1.1093 2.7223 13 6 1.2797 1.3762 4.2379 14 6 2.5351 0.5581 4.6408 15 1 3.4486 1.1152 4.4326 16 7 2.4741 0.1630 6.0502 17 6 1.2879 -0.5234 6.5678 18 6 3.5260 0.4351 6.8838 19 1 4.2045 1.2425 6.6511 20 6 3.7202 -0.3269 8.0277 21 7 3.0694 -1.4605 8.1817 22 14 4.9052 0.2568 9.3486 23 1 4.1755 1.0966 10.3321 24 1 5.4928 -0.9184 10.0406 25 1 5.9892 1.0559 8.7230 26 6 2.4134 -0.6759 3.7124 27 1 -0.3634 -1.0199 0.1255 28 1 -0.3633 0.6188 0.8205 29 1 -0.3633 0.4013 -0.9462 30 1 1.2539 0.6544 -2.5589 31 1 2.9321 0.9510 -2.0450 32 1 2.3859 -1.6824 -3.5003 33 1 4.6639 0.4732 -3.5203 34 1 4.7037 -1.1551 -4.3859 35 1 2.6528 -0.4933 -5.7249 36 1 2.6123 1.1347 -4.8596 37 1 1.6200 1.9289 2.1660 38 1 0.1168 1.0052 2.4424 39 1 0.3967 1.0105 4.7617 40 1 1.4326 2.4378 4.4319 41 1 1.4281 -1.6014 6.4881 42 1 1.1387 -0.2528 7.6131 43 1 0.4143 -0.2267 5.9875 44 1 3.2048 -1.9927 8.9813 45 1 3.3919 -1.1293 3.5540 46 1 1.7229 -1.4040 4.1378 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189231232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:48 Heat of formation + Delta-G solvation = -42.670710 kcal Electronic energy + Delta-G solvation = -24388.824495 eV Core-core repulsion = 20893.769325 eV Total energy + Delta-G solvation = -3495.055169 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.34510 -39.59650 -38.71256 -37.42344 -36.58802 -33.73537 -32.50096 -31.13005 -29.32408 -28.07763 -28.05438 -26.04640 -24.45037 -23.41477 -23.25443 -21.75704 -20.96925 -20.36789 -18.95189 -18.48685 -17.72151 -17.49916 -16.94560 -16.70043 -16.22221 -15.84841 -15.59556 -15.15776 -14.90123 -14.81075 -14.53529 -14.23997 -14.08394 -13.83891 -13.68475 -13.33109 -13.23552 -12.99256 -12.78461 -12.64259 -12.48508 -12.39149 -12.38030 -12.15971 -12.03133 -11.97526 -11.81710 -11.41723 -11.34410 -11.28797 -10.89386 -10.64220 -10.39899 -9.69596 -8.80095 -7.86075 -5.36027 1.47018 1.47826 1.50939 1.57113 1.65682 2.49002 2.65183 2.97907 3.26675 3.41895 3.55670 3.82023 3.89512 3.89788 3.95383 4.02877 4.05258 4.14932 4.21641 4.30486 4.33780 4.44856 4.47786 4.59786 4.67425 4.75403 4.77357 4.79344 4.80673 4.87424 5.00678 5.03904 5.17052 5.20046 5.21059 5.23881 5.25360 5.31429 5.44113 5.63601 5.69737 6.12325 6.30793 6.53338 7.08633 7.12464 7.82517 8.26876 9.17526 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.028264 B = 0.002840 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.433918 B = 9856.450754 C =10245.027205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.084 3.916 3 H 0.117 0.883 4 O -0.390 6.390 5 C 0.087 3.913 6 C -0.176 4.176 7 C -0.188 4.188 8 C -0.150 4.150 9 C 0.515 3.485 10 O -0.587 6.587 11 N -0.610 5.610 12 C 0.099 3.901 13 C -0.139 4.139 14 C 0.166 3.834 15 H 0.076 0.924 16 N -0.600 5.600 17 C 0.175 3.825 18 C -0.267 4.267 19 H 0.076 0.924 20 C -0.053 4.053 21 N -0.938 5.938 22 Si 0.972 3.028 23 H -0.282 1.282 24 H -0.299 1.299 25 H -0.267 1.267 26 C 0.097 3.903 27 H 0.047 0.953 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.101 0.899 41 H -0.007 1.007 42 H 0.022 0.978 43 H 0.041 0.959 44 H 0.248 0.752 45 H 0.035 0.965 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.090 11.342 -22.524 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.023 3.977 3 H 0.134 0.866 4 O -0.309 6.309 5 C 0.012 3.988 6 C -0.194 4.194 7 C -0.225 4.225 8 C -0.187 4.187 9 C 0.305 3.695 10 O -0.466 6.466 11 N -0.345 5.345 12 C -0.022 4.022 13 C -0.178 4.178 14 C 0.057 3.943 15 H 0.094 0.906 16 N -0.321 5.321 17 C 0.030 3.970 18 C -0.397 4.397 19 H 0.094 0.906 20 C -0.248 4.248 21 N -0.584 5.584 22 Si 0.800 3.200 23 H -0.209 1.209 24 H -0.226 1.226 25 H -0.192 1.192 26 C -0.029 4.029 27 H 0.066 0.934 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.011 0.989 42 H 0.041 0.959 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.759 10.447 -22.515 25.724 hybrid contribution 0.908 -0.687 1.273 1.708 sum -5.850 9.760 -21.242 24.097 Atomic orbital electron populations 1.22296 0.91315 1.03287 1.05499 1.21903 0.96585 0.96292 0.82871 0.86550 1.88023 1.86916 1.36051 1.19960 1.22323 1.00701 0.91711 0.84095 1.22144 1.01627 1.00757 0.94875 1.23176 0.90965 1.03891 1.04470 1.23082 1.00392 1.01831 0.93403 1.21007 0.78717 0.85375 0.84446 1.90684 1.45906 1.23441 1.86587 1.48516 1.54392 1.26016 1.05539 1.22480 0.97937 0.85089 0.96701 1.23066 0.98807 1.01974 0.93983 1.21646 0.98103 0.92123 0.82458 0.90603 1.44058 1.15947 1.68000 1.04075 1.20533 0.86513 0.93940 0.96011 1.19601 1.06442 1.10595 1.03069 0.90616 1.25884 1.01004 0.95468 1.02481 1.70248 1.46649 1.13482 1.28049 0.85198 0.78808 0.76796 0.79212 1.20858 1.22638 1.19169 1.22735 0.96997 0.99109 0.84009 0.93376 0.88393 0.88536 0.90240 0.92151 0.88543 0.88319 0.88730 0.87419 0.86927 0.88064 0.88397 0.90599 0.88015 0.98904 0.95876 0.94119 0.94248 0.94594 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.35 71.98 0.67 -2.05 16 2 C 0.08 1.91 2.55 29.85 0.08 1.99 16 3 H 0.12 1.81 7.60 -2.39 -0.02 1.80 16 4 O -0.39 -10.48 9.54 -130.14 -1.24 -11.72 16 5 C 0.09 1.54 6.03 71.98 0.43 1.97 16 6 C -0.18 -3.13 6.05 -10.79 -0.07 -3.19 16 7 C -0.19 -2.92 10.18 30.62 0.31 -2.61 16 8 C -0.15 -1.75 10.25 30.62 0.31 -1.44 16 9 C 0.52 17.48 7.19 87.66 0.63 18.11 16 10 O -0.59 -26.89 16.83 15.82 0.27 -26.62 16 11 N -0.61 -19.15 3.33 -811.79 -2.70 -21.85 16 12 C 0.10 2.05 5.99 86.73 0.52 2.57 16 13 C -0.14 -3.70 6.49 31.78 0.21 -3.49 16 14 C 0.17 6.36 3.55 46.39 0.16 6.53 16 15 H 0.08 2.92 7.95 -2.39 -0.02 2.90 16 16 N -0.60 -29.12 2.95 -695.01 -2.05 -31.18 16 17 C 0.17 8.44 7.91 127.77 1.01 9.46 16 18 C -0.27 -14.36 9.60 84.03 0.81 -13.55 16 19 H 0.08 3.90 7.85 -2.91 -0.02 3.88 16 20 C -0.05 -2.96 5.06 84.86 0.43 -2.53 16 21 N -0.94 -56.05 10.82 21.65 0.23 -55.82 16 22 Si 0.97 44.84 29.57 68.60 2.03 46.87 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 C 0.10 3.94 6.49 86.85 0.56 4.50 16 27 H 0.05 1.01 8.13 -2.39 -0.02 1.00 16 28 H 0.10 1.16 5.49 -2.38 -0.01 1.15 16 29 H 0.10 1.08 7.76 -2.38 -0.02 1.06 16 30 H 0.08 0.96 7.76 -2.38 -0.02 0.95 16 31 H 0.06 0.93 7.82 -2.39 -0.02 0.91 16 32 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.10 1.45 8.03 -2.39 -0.02 1.43 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 1.44 8.01 -2.39 -0.02 1.42 16 38 H 0.10 1.49 6.03 -2.38 -0.01 1.47 16 39 H 0.08 2.11 5.95 -2.39 -0.01 2.10 16 40 H 0.10 2.27 8.14 -2.39 -0.02 2.26 16 41 H -0.01 -0.41 7.51 -2.39 -0.02 -0.42 16 42 H 0.02 1.19 7.19 -2.39 -0.02 1.18 16 43 H 0.04 1.62 5.93 -2.39 -0.01 1.61 16 44 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 45 H 0.04 1.67 8.09 -2.39 -0.02 1.65 16 46 H 0.04 1.98 7.31 -2.39 -0.02 1.96 16 Total: -1.00 -76.62 364.47 3.56 -73.06 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.95 Total: 11.00 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 6.07 Total: 16.26 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -4.52 Total: -108.84 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.98 Total: -38.34 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -76.62 3.56 -73.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189231232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.387 kcal (2) G-P(sol) polarization free energy of solvation -76.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds