Wall clock time and date at job start Fri Apr 10 2020 14:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47671 * 2 1 4 4 O 1.42904 * 109.46788 * 119.99882 * 2 1 3 5 5 C 1.42902 * 113.99767 * 269.99993 * 4 2 1 6 6 C 1.52997 * 109.46864 * 180.02562 * 5 4 2 7 7 C 1.53007 * 117.49729 * 243.74215 * 6 5 4 8 8 C 1.53005 * 117.49737 * 175.08873 * 6 5 4 9 9 C 1.50696 * 109.47339 * 239.99686 * 2 1 3 10 10 O 1.21287 * 119.99928 * 256.38434 * 9 2 1 11 11 N 1.34774 * 120.00434 * 76.38238 * 9 2 1 12 12 C 1.47429 * 125.64421 * 355.53039 * 11 9 2 13 13 C 1.54906 * 104.83269 * 204.09175 * 12 11 9 14 14 C 1.55162 * 101.58313 * 322.99278 * 13 12 11 15 15 H 1.09004 * 110.86756 * 277.06794 * 14 13 12 16 16 N 1.46494 * 110.71925 * 153.86553 * 14 13 12 17 17 C 1.46499 * 120.00258 * 306.47243 * 16 14 13 18 18 C 1.36940 * 120.00339 * 126.47731 * 16 14 13 19 19 H 1.07999 * 119.99833 * 329.14805 * 18 16 14 20 20 C 1.38810 * 120.00246 * 149.41389 * 18 16 14 21 21 N 1.31619 * 119.99842 * 2.18563 * 20 18 16 22 22 Si 1.86798 * 120.00052 * 182.18890 * 20 18 16 23 23 H 1.48503 * 109.46959 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46950 * 120.00022 * 22 20 18 25 25 H 1.48497 * 109.47163 * 240.00091 * 22 20 18 26 26 C 1.47024 * 125.65300 * 175.48883 * 11 9 2 27 27 H 1.08998 * 109.47472 * 185.07361 * 1 2 3 28 28 H 1.08998 * 109.47139 * 305.08262 * 1 2 3 29 29 H 1.09007 * 109.46566 * 65.07345 * 1 2 3 30 30 H 1.09008 * 109.46831 * 299.99461 * 5 4 2 31 31 H 1.08994 * 109.47327 * 59.99816 * 5 4 2 32 32 H 1.08999 * 115.55664 * 29.41569 * 6 5 4 33 33 H 1.08998 * 117.49445 * 0.02562 * 7 6 5 34 34 H 1.09004 * 117.49778 * 145.02031 * 7 6 5 35 35 H 1.09000 * 117.49576 * 214.97772 * 8 6 5 36 36 H 1.08996 * 117.49925 * 359.96782 * 8 6 5 37 37 H 1.08994 * 110.36595 * 322.93204 * 12 11 9 38 38 H 1.09007 * 110.36689 * 85.14417 * 12 11 9 39 39 H 1.09001 * 111.00700 * 204.92071 * 13 12 11 40 40 H 1.09001 * 111.00627 * 81.06543 * 13 12 11 41 41 H 1.08997 * 109.47655 * 273.97862 * 17 16 14 42 42 H 1.09010 * 109.46771 * 33.97339 * 17 16 14 43 43 H 1.08996 * 109.47294 * 153.97131 * 17 16 14 44 44 H 0.97001 * 119.99424 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.88228 * 59.56337 * 26 11 9 46 46 H 1.08994 * 110.01265 * 298.46451 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1999 0.1830 2.2941 6 6 2.7089 -0.6405 3.4789 7 6 1.8122 -0.7280 4.7156 8 6 3.0888 0.1157 4.7536 9 6 2.0324 -0.7104 -1.2304 10 8 2.4676 -1.8392 -1.1436 11 7 1.9980 -0.0917 -2.4272 12 6 1.4131 1.2355 -2.6917 13 6 1.0624 1.2208 -4.2004 14 6 2.2487 0.4117 -4.7882 15 1 3.1146 1.0539 -4.9497 16 7 1.8572 -0.2507 -6.0348 17 6 0.6715 -1.1105 -6.0664 18 6 2.5996 -0.0662 -7.1706 19 1 3.1203 0.8664 -7.3298 20 6 2.6785 -1.0759 -8.1199 21 7 2.0052 -2.1939 -7.9489 22 14 3.7401 -0.8481 -9.6399 23 1 4.3895 0.4866 -9.5945 24 1 4.7831 -1.9045 -9.6780 25 1 2.8922 -0.9455 -10.8550 26 6 2.5382 -0.6279 -3.6850 27 1 -0.3634 -1.0236 0.0909 28 1 -0.3633 0.5906 0.8409 29 1 -0.3633 0.4332 -0.9320 30 1 2.9320 0.9513 2.0450 31 1 1.2537 0.6548 2.5588 32 1 3.2981 -1.5205 3.2213 33 1 0.8595 -0.1992 4.6848 34 1 1.8118 -1.6655 5.2717 35 1 3.9278 -0.2671 5.3347 36 1 2.9767 1.1999 4.7479 37 1 0.5128 1.3792 -2.0943 38 1 2.1391 2.0197 -2.4769 39 1 1.0402 2.2322 -4.6063 40 1 0.1157 0.7100 -4.3766 41 1 0.9457 -2.1192 -5.7576 42 1 -0.0826 -0.7146 -5.3860 43 1 0.2690 -1.1373 -7.0790 44 1 2.0600 -2.8993 -8.6125 45 1 2.0481 -1.5710 -3.9267 46 1 3.6134 -0.7818 -3.5936 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189231233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:52 Heat of formation + Delta-G solvation = -22.661988 kcal Electronic energy + Delta-G solvation = -24429.508584 eV Core-core repulsion = 20935.321058 eV Total energy + Delta-G solvation = -3494.187526 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.04929 -38.58192 -37.43722 -36.49093 -34.79834 -32.18786 -31.15561 -29.69481 -27.85124 -27.31663 -26.04178 -24.69722 -22.81398 -22.65085 -22.27692 -21.04517 -19.33592 -19.07402 -17.47587 -17.07152 -16.65387 -16.07246 -15.64904 -15.51236 -14.89688 -14.70886 -14.46756 -14.06655 -13.50597 -13.37742 -13.19926 -12.82980 -12.73350 -12.57587 -12.28835 -12.08743 -11.90129 -11.77517 -11.71621 -11.47686 -11.16634 -10.90446 -10.86413 -10.76779 -10.60150 -10.55518 -10.38243 -10.27788 -9.94839 -9.85441 -9.83377 -9.30887 -8.54475 -8.27520 -6.73353 -5.82051 -3.33720 2.76032 2.87132 3.34620 3.41755 3.43632 3.44458 3.75784 4.42062 4.45595 4.56083 4.56705 4.72748 4.78057 4.90537 4.97059 5.01192 5.17098 5.20270 5.26975 5.29617 5.35122 5.41396 5.47986 5.55013 5.55751 5.63904 5.74985 5.77100 5.89923 5.92142 5.98051 6.03958 6.33369 6.37776 6.53028 6.66762 6.87364 6.88995 6.99883 7.38090 7.72663 7.77900 7.81728 8.38680 8.44198 9.18519 9.77507 10.30494 11.23732 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.035600 B = 0.002760 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.332315 B =10143.839248 C =10316.649190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.078 3.922 3 H 0.081 0.919 4 O -0.354 6.354 5 C 0.091 3.909 6 C -0.152 4.152 7 C -0.177 4.177 8 C -0.174 4.174 9 C 0.524 3.476 10 O -0.524 6.524 11 N -0.612 5.612 12 C 0.095 3.905 13 C -0.154 4.154 14 C 0.173 3.827 15 H 0.079 0.921 16 N -0.586 5.586 17 C 0.160 3.840 18 C -0.265 4.265 19 H 0.069 0.931 20 C 0.011 3.989 21 N -0.901 5.901 22 Si 0.906 3.094 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.289 1.289 26 C 0.088 3.912 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.018 0.982 42 H -0.005 1.005 43 H 0.062 0.938 44 H 0.255 0.745 45 H 0.073 0.927 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.166 9.617 20.522 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.016 3.984 3 H 0.098 0.902 4 O -0.272 6.272 5 C 0.014 3.986 6 C -0.170 4.170 7 C -0.214 4.214 8 C -0.212 4.212 9 C 0.311 3.689 10 O -0.399 6.399 11 N -0.348 5.348 12 C -0.028 4.028 13 C -0.193 4.193 14 C 0.062 3.938 15 H 0.097 0.903 16 N -0.306 5.306 17 C 0.015 3.985 18 C -0.394 4.394 19 H 0.087 0.913 20 C -0.189 4.189 21 N -0.545 5.545 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.216 1.216 26 C -0.036 4.036 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.036 0.964 42 H 0.014 0.986 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.907 8.583 20.489 22.404 hybrid contribution 0.531 0.234 -0.786 0.977 sum -2.376 8.817 19.704 21.717 Atomic orbital electron populations 1.22276 0.93618 1.04048 1.03001 1.21841 0.95158 0.95897 0.85493 0.90152 1.88056 1.86522 1.33948 1.18704 1.22102 0.98923 0.92056 0.85526 1.22130 1.04071 1.02529 0.88288 1.23079 0.94882 1.02137 1.01308 1.22986 0.99357 0.98802 1.00007 1.19935 0.79422 0.86443 0.83143 1.90718 1.45937 1.17994 1.85249 1.48508 1.58654 1.19509 1.08125 1.22460 0.97501 0.84712 0.98158 1.23323 1.01930 1.01727 0.92360 1.21397 0.94729 0.91961 0.85696 0.90330 1.43850 1.27726 1.55077 1.03984 1.20848 0.86049 0.92291 0.99266 1.19216 1.26067 0.97807 0.96318 0.91345 1.25304 0.98585 0.95133 0.99851 1.70051 1.42612 1.06277 1.35543 0.86176 0.80263 0.77600 0.82457 1.20183 1.21458 1.21613 1.22918 0.98319 1.00302 0.82096 0.90828 0.91485 0.90522 0.92809 0.93048 0.86592 0.88687 0.88572 0.88373 0.88685 0.91141 0.91639 0.90391 0.90248 0.96396 0.98647 0.91938 0.93510 0.90843 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 9.36 37.16 0.35 -1.46 16 2 C 0.08 1.00 2.48 -27.89 -0.07 0.93 16 3 H 0.08 0.82 7.53 -51.93 -0.39 0.43 16 4 O -0.35 -5.01 9.57 -54.59 -0.52 -5.53 16 5 C 0.09 0.91 6.03 37.16 0.22 1.13 16 6 C -0.15 -1.44 6.05 -90.62 -0.55 -1.99 16 7 C -0.18 -1.36 10.18 -26.69 -0.27 -1.63 16 8 C -0.17 -1.24 10.25 -26.69 -0.27 -1.51 16 9 C 0.52 9.16 7.13 -10.99 -0.08 9.08 16 10 O -0.52 -11.66 16.91 -13.81 -0.23 -11.89 16 11 N -0.61 -10.15 3.33 -170.52 -0.57 -10.72 16 12 C 0.09 1.20 6.43 -2.53 -0.02 1.19 16 13 C -0.15 -2.34 6.61 -24.58 -0.16 -2.50 16 14 C 0.17 3.37 3.45 -66.10 -0.23 3.15 16 15 H 0.08 1.51 7.95 -51.93 -0.41 1.09 16 16 N -0.59 -14.21 2.93 -171.39 -0.50 -14.71 16 17 C 0.16 3.88 8.02 59.85 0.48 4.36 16 18 C -0.26 -7.04 9.54 -15.06 -0.14 -7.18 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C 0.01 0.29 5.31 -17.43 -0.09 0.20 16 21 N -0.90 -25.96 10.53 55.49 0.58 -25.37 16 22 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.09 1.75 6.51 -3.06 -0.02 1.73 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.54 7.99 -51.93 -0.41 0.12 16 29 H 0.08 0.75 5.82 -51.92 -0.30 0.44 16 30 H 0.05 0.48 8.09 -51.92 -0.42 0.06 16 31 H 0.05 0.42 7.73 -51.93 -0.40 0.02 16 32 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.09 0.65 8.03 -51.93 -0.42 0.24 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.72 5.49 -51.93 -0.29 0.43 16 38 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.30 6.00 -51.93 -0.31 0.99 16 41 H 0.02 0.47 7.40 -51.93 -0.38 0.09 16 42 H 0.00 -0.10 5.99 -51.92 -0.31 -0.41 16 43 H 0.06 1.65 6.82 -51.93 -0.35 1.30 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.07 1.70 6.91 -51.93 -0.36 1.34 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -32.58 364.52 -9.32 -41.90 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -7.69 Total: -1.02 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.85 Total: 5.48 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.48 Total: -50.81 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.76 Total: -17.43 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.58 -9.32 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189231233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.234 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds