Wall clock time and date at job start Fri Apr 10 2020 14:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47671 * 2 1 4 4 O 1.42904 * 109.46788 * 119.99882 * 2 1 3 5 5 C 1.42902 * 113.99767 * 269.99993 * 4 2 1 6 6 C 1.52997 * 109.46864 * 180.02562 * 5 4 2 7 7 C 1.53007 * 117.49729 * 243.74215 * 6 5 4 8 8 C 1.53005 * 117.49737 * 175.08873 * 6 5 4 9 9 C 1.50696 * 109.47339 * 239.99686 * 2 1 3 10 10 O 1.21287 * 119.99928 * 256.38434 * 9 2 1 11 11 N 1.34774 * 120.00434 * 76.38238 * 9 2 1 12 12 C 1.47429 * 125.64421 * 355.53039 * 11 9 2 13 13 C 1.54906 * 104.83269 * 204.09175 * 12 11 9 14 14 C 1.55162 * 101.58313 * 322.99278 * 13 12 11 15 15 H 1.09004 * 110.86756 * 277.06794 * 14 13 12 16 16 N 1.46494 * 110.71925 * 153.86553 * 14 13 12 17 17 C 1.46499 * 120.00258 * 306.47243 * 16 14 13 18 18 C 1.36940 * 120.00339 * 126.47731 * 16 14 13 19 19 H 1.07999 * 119.99833 * 329.14805 * 18 16 14 20 20 C 1.38810 * 120.00246 * 149.41389 * 18 16 14 21 21 N 1.31619 * 119.99842 * 2.18563 * 20 18 16 22 22 Si 1.86798 * 120.00052 * 182.18890 * 20 18 16 23 23 H 1.48503 * 109.46959 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46950 * 120.00022 * 22 20 18 25 25 H 1.48497 * 109.47163 * 240.00091 * 22 20 18 26 26 C 1.47024 * 125.65300 * 175.48883 * 11 9 2 27 27 H 1.08998 * 109.47472 * 185.07361 * 1 2 3 28 28 H 1.08998 * 109.47139 * 305.08262 * 1 2 3 29 29 H 1.09007 * 109.46566 * 65.07345 * 1 2 3 30 30 H 1.09008 * 109.46831 * 299.99461 * 5 4 2 31 31 H 1.08994 * 109.47327 * 59.99816 * 5 4 2 32 32 H 1.08999 * 115.55664 * 29.41569 * 6 5 4 33 33 H 1.08998 * 117.49445 * 0.02562 * 7 6 5 34 34 H 1.09004 * 117.49778 * 145.02031 * 7 6 5 35 35 H 1.09000 * 117.49576 * 214.97772 * 8 6 5 36 36 H 1.08996 * 117.49925 * 359.96782 * 8 6 5 37 37 H 1.08994 * 110.36595 * 322.93204 * 12 11 9 38 38 H 1.09007 * 110.36689 * 85.14417 * 12 11 9 39 39 H 1.09001 * 111.00700 * 204.92071 * 13 12 11 40 40 H 1.09001 * 111.00627 * 81.06543 * 13 12 11 41 41 H 1.08997 * 109.47655 * 273.97862 * 17 16 14 42 42 H 1.09010 * 109.46771 * 33.97339 * 17 16 14 43 43 H 1.08996 * 109.47294 * 153.97131 * 17 16 14 44 44 H 0.97001 * 119.99424 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.88228 * 59.56337 * 26 11 9 46 46 H 1.08994 * 110.01265 * 298.46451 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1999 0.1830 2.2941 6 6 2.7089 -0.6405 3.4789 7 6 1.8122 -0.7280 4.7156 8 6 3.0888 0.1157 4.7536 9 6 2.0324 -0.7104 -1.2304 10 8 2.4676 -1.8392 -1.1436 11 7 1.9980 -0.0917 -2.4272 12 6 1.4131 1.2355 -2.6917 13 6 1.0624 1.2208 -4.2004 14 6 2.2487 0.4117 -4.7882 15 1 3.1146 1.0539 -4.9497 16 7 1.8572 -0.2507 -6.0348 17 6 0.6715 -1.1105 -6.0664 18 6 2.5996 -0.0662 -7.1706 19 1 3.1203 0.8664 -7.3298 20 6 2.6785 -1.0759 -8.1199 21 7 2.0052 -2.1939 -7.9489 22 14 3.7401 -0.8481 -9.6399 23 1 4.3895 0.4866 -9.5945 24 1 4.7831 -1.9045 -9.6780 25 1 2.8922 -0.9455 -10.8550 26 6 2.5382 -0.6279 -3.6850 27 1 -0.3634 -1.0236 0.0909 28 1 -0.3633 0.5906 0.8409 29 1 -0.3633 0.4332 -0.9320 30 1 2.9320 0.9513 2.0450 31 1 1.2537 0.6548 2.5588 32 1 3.2981 -1.5205 3.2213 33 1 0.8595 -0.1992 4.6848 34 1 1.8118 -1.6655 5.2717 35 1 3.9278 -0.2671 5.3347 36 1 2.9767 1.1999 4.7479 37 1 0.5128 1.3792 -2.0943 38 1 2.1391 2.0197 -2.4769 39 1 1.0402 2.2322 -4.6063 40 1 0.1157 0.7100 -4.3766 41 1 0.9457 -2.1192 -5.7576 42 1 -0.0826 -0.7146 -5.3860 43 1 0.2690 -1.1373 -7.0790 44 1 2.0600 -2.8993 -8.6125 45 1 2.0481 -1.5710 -3.9267 46 1 3.6134 -0.7818 -3.5936 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189231233.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:51 Heat of formation + Delta-G solvation = -42.684765 kcal Electronic energy + Delta-G solvation = -24430.376837 eV Core-core repulsion = 20935.321058 eV Total energy + Delta-G solvation = -3495.055779 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.34173 -39.59761 -38.71038 -37.41809 -36.56339 -33.71887 -32.51961 -31.13744 -29.34034 -28.06724 -28.05910 -26.01805 -24.38393 -23.53086 -23.22487 -21.74903 -20.91213 -20.36659 -18.96702 -18.50504 -17.78183 -17.46633 -16.90531 -16.62216 -16.29743 -15.83446 -15.57542 -15.23183 -15.05443 -14.83712 -14.49841 -14.19584 -13.99352 -13.76069 -13.67895 -13.30036 -13.16415 -12.94280 -12.78717 -12.66086 -12.55546 -12.38056 -12.35724 -12.16815 -12.07406 -11.97394 -11.82518 -11.43729 -11.38380 -11.30975 -10.82773 -10.62320 -10.42511 -9.68500 -8.72289 -7.89030 -5.42848 1.45457 1.48159 1.49218 1.58044 1.67458 2.47762 2.66041 2.97787 3.27546 3.40935 3.60184 3.82115 3.82790 3.92416 3.96774 4.01135 4.02814 4.16396 4.29315 4.32811 4.33984 4.46554 4.47814 4.55454 4.69030 4.74150 4.78255 4.79095 4.83077 4.89634 5.01514 5.04670 5.18013 5.19853 5.21192 5.24795 5.26130 5.33030 5.45870 5.64438 5.71181 6.12596 6.35382 6.53459 7.08948 7.13748 7.81143 8.29613 9.16051 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.035600 B = 0.002760 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.332315 B =10143.839248 C =10316.649190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.086 3.914 3 H 0.119 0.881 4 O -0.391 6.391 5 C 0.088 3.912 6 C -0.180 4.180 7 C -0.175 4.175 8 C -0.158 4.158 9 C 0.514 3.486 10 O -0.588 6.588 11 N -0.610 5.610 12 C 0.097 3.903 13 C -0.140 4.140 14 C 0.166 3.834 15 H 0.086 0.914 16 N -0.603 5.603 17 C 0.179 3.821 18 C -0.267 4.267 19 H 0.079 0.921 20 C -0.050 4.050 21 N -0.939 5.939 22 Si 0.971 3.029 23 H -0.259 1.259 24 H -0.297 1.297 25 H -0.291 1.291 26 C 0.098 3.902 27 H 0.049 0.951 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.068 0.932 41 H -0.019 1.019 42 H 0.027 0.973 43 H 0.035 0.965 44 H 0.248 0.752 45 H 0.030 0.970 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.810 13.627 22.403 26.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.025 3.975 3 H 0.137 0.863 4 O -0.310 6.310 5 C 0.012 3.988 6 C -0.199 4.199 7 C -0.212 4.212 8 C -0.195 4.195 9 C 0.303 3.697 10 O -0.468 6.468 11 N -0.344 5.344 12 C -0.024 4.024 13 C -0.180 4.180 14 C 0.057 3.943 15 H 0.104 0.896 16 N -0.324 5.324 17 C 0.034 3.966 18 C -0.397 4.397 19 H 0.097 0.903 20 C -0.245 4.245 21 N -0.584 5.584 22 Si 0.799 3.201 23 H -0.183 1.183 24 H -0.224 1.224 25 H -0.217 1.217 26 C -0.028 4.028 27 H 0.068 0.932 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.086 0.914 41 H -0.001 1.001 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.561 12.675 22.405 25.987 hybrid contribution 0.757 -1.010 -1.279 1.797 sum -2.805 11.664 21.126 24.295 Atomic orbital electron populations 1.22281 0.91543 1.03433 1.05118 1.21900 0.96423 0.96373 0.82810 0.86318 1.88034 1.86898 1.36113 1.19939 1.22325 1.00498 0.91781 0.84184 1.22128 1.05632 1.02731 0.89396 1.23180 0.95646 1.02562 0.99795 1.23088 0.99127 0.99614 0.97635 1.21054 0.78158 0.85940 0.84548 1.90683 1.48787 1.21008 1.86274 1.48566 1.58182 1.20853 1.06807 1.22778 0.99885 0.83058 0.96650 1.23212 0.98873 1.01955 0.93917 1.21611 0.97223 0.91743 0.83689 0.89613 1.44045 1.27741 1.55305 1.05328 1.20496 0.86987 0.90973 0.98117 1.19622 1.25153 0.97950 0.96990 0.90321 1.26107 1.00130 0.95116 1.03191 1.70242 1.44479 1.07184 1.36509 0.85140 0.78234 0.77853 0.78846 1.18307 1.22389 1.21743 1.22500 0.96882 0.98896 0.84552 0.93200 0.87997 0.89327 0.91659 0.90574 0.89270 0.87417 0.88611 0.87877 0.86929 0.87358 0.88170 0.87649 0.91363 1.00096 0.95466 0.94618 0.94229 0.95195 0.94096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.36 71.98 0.67 -2.24 16 2 C 0.09 1.98 2.48 29.85 0.07 2.05 16 3 H 0.12 1.81 7.53 -2.39 -0.02 1.79 16 4 O -0.39 -10.59 9.57 -130.47 -1.25 -11.84 16 5 C 0.09 1.54 6.03 71.98 0.43 1.97 16 6 C -0.18 -3.23 6.05 -10.79 -0.07 -3.29 16 7 C -0.17 -2.34 10.18 30.62 0.31 -2.03 16 8 C -0.16 -1.87 10.25 30.62 0.31 -1.55 16 9 C 0.51 17.75 7.13 87.66 0.62 18.38 16 10 O -0.59 -27.45 16.91 15.46 0.26 -27.19 16 11 N -0.61 -19.46 3.33 -811.79 -2.70 -22.16 16 12 C 0.10 2.03 6.43 86.85 0.56 2.59 16 13 C -0.14 -3.80 6.61 31.99 0.21 -3.59 16 14 C 0.17 6.35 3.45 46.18 0.16 6.51 16 15 H 0.09 3.15 7.95 -2.38 -0.02 3.13 16 16 N -0.60 -29.58 2.93 -696.15 -2.04 -31.62 16 17 C 0.18 9.01 8.02 127.77 1.02 10.03 16 18 C -0.27 -14.28 9.54 84.03 0.80 -13.48 16 19 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.05 -2.79 5.31 84.86 0.45 -2.34 16 21 N -0.94 -56.35 10.53 21.65 0.23 -56.12 16 22 Si 0.97 44.70 29.55 68.60 2.03 46.73 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 26 C 0.10 3.98 6.51 86.73 0.56 4.55 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 1.11 7.99 -2.39 -0.02 1.09 16 29 H 0.09 1.32 5.82 -2.38 -0.01 1.30 16 30 H 0.07 0.96 8.09 -2.38 -0.02 0.94 16 31 H 0.08 0.93 7.73 -2.39 -0.02 0.91 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.11 1.16 8.03 -2.39 -0.02 1.14 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.11 1.54 5.49 -2.39 -0.01 1.53 16 38 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.07 2.03 6.00 -2.39 -0.01 2.02 16 41 H -0.02 -1.10 7.40 -2.39 -0.02 -1.12 16 42 H 0.03 1.17 5.99 -2.38 -0.01 1.15 16 43 H 0.04 1.95 6.82 -2.39 -0.02 1.93 16 44 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 45 H 0.03 1.47 6.91 -2.39 -0.02 1.45 16 46 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -77.53 364.52 3.62 -73.91 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 0.95 Total: 10.75 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 6.14 Total: 17.54 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -4.51 Total: -109.90 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.99 Total: -39.02 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -77.53 3.62 -73.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189231233.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.222 kcal (2) G-P(sol) polarization free energy of solvation -77.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds