Wall clock time and date at job start Fri Apr 10 2020 14:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46711 * 2 1 4 4 O 1.42899 * 109.47318 * 119.99853 * 2 1 3 5 5 C 1.42895 * 114.00099 * 270.00682 * 4 2 1 6 6 C 1.52998 * 109.47538 * 180.02562 * 5 4 2 7 7 C 1.52996 * 117.52248 * 116.27667 * 6 5 4 8 8 C 1.52994 * 117.50377 * 184.91083 * 6 5 4 9 9 C 1.50700 * 109.47257 * 240.00202 * 2 1 3 10 10 O 1.21281 * 119.99769 * 248.31855 * 9 2 1 11 11 N 1.34773 * 120.00231 * 68.31465 * 9 2 1 12 12 C 1.48217 * 119.97215 * 4.15202 * 11 9 2 13 13 C 1.47135 * 110.34242 * 102.46129 * 12 11 9 14 14 C 1.53790 * 111.84473 * 58.30003 * 13 12 11 15 15 N 1.43467 * 107.96079 * 281.66830 * 14 13 12 16 16 C 1.36939 * 118.94441 * 273.62709 * 15 14 13 17 17 H 1.08005 * 119.99184 * 24.26929 * 16 15 14 18 18 C 1.38812 * 120.00208 * 204.27272 * 16 15 14 19 19 N 1.31621 * 119.99854 * 14.70364 * 18 16 15 20 20 Si 1.86795 * 119.99822 * 194.70106 * 18 16 15 21 21 H 1.48500 * 109.47219 * 60.00059 * 20 18 16 22 22 H 1.48494 * 109.47143 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47120 * 299.99929 * 20 18 16 24 24 C 1.48860 * 122.11970 * 93.65079 * 15 14 13 25 25 C 1.43625 * 119.97181 * 183.87025 * 11 9 2 26 26 H 1.09001 * 109.46741 * 184.49824 * 1 2 3 27 27 H 1.08995 * 109.47418 * 304.49610 * 1 2 3 28 28 H 1.08994 * 109.46822 * 64.50568 * 1 2 3 29 29 H 1.08997 * 109.47460 * 59.99061 * 5 4 2 30 30 H 1.09007 * 109.46611 * 299.99903 * 5 4 2 31 31 H 1.09001 * 115.54642 * 330.57790 * 6 5 4 32 32 H 1.09000 * 117.49893 * 214.96866 * 7 6 5 33 33 H 1.09002 * 117.49993 * 359.97438 * 7 6 5 34 34 H 1.09003 * 117.49647 * 359.97307 * 8 6 5 35 35 H 1.09007 * 117.50500 * 144.98994 * 8 6 5 36 36 H 1.08994 * 109.32186 * 222.73088 * 12 11 9 37 37 H 1.08995 * 109.32000 * 342.36949 * 12 11 9 38 38 H 1.09009 * 109.00494 * 178.90814 * 13 12 11 39 39 H 1.09004 * 109.01138 * 297.76190 * 13 12 11 40 40 H 1.08996 * 109.76525 * 41.28103 * 14 13 12 41 41 H 1.08994 * 109.76673 * 161.99991 * 14 13 12 42 42 H 0.96995 * 119.99773 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.47998 * 80.57845 * 24 15 14 44 44 H 1.08993 * 109.48504 * 200.61722 * 24 15 14 45 45 H 1.09001 * 108.87453 * 31.47521 * 25 11 9 46 46 H 1.09004 * 108.86890 * 149.91226 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2000 0.1829 2.2941 6 6 2.7091 -0.6405 3.4788 7 6 4.1069 -0.3214 4.0130 8 6 2.8699 0.0768 4.8206 9 6 2.0324 -0.7104 -1.2305 10 8 2.6004 -1.7768 -1.1256 11 7 1.8505 -0.1606 -2.4475 12 6 1.2392 1.1842 -2.5686 13 6 2.2748 2.1946 -2.8356 14 6 3.0628 1.8813 -4.1186 15 7 4.0151 0.8527 -3.8129 16 6 5.2370 1.2096 -3.3081 17 1 5.3522 2.1479 -2.7859 18 6 6.3273 0.3655 -3.4677 19 7 6.2731 -0.6226 -4.3356 20 14 7.8715 0.6320 -2.4510 21 1 7.5394 0.5201 -1.0079 22 1 8.8821 -0.3961 -2.8069 23 1 8.4202 1.9835 -2.7293 24 6 3.7178 -0.5901 -4.0271 25 6 2.2546 -0.8759 -3.6256 26 1 -0.3633 -1.0245 0.0806 27 1 -0.3634 0.5820 0.8469 28 1 -0.3633 0.4423 -0.9276 29 1 1.2538 0.6547 2.5587 30 1 2.9319 0.9514 2.0449 31 1 2.3878 -1.6818 3.5002 32 1 4.7051 -1.1528 4.3858 33 1 4.6643 0.4751 3.5200 34 1 2.6134 1.1355 4.8592 35 1 2.6543 -0.4926 5.7248 36 1 0.5192 1.1806 -3.3869 37 1 0.7274 1.4327 -1.6390 38 1 1.8002 3.1704 -2.9399 39 1 2.9667 2.2249 -1.9938 40 1 2.3808 1.5332 -4.8943 41 1 3.5828 2.7764 -4.4597 42 1 7.0349 -1.2127 -4.4469 43 1 3.8631 -0.8390 -5.0784 44 1 4.3871 -1.1941 -3.4146 45 1 2.1462 -1.9451 -3.4435 46 1 1.6018 -0.5927 -4.4512 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195148930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:55 Heat of formation + Delta-G solvation = -17.010319 kcal Electronic energy + Delta-G solvation = -25771.304217 eV Core-core repulsion = 22277.361766 eV Total energy + Delta-G solvation = -3493.942451 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.02126 -38.32264 -37.03325 -36.27023 -34.40759 -32.32585 -31.79903 -30.50748 -27.60726 -27.13247 -25.43255 -24.30902 -23.30969 -22.48350 -21.52890 -20.83199 -19.74724 -18.62135 -17.32061 -16.61093 -16.46210 -15.87391 -15.53430 -15.36357 -14.76300 -14.27065 -14.18398 -13.81046 -13.59127 -13.49910 -13.38496 -12.85118 -12.64872 -12.44686 -12.26482 -12.04873 -11.71128 -11.64386 -11.36066 -11.19125 -11.04872 -10.86958 -10.68911 -10.56222 -10.54220 -10.35543 -10.31388 -10.11137 -9.73173 -9.70466 -9.58940 -8.96855 -8.38225 -7.98011 -6.65004 -5.71026 -3.13205 3.05296 3.21858 3.42629 3.49370 3.50892 3.65842 3.98847 4.56868 4.65863 4.75164 4.78905 4.94173 4.95798 5.13397 5.15595 5.25925 5.35215 5.44315 5.48435 5.51596 5.54716 5.56794 5.60225 5.67718 5.80700 5.81819 5.90173 5.99033 6.05882 6.12410 6.17652 6.21311 6.39739 6.43299 6.49957 6.76826 6.96349 7.01054 7.24169 7.52942 7.71537 7.84989 7.98276 8.51812 8.78968 9.27913 9.96467 10.40995 11.36811 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.012060 B = 0.005860 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.257976 B = 4776.761800 C = 6198.822466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.074 3.926 3 H 0.082 0.918 4 O -0.353 6.353 5 C 0.091 3.909 6 C -0.150 4.150 7 C -0.176 4.176 8 C -0.175 4.175 9 C 0.517 3.483 10 O -0.521 6.521 11 N -0.583 5.583 12 C 0.114 3.886 13 C -0.176 4.176 14 C 0.164 3.836 15 N -0.591 5.591 16 C -0.257 4.257 17 H 0.062 0.938 18 C 0.007 3.993 19 N -0.905 5.905 20 Si 0.899 3.101 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.166 3.834 25 C 0.093 3.907 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.045 0.955 42 H 0.254 0.746 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.552 4.625 10.498 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 H 0.100 0.900 4 O -0.271 6.271 5 C 0.014 3.986 6 C -0.168 4.168 7 C -0.213 4.213 8 C -0.212 4.212 9 C 0.303 3.697 10 O -0.395 6.395 11 N -0.316 5.316 12 C -0.008 4.008 13 C -0.217 4.217 14 C 0.035 3.965 15 N -0.312 5.312 16 C -0.387 4.387 17 H 0.080 0.920 18 C -0.191 4.191 19 N -0.549 5.549 20 Si 0.729 3.271 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.041 3.959 25 C -0.032 4.032 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.076 3.690 10.483 17.161 hybrid contribution 0.906 0.535 0.535 1.180 sum -12.171 4.225 11.018 16.952 Atomic orbital electron populations 1.22371 0.94118 1.03714 1.02936 1.21862 0.94515 0.96432 0.85962 0.90021 1.88033 1.86527 1.33803 1.18732 1.22084 0.98958 0.92114 0.85437 1.22087 1.00605 1.00989 0.93156 1.23077 0.90887 1.03717 1.03626 1.22964 1.02901 1.00945 0.94427 1.20072 0.79645 0.86019 0.84014 1.90694 1.40625 1.22579 1.85646 1.47277 1.60874 1.17887 1.05610 1.20942 0.95555 0.82720 1.01614 1.21975 0.98910 0.96920 1.03917 1.20220 0.91488 0.92590 0.92220 1.43689 1.12889 1.00243 1.74426 1.19064 0.85720 1.04974 1.28956 0.91986 1.24946 0.97467 0.98907 0.97828 1.69996 1.30714 1.19756 1.34450 0.86420 0.83034 0.77125 0.80486 1.21112 1.21577 1.21056 1.21802 0.90023 0.84992 0.99092 1.21880 0.99475 0.96317 0.85539 0.91115 0.91657 0.90373 0.93011 0.93013 0.86785 0.88566 0.88507 0.88784 0.88529 0.91477 0.90795 0.92471 0.91595 0.94806 0.93668 0.93616 0.94372 0.90056 0.91260 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.07 37.16 0.34 -1.67 16 2 C 0.07 1.15 2.28 -27.88 -0.06 1.09 16 3 H 0.08 1.18 7.14 -51.93 -0.37 0.81 16 4 O -0.35 -6.04 9.53 -55.00 -0.52 -6.57 16 5 C 0.09 1.19 6.03 37.16 0.22 1.42 16 6 C -0.15 -1.84 6.06 -90.63 -0.55 -2.38 16 7 C -0.18 -2.02 10.18 -26.73 -0.27 -2.29 16 8 C -0.18 -1.66 10.25 -26.73 -0.27 -1.93 16 9 C 0.52 10.32 7.02 -10.99 -0.08 10.25 16 10 O -0.52 -12.89 16.10 -14.22 -0.23 -13.11 16 11 N -0.58 -10.62 2.47 -176.97 -0.44 -11.06 16 12 C 0.11 1.61 4.88 -5.91 -0.03 1.58 16 13 C -0.18 -2.82 5.64 -29.14 -0.16 -2.99 16 14 C 0.16 3.23 5.63 -5.24 -0.03 3.20 16 15 N -0.59 -14.59 2.54 -172.30 -0.44 -15.03 16 16 C -0.26 -7.14 9.28 -15.06 -0.14 -7.28 16 17 H 0.06 1.69 7.87 -52.48 -0.41 1.28 16 18 C 0.01 0.20 4.95 -17.43 -0.09 0.12 16 19 N -0.90 -26.97 10.85 55.49 0.60 -26.37 16 20 Si 0.90 22.77 29.58 -169.99 -5.03 17.75 16 21 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.17 4.09 5.17 -2.00 -0.01 4.08 16 25 C 0.09 1.83 5.18 -4.83 -0.03 1.81 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.60 7.98 -51.93 -0.41 0.19 16 28 H 0.08 0.78 5.69 -51.93 -0.30 0.49 16 29 H 0.05 0.55 7.98 -51.93 -0.41 0.14 16 30 H 0.05 0.68 7.82 -51.92 -0.41 0.28 16 31 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 1.14 8.03 -51.93 -0.42 0.73 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.07 0.81 8.06 -51.93 -0.42 0.40 16 37 H 0.07 0.85 4.22 -51.93 -0.22 0.63 16 38 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.07 1.23 7.91 -51.93 -0.41 0.82 16 40 H 0.03 0.62 7.58 -51.93 -0.39 0.22 16 41 H 0.05 0.91 8.02 -51.93 -0.42 0.49 16 42 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.04 0.99 8.01 -51.93 -0.42 0.57 16 44 H 0.08 2.37 6.45 -51.93 -0.34 2.03 16 45 H 0.07 1.41 7.43 -51.93 -0.39 1.02 16 46 H 0.06 0.95 7.73 -51.93 -0.40 0.55 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -34.00 359.09 -9.60 -43.60 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.80 Total: 0.39 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -1.16 Total: 4.99 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.27 Total: -52.46 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.75 Total: -19.68 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.03 Total: 17.75 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.00 -9.60 -43.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195148930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.586 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds