Wall clock time and date at job start Fri Apr 10 2020 14:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46711 * 2 1 4 4 O 1.42899 * 109.47318 * 119.99853 * 2 1 3 5 5 C 1.42895 * 114.00099 * 270.00682 * 4 2 1 6 6 C 1.52998 * 109.47538 * 180.02562 * 5 4 2 7 7 C 1.52996 * 117.52248 * 116.27667 * 6 5 4 8 8 C 1.52994 * 117.50377 * 184.91083 * 6 5 4 9 9 C 1.50700 * 109.47257 * 240.00202 * 2 1 3 10 10 O 1.21281 * 119.99769 * 248.31855 * 9 2 1 11 11 N 1.34773 * 120.00231 * 68.31465 * 9 2 1 12 12 C 1.48217 * 119.97215 * 4.15202 * 11 9 2 13 13 C 1.47135 * 110.34242 * 102.46129 * 12 11 9 14 14 C 1.53790 * 111.84473 * 58.30003 * 13 12 11 15 15 N 1.43467 * 107.96079 * 281.66830 * 14 13 12 16 16 C 1.36939 * 118.94441 * 273.62709 * 15 14 13 17 17 H 1.08005 * 119.99184 * 24.26929 * 16 15 14 18 18 C 1.38812 * 120.00208 * 204.27272 * 16 15 14 19 19 N 1.31621 * 119.99854 * 14.70364 * 18 16 15 20 20 Si 1.86795 * 119.99822 * 194.70106 * 18 16 15 21 21 H 1.48500 * 109.47219 * 60.00059 * 20 18 16 22 22 H 1.48494 * 109.47143 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47120 * 299.99929 * 20 18 16 24 24 C 1.48860 * 122.11970 * 93.65079 * 15 14 13 25 25 C 1.43625 * 119.97181 * 183.87025 * 11 9 2 26 26 H 1.09001 * 109.46741 * 184.49824 * 1 2 3 27 27 H 1.08995 * 109.47418 * 304.49610 * 1 2 3 28 28 H 1.08994 * 109.46822 * 64.50568 * 1 2 3 29 29 H 1.08997 * 109.47460 * 59.99061 * 5 4 2 30 30 H 1.09007 * 109.46611 * 299.99903 * 5 4 2 31 31 H 1.09001 * 115.54642 * 330.57790 * 6 5 4 32 32 H 1.09000 * 117.49893 * 214.96866 * 7 6 5 33 33 H 1.09002 * 117.49993 * 359.97438 * 7 6 5 34 34 H 1.09003 * 117.49647 * 359.97307 * 8 6 5 35 35 H 1.09007 * 117.50500 * 144.98994 * 8 6 5 36 36 H 1.08994 * 109.32186 * 222.73088 * 12 11 9 37 37 H 1.08995 * 109.32000 * 342.36949 * 12 11 9 38 38 H 1.09009 * 109.00494 * 178.90814 * 13 12 11 39 39 H 1.09004 * 109.01138 * 297.76190 * 13 12 11 40 40 H 1.08996 * 109.76525 * 41.28103 * 14 13 12 41 41 H 1.08994 * 109.76673 * 161.99991 * 14 13 12 42 42 H 0.96995 * 119.99773 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.47998 * 80.57845 * 24 15 14 44 44 H 1.08993 * 109.48504 * 200.61722 * 24 15 14 45 45 H 1.09001 * 108.87453 * 31.47521 * 25 11 9 46 46 H 1.09004 * 108.86890 * 149.91226 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2000 0.1829 2.2941 6 6 2.7091 -0.6405 3.4788 7 6 4.1069 -0.3214 4.0130 8 6 2.8699 0.0768 4.8206 9 6 2.0324 -0.7104 -1.2305 10 8 2.6004 -1.7768 -1.1256 11 7 1.8505 -0.1606 -2.4475 12 6 1.2392 1.1842 -2.5686 13 6 2.2748 2.1946 -2.8356 14 6 3.0628 1.8813 -4.1186 15 7 4.0151 0.8527 -3.8129 16 6 5.2370 1.2096 -3.3081 17 1 5.3522 2.1479 -2.7859 18 6 6.3273 0.3655 -3.4677 19 7 6.2731 -0.6226 -4.3356 20 14 7.8715 0.6320 -2.4510 21 1 7.5394 0.5201 -1.0079 22 1 8.8821 -0.3961 -2.8069 23 1 8.4202 1.9835 -2.7293 24 6 3.7178 -0.5901 -4.0271 25 6 2.2546 -0.8759 -3.6256 26 1 -0.3633 -1.0245 0.0806 27 1 -0.3634 0.5820 0.8469 28 1 -0.3633 0.4423 -0.9276 29 1 1.2538 0.6547 2.5587 30 1 2.9319 0.9514 2.0449 31 1 2.3878 -1.6818 3.5002 32 1 4.7051 -1.1528 4.3858 33 1 4.6643 0.4751 3.5200 34 1 2.6134 1.1355 4.8592 35 1 2.6543 -0.4926 5.7248 36 1 0.5192 1.1806 -3.3869 37 1 0.7274 1.4327 -1.6390 38 1 1.8002 3.1704 -2.9399 39 1 2.9667 2.2249 -1.9938 40 1 2.3808 1.5332 -4.8943 41 1 3.5828 2.7764 -4.4597 42 1 7.0349 -1.2127 -4.4469 43 1 3.8631 -0.8390 -5.0784 44 1 4.3871 -1.1941 -3.4146 45 1 2.1462 -1.9451 -3.4435 46 1 1.6018 -0.5927 -4.4512 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195148930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:15:54 Heat of formation + Delta-G solvation = -38.127835 kcal Electronic energy + Delta-G solvation = -25772.219941 eV Core-core repulsion = 22277.361766 eV Total energy + Delta-G solvation = -3494.858176 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45130 -39.47832 -38.49599 -37.44729 -36.16233 -33.93182 -33.34630 -32.06579 -29.31004 -28.11501 -27.10456 -25.84510 -24.92359 -23.29765 -22.90413 -21.78879 -21.48364 -20.05215 -18.79931 -18.31363 -17.80504 -17.12456 -17.00776 -16.76203 -16.15242 -15.88430 -15.53492 -15.32390 -15.05610 -14.95742 -14.70882 -14.19526 -13.96964 -13.76937 -13.61881 -13.35480 -13.26979 -12.93278 -12.82352 -12.66620 -12.44993 -12.40695 -12.24333 -12.10152 -12.03919 -11.73985 -11.65967 -11.43717 -11.42738 -11.29137 -10.76939 -10.52106 -10.32398 -9.54344 -8.68313 -7.86984 -5.29913 1.35647 1.41738 1.45255 1.62251 1.92077 2.47380 2.65465 2.96378 3.28053 3.47225 3.71499 3.80493 3.86187 3.91467 4.04285 4.05852 4.12126 4.28674 4.31582 4.34289 4.45222 4.54973 4.55980 4.63437 4.70772 4.73446 4.80934 4.83642 4.85060 4.95437 4.96657 4.97926 5.17074 5.21816 5.22085 5.29139 5.32539 5.54036 5.57476 5.70671 5.85000 6.14267 6.37869 6.53561 7.15218 7.30186 7.94160 8.34676 9.17691 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.012060 B = 0.005860 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.257976 B = 4776.761800 C = 6198.822466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.077 3.923 3 H 0.097 0.903 4 O -0.390 6.390 5 C 0.088 3.912 6 C -0.173 4.173 7 C -0.196 4.196 8 C -0.141 4.141 9 C 0.501 3.499 10 O -0.586 6.586 11 N -0.582 5.582 12 C 0.106 3.894 13 C -0.162 4.162 14 C 0.152 3.848 15 N -0.605 5.605 16 C -0.255 4.255 17 H 0.065 0.935 18 C -0.053 4.053 19 N -0.936 5.936 20 Si 0.953 3.047 21 H -0.291 1.291 22 H -0.296 1.296 23 H -0.267 1.267 24 C 0.178 3.822 25 C 0.105 3.895 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.035 0.965 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.245 0.755 43 H 0.015 0.985 44 H 0.024 0.976 45 H 0.054 0.946 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.635 7.592 11.859 21.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 H 0.115 0.885 4 O -0.309 6.309 5 C 0.012 3.988 6 C -0.192 4.192 7 C -0.233 4.233 8 C -0.178 4.178 9 C 0.290 3.710 10 O -0.466 6.466 11 N -0.314 5.314 12 C -0.014 4.014 13 C -0.202 4.202 14 C 0.025 3.975 15 N -0.328 5.328 16 C -0.385 4.385 17 H 0.083 0.917 18 C -0.248 4.248 19 N -0.583 5.583 20 Si 0.782 3.218 21 H -0.218 1.218 22 H -0.222 1.222 23 H -0.192 1.192 24 C 0.052 3.948 25 C -0.021 4.021 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.033 0.967 44 H 0.043 0.957 45 H 0.073 0.927 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.213 6.745 11.842 21.180 hybrid contribution 1.847 -0.332 0.085 1.879 sum -14.365 6.413 11.927 19.742 Atomic orbital electron populations 1.22351 0.90393 1.03877 1.05455 1.21971 0.97096 0.95761 0.83543 0.88534 1.88002 1.87085 1.35830 1.20013 1.22287 1.00433 0.91680 0.84394 1.22141 1.01280 1.00899 0.94855 1.23145 0.91304 1.03875 1.05014 1.23071 0.99559 1.01834 0.93330 1.21139 0.78545 0.85541 0.85819 1.90659 1.43562 1.25605 1.86755 1.47487 1.59991 1.19341 1.04550 1.21359 0.95428 0.79523 1.05082 1.21759 0.98504 0.99963 0.99993 1.20540 0.91181 0.90856 0.94885 1.43900 1.13051 1.01111 1.74721 1.19395 0.86894 1.04542 1.27716 0.91723 1.25654 1.00380 0.99456 0.99336 1.70162 1.30953 1.20839 1.36301 0.85543 0.80143 0.77536 0.78538 1.21810 1.22215 1.19202 1.21418 0.92178 0.84626 0.96539 1.21552 0.96752 0.96114 0.87656 0.92349 0.88474 0.88214 0.89785 0.93591 0.88080 0.88622 0.89298 0.86978 0.86776 0.87798 0.87151 0.87827 0.94574 0.92705 0.94325 0.94588 0.96728 0.95725 0.92720 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 9.07 71.98 0.65 -2.46 16 2 C 0.08 2.26 2.28 29.85 0.07 2.33 16 3 H 0.10 2.49 7.14 -2.39 -0.02 2.47 16 4 O -0.39 -13.22 9.53 -130.07 -1.24 -14.46 16 5 C 0.09 2.18 6.03 71.98 0.43 2.61 16 6 C -0.17 -4.11 6.06 -10.80 -0.07 -4.18 16 7 C -0.20 -4.44 10.18 30.59 0.31 -4.13 16 8 C -0.14 -2.33 10.25 30.59 0.31 -2.01 16 9 C 0.50 19.97 7.02 87.66 0.62 20.59 16 10 O -0.59 -30.48 16.10 15.87 0.26 -30.23 16 11 N -0.58 -20.23 2.47 -832.19 -2.05 -22.29 16 12 C 0.11 2.48 4.88 84.22 0.41 2.89 16 13 C -0.16 -4.52 5.64 29.04 0.16 -4.36 16 14 C 0.15 5.65 5.63 87.21 0.49 6.14 16 15 N -0.61 -30.09 2.54 -699.02 -1.78 -31.86 16 16 C -0.25 -14.38 9.28 84.03 0.78 -13.60 16 17 H 0.07 3.54 7.87 -2.91 -0.02 3.52 16 18 C -0.05 -3.17 4.95 84.86 0.42 -2.75 16 19 N -0.94 -58.73 10.85 21.65 0.23 -58.50 16 20 Si 0.95 48.39 29.58 68.60 2.03 50.42 16 21 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 22 H -0.30 -15.16 7.11 99.48 0.71 -14.46 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 24 C 0.18 9.12 5.17 86.40 0.45 9.57 16 25 C 0.10 4.12 5.18 87.39 0.45 4.57 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.10 1.27 7.98 -2.39 -0.02 1.25 16 28 H 0.10 1.44 5.69 -2.39 -0.01 1.43 16 29 H 0.08 1.49 7.98 -2.39 -0.02 1.47 16 30 H 0.05 1.16 7.82 -2.38 -0.02 1.14 16 31 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 2.11 8.03 -2.39 -0.02 2.09 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.10 1.80 8.06 -2.39 -0.02 1.78 16 37 H 0.11 1.86 4.22 -2.39 -0.01 1.85 16 38 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.04 1.24 7.91 -2.38 -0.02 1.23 16 40 H 0.05 1.81 7.58 -2.39 -0.02 1.79 16 41 H 0.04 1.48 8.02 -2.39 -0.02 1.46 16 42 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.01 0.80 8.01 -2.39 -0.02 0.78 16 44 H 0.02 1.51 6.45 -2.39 -0.02 1.50 16 45 H 0.05 2.31 7.43 -2.39 -0.02 2.29 16 46 H 0.10 2.99 7.73 -2.39 -0.02 2.97 16 Total: -1.00 -81.88 359.09 3.89 -77.99 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.95 Total: 13.71 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 5.49 Total: 15.21 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -3.59 Total: -112.64 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.98 Total: -44.68 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -81.88 3.89 -77.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195148930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.861 kcal (2) G-P(sol) polarization free energy of solvation -81.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds