Wall clock time and date at job start Fri Apr 10 2020 14:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42897 * 113.99696 * 2 1 4 4 C 1.52999 * 109.47196 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47357 * 55.00319 * 4 3 2 6 6 C 1.53000 * 109.47219 * 295.00559 * 4 3 2 7 7 C 1.50703 * 109.47321 * 175.00346 * 4 3 2 8 8 O 1.21273 * 119.99947 * 94.78427 * 7 4 3 9 9 N 1.34778 * 119.99577 * 274.78106 * 7 4 3 10 10 C 1.47145 * 121.22401 * 5.20759 * 9 7 4 11 11 C 1.52836 * 107.97861 * 122.69979 * 10 9 7 12 12 C 1.53092 * 110.58332 * 57.34432 * 11 10 9 13 13 H 1.08994 * 112.49445 * 71.38739 * 12 11 10 14 14 C 1.56033 * 106.39265 * 195.45037 * 12 11 10 15 15 C 1.54503 * 102.61299 * 78.38278 * 14 12 11 16 16 N 1.47433 * 107.14683 * 22.85099 * 15 14 12 17 17 C 1.36939 * 126.05361 * 181.57224 * 16 15 14 18 18 H 1.08007 * 119.99391 * 174.97756 * 17 16 15 19 19 C 1.38813 * 120.00494 * 354.98148 * 17 16 15 20 20 N 1.31622 * 119.99897 * 5.12305 * 19 17 16 21 21 Si 1.86794 * 119.99981 * 185.11535 * 19 17 16 22 22 H 1.48501 * 109.47013 * 95.00345 * 21 19 17 23 23 H 1.48502 * 109.47213 * 215.00130 * 21 19 17 24 24 H 1.48494 * 109.47507 * 335.00395 * 21 19 17 25 25 C 1.46465 * 107.88337 * 1.61681 * 16 15 14 26 26 H 1.08996 * 108.42342 * 89.90635 * 25 16 15 27 27 C 1.46764 * 121.21535 * 184.92762 * 9 7 4 28 28 H 1.09001 * 109.47060 * 60.00131 * 1 2 3 29 29 H 1.09003 * 109.47129 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47619 * 299.99699 * 1 2 3 31 31 H 1.09006 * 109.47343 * 60.00495 * 3 2 1 32 32 H 1.08994 * 109.47558 * 300.00379 * 3 2 1 33 33 H 1.09000 * 109.47319 * 55.09141 * 6 4 3 34 34 H 1.09005 * 109.47285 * 295.09580 * 6 4 3 35 35 H 1.09000 * 109.47339 * 175.09866 * 6 4 3 36 36 H 1.09002 * 109.76327 * 242.32108 * 10 9 7 37 37 H 1.09002 * 109.76160 * 3.03300 * 10 9 7 38 38 H 1.09001 * 109.25914 * 177.62430 * 11 10 9 39 39 H 1.08997 * 109.25524 * 297.09585 * 11 10 9 40 40 H 1.08998 * 110.78185 * 196.66166 * 14 12 11 41 41 H 1.08997 * 110.77610 * 320.10499 * 14 12 11 42 42 H 1.09003 * 109.90124 * 142.23343 * 15 14 12 43 43 H 1.09000 * 109.90042 * 263.29155 * 15 14 12 44 44 H 0.96992 * 120.00109 * 180.02562 * 20 19 17 45 45 H 1.08996 * 109.22793 * 352.86170 * 27 9 7 46 46 H 1.08996 * 109.23018 * 112.22687 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.8514 0.5684 -0.8410 6 6 3.9951 0.5369 1.3082 7 6 4.1479 2.5561 -0.1231 8 8 4.4811 3.1634 0.8723 9 7 4.3253 3.1075 -1.3401 10 6 3.8290 2.4458 -2.5570 11 6 2.8865 3.4150 -3.2700 12 6 3.6055 4.7284 -3.5888 13 1 4.3431 4.6177 -4.3836 14 6 2.4932 5.7667 -3.9344 15 6 1.9613 6.1678 -2.5404 16 7 3.0287 5.8741 -1.5668 17 6 2.9551 6.0543 -0.2113 18 1 3.7683 5.7303 0.4214 19 6 1.8355 6.6532 0.3496 20 7 0.8023 6.9562 -0.4076 21 14 1.7949 7.0288 2.1789 22 1 2.2215 8.4331 2.4054 23 1 0.4139 6.8422 2.6921 24 1 2.7169 6.1101 2.8936 25 6 4.1821 5.3566 -2.3064 26 1 4.8154 6.1974 -2.5894 27 6 5.0154 4.3929 -1.4994 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8901 32 1 1.6885 1.8464 -0.8899 33 1 3.4849 -0.4172 1.4401 34 1 3.7561 1.1951 2.1436 35 1 5.0719 0.3713 1.2727 36 1 4.6662 2.1987 -3.2098 37 1 3.2902 1.5370 -2.2888 38 1 2.5389 2.9611 -4.1980 39 1 2.0302 3.6213 -2.6280 40 1 2.9159 6.6291 -4.4499 41 1 1.7059 5.3058 -4.5308 42 1 1.7273 7.2323 -2.5248 43 1 1.0691 5.5884 -2.3029 44 1 0.0201 7.3749 -0.0158 45 1 5.2064 4.8222 -0.5159 46 1 5.9647 4.2299 -2.0096 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222423630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:14:47 Heat of formation + Delta-G solvation = -74.713392 kcal Electronic energy + Delta-G solvation = -26666.059085 eV Core-core repulsion = 23169.614441 eV Total energy + Delta-G solvation = -3496.444644 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57940 -39.89734 -38.75926 -36.54952 -34.68761 -34.59871 -32.78124 -30.74588 -30.06494 -28.35141 -26.89044 -26.49666 -25.68904 -23.90671 -23.39967 -21.73822 -20.74434 -19.49556 -18.55096 -18.44258 -17.34509 -17.06296 -16.91652 -16.64060 -16.17861 -16.05662 -15.67708 -15.35494 -15.16589 -14.54924 -14.35868 -14.18299 -14.12254 -13.72879 -13.52846 -13.19136 -13.11806 -13.08124 -12.83753 -12.63437 -12.57572 -12.49359 -12.31844 -12.25803 -12.05986 -11.88885 -11.62533 -11.38615 -11.27469 -11.12440 -10.74401 -10.67035 -10.63471 -9.48794 -8.79356 -7.85061 -5.13747 1.34094 1.35117 1.46808 1.56579 2.13553 2.46797 2.81190 3.33678 3.50324 3.64911 3.77245 3.88164 3.91966 3.95448 4.12476 4.24286 4.31467 4.41072 4.42757 4.50551 4.51763 4.56660 4.60056 4.63227 4.69591 4.74733 4.81157 4.87777 4.88876 4.95271 4.98885 5.03377 5.14816 5.18010 5.26583 5.33111 5.56448 5.65525 5.72090 5.73871 5.81906 6.04299 6.23560 6.56473 7.15465 7.29637 7.83755 8.46896 9.25893 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.011371 B = 0.007548 C = 0.006121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.849598 B = 3708.879354 C = 4572.980838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.390 6.390 3 C 0.083 3.917 4 C -0.097 4.097 5 H 0.130 0.870 6 C -0.125 4.125 7 C 0.514 3.486 8 O -0.582 6.582 9 N -0.595 5.595 10 C 0.104 3.896 11 C -0.120 4.120 12 C -0.083 4.083 13 H 0.124 0.876 14 C -0.130 4.130 15 C 0.186 3.814 16 N -0.604 5.604 17 C -0.200 4.200 18 H 0.068 0.932 19 C -0.064 4.064 20 N -0.948 5.948 21 Si 0.950 3.050 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.286 1.286 25 C 0.142 3.858 26 H 0.026 0.974 27 C 0.115 3.885 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.033 0.967 40 H 0.067 0.933 41 H 0.082 0.918 42 H -0.001 1.001 43 H 0.003 0.997 44 H 0.242 0.758 45 H 0.051 0.949 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.497 -15.493 -9.565 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.309 6.309 3 C 0.006 3.994 4 C -0.118 4.118 5 H 0.147 0.853 6 C -0.183 4.183 7 C 0.302 3.698 8 O -0.462 6.462 9 N -0.327 5.327 10 C -0.017 4.017 11 C -0.158 4.158 12 C -0.103 4.103 13 H 0.142 0.858 14 C -0.168 4.168 15 C 0.061 3.939 16 N -0.329 5.329 17 C -0.330 4.330 18 H 0.086 0.914 19 C -0.257 4.257 20 N -0.598 5.598 21 Si 0.781 3.219 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.212 1.212 25 C 0.035 3.965 26 H 0.043 0.957 27 C -0.009 4.009 28 H 0.065 0.935 29 H 0.133 0.867 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.018 0.982 43 H 0.021 0.979 44 H 0.051 0.949 45 H 0.069 0.931 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.648 -15.256 -8.884 18.256 hybrid contribution -0.859 1.411 1.640 2.328 sum 3.788 -13.845 -7.244 16.078 Atomic orbital electron populations 1.22958 0.79490 1.04309 1.00365 1.87768 1.21228 1.26453 1.95501 1.22140 0.92204 0.85011 1.00057 1.21219 0.94032 0.93257 1.03255 0.85266 1.21560 1.01708 1.00574 0.94462 1.20816 0.78253 0.88037 0.82647 1.90665 1.53084 1.64413 1.38016 1.48029 1.56699 1.21178 1.06761 1.22050 0.98906 0.95504 0.85246 1.21820 0.97875 0.95117 1.00998 1.22420 0.97355 0.94334 0.96158 0.85768 1.23033 0.98779 0.98975 0.96014 1.20965 0.89954 0.96090 0.86899 1.44467 1.12104 1.74365 1.01937 1.19137 1.01448 1.29650 0.82763 0.91400 1.25288 0.96995 1.02865 1.00527 1.70145 1.05799 1.49652 1.34247 0.85450 0.76301 0.77819 0.82367 1.21362 1.21978 1.21165 1.20920 0.89465 0.93961 0.92174 0.95657 1.21202 0.95067 0.83869 1.00775 0.93535 0.86732 0.94619 0.95425 0.93023 0.89643 0.94334 0.91552 0.87518 0.88648 0.87897 0.94849 0.91465 0.89984 0.98249 0.97851 0.94901 0.93062 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 11.01 113.37 1.25 1.78 16 2 O -0.39 -10.23 10.16 -148.98 -1.51 -11.74 16 3 C 0.08 2.57 5.03 71.98 0.36 2.93 16 4 C -0.10 -2.77 2.10 -11.54 -0.02 -2.80 16 5 H 0.13 2.80 6.71 -2.39 -0.02 2.79 16 6 C -0.13 -3.47 8.78 71.98 0.63 -2.84 16 7 C 0.51 19.16 6.82 87.66 0.60 19.76 16 8 O -0.58 -27.77 15.38 -3.01 -0.05 -27.82 16 9 N -0.60 -19.48 2.97 -823.95 -2.45 -21.93 16 10 C 0.10 2.36 5.93 86.20 0.51 2.87 16 11 C -0.12 -3.11 5.04 30.57 0.15 -2.96 16 12 C -0.08 -2.34 3.68 -9.37 -0.03 -2.38 16 13 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 14 C -0.13 -4.30 6.33 32.16 0.20 -4.09 16 15 C 0.19 8.99 4.61 86.71 0.40 9.39 16 16 N -0.60 -30.31 3.19 -674.90 -2.16 -32.47 16 17 C -0.20 -11.68 9.70 84.03 0.82 -10.86 16 18 H 0.07 4.15 6.38 -2.91 -0.02 4.13 16 19 C -0.06 -3.88 5.48 84.86 0.47 -3.42 16 20 N -0.95 -58.89 10.41 21.65 0.23 -58.66 16 21 Si 0.95 50.49 29.56 68.60 2.03 52.51 16 22 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 23 H -0.29 -15.39 7.11 99.48 0.71 -14.69 16 24 H -0.29 -15.44 7.11 99.48 0.71 -14.74 16 25 C 0.14 5.38 2.97 44.63 0.13 5.51 16 26 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 27 C 0.11 4.10 5.65 85.62 0.48 4.58 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.05 1.65 7.28 -2.39 -0.02 1.63 16 33 H 0.08 2.02 7.70 -2.39 -0.02 2.00 16 34 H 0.04 1.27 7.69 -2.38 -0.02 1.26 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 1.89 5.05 -2.39 -0.01 1.88 16 38 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.03 1.19 6.85 -2.39 -0.02 1.17 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.08 2.36 7.97 -2.39 -0.02 2.34 16 42 H 0.00 -0.04 7.44 -2.39 -0.02 -0.06 16 43 H 0.00 0.18 7.20 -2.39 -0.02 0.16 16 44 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.05 2.31 5.47 -2.39 -0.01 2.29 16 46 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -77.93 349.72 2.99 -74.94 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.95 Total: 7.70 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 5.95 Total: 17.46 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -4.38 Total: -113.06 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.56 Total: -39.56 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.03 Total: 52.51 kcal Total: -77.93 2.99 -74.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222423630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.230 kcal (2) G-P(sol) polarization free energy of solvation -77.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds