Wall clock time and date at job start Fri Apr 10 2020 14:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.45206 * 2 1 4 4 C 1.53037 * 109.46019 * 240.02625 * 2 1 3 5 5 C 1.53124 * 109.27570 * 180.80512 * 4 2 1 6 6 H 1.08992 * 109.52302 * 297.75078 * 5 4 2 7 7 N 1.46901 * 109.51716 * 177.55559 * 5 4 2 8 8 C 1.46909 * 110.99228 * 155.31940 * 7 5 4 9 9 C 1.53004 * 109.46497 * 180.02562 * 8 7 5 10 10 H 1.08998 * 109.47223 * 60.00430 * 9 8 7 11 11 O 1.42898 * 109.47377 * 299.99652 * 9 8 7 12 12 C 1.53006 * 109.46567 * 179.97438 * 9 8 7 13 13 N 1.46898 * 109.47088 * 180.46350 * 12 9 8 14 14 C 1.46898 * 111.00424 * 199.85383 * 13 12 9 15 15 C 1.46898 * 111.00155 * 75.89470 * 13 12 9 16 16 C 1.50703 * 109.47534 * 190.00309 * 15 13 12 17 17 H 1.07998 * 119.99573 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00142 * 180.02562 * 16 15 13 19 19 N 1.31512 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99844 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47037 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46956 * 119.99878 * 20 18 16 23 23 H 1.48496 * 109.47064 * 239.99865 * 20 18 16 24 24 C 1.53119 * 109.15777 * 57.65631 * 5 4 2 25 25 C 1.53033 * 109.28048 * 302.34055 * 24 5 4 26 26 N 1.46852 * 109.52252 * 59.18526 * 25 24 5 27 27 C 1.46897 * 111.00038 * 174.16108 * 26 25 24 28 28 H 1.09012 * 109.47256 * 300.02662 * 1 2 3 29 29 H 1.08996 * 109.47316 * 60.02119 * 1 2 3 30 30 H 1.09000 * 109.47580 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.50612 * 60.86548 * 4 2 1 32 32 H 1.09004 * 109.53179 * 300.76562 * 4 2 1 33 33 H 1.00895 * 110.99962 * 31.36836 * 7 5 4 34 34 H 1.08998 * 109.47133 * 299.99667 * 8 7 5 35 35 H 1.08991 * 109.47394 * 60.00396 * 8 7 5 36 36 H 0.96696 * 113.99638 * 300.00710 * 11 9 8 37 37 H 1.09000 * 109.47038 * 300.46290 * 12 9 8 38 38 H 1.08996 * 109.47170 * 60.46334 * 12 9 8 39 39 H 1.08998 * 109.47001 * 64.81698 * 14 13 12 40 40 H 1.08994 * 109.47155 * 184.82592 * 14 13 12 41 41 H 1.09007 * 109.46736 * 304.82348 * 14 13 12 42 42 H 1.09004 * 109.47220 * 310.00146 * 15 13 12 43 43 H 1.08997 * 109.47154 * 70.00262 * 15 13 12 44 44 H 0.97006 * 119.99502 * 180.02562 * 19 18 16 45 45 H 1.09009 * 109.49995 * 182.39973 * 24 5 4 46 46 H 1.09000 * 109.50960 * 62.28615 * 24 5 4 47 47 H 1.09005 * 109.46504 * 299.17045 * 25 24 5 48 48 H 1.09004 * 109.45583 * 179.19103 * 25 24 5 49 49 H 1.09005 * 109.47002 * 56.04715 * 27 26 25 50 50 H 1.09004 * 109.46989 * 176.04341 * 27 26 25 51 51 H 1.09002 * 109.47443 * 296.04547 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5709 -0.7361 -1.2356 6 1 3.9456 0.2870 -1.2672 7 7 4.0654 -1.4778 -2.4032 8 6 5.4236 -1.0487 -2.7627 9 6 5.9031 -1.8411 -3.9806 10 1 5.2309 -1.6602 -4.8194 11 8 5.9110 -3.2356 -3.6686 12 6 7.3174 -1.3938 -4.3554 13 7 7.7736 -2.1467 -5.5314 14 6 9.2378 -2.1108 -5.6442 15 6 7.1388 -1.6441 -6.7571 16 6 7.4337 -2.5840 -7.8975 17 1 8.0332 -3.4663 -7.7287 18 6 6.9391 -2.3171 -9.1565 19 7 6.2095 -1.2424 -9.3621 20 14 7.3054 -3.4819 -10.5703 21 1 8.1413 -4.6073 -10.0805 22 1 6.0308 -4.0128 -11.1171 23 1 8.0355 -2.7513 -11.6371 24 6 4.0547 -1.4188 0.0467 25 6 3.4864 -0.6777 1.2591 26 7 2.0192 -0.6918 1.1994 27 6 1.4373 -0.1106 2.4166 28 1 -0.3634 0.5143 0.8898 29 1 -0.3634 0.5135 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.6895 -0.1982 -2.1399 32 1 1.6658 -1.7447 -1.2583 33 1 3.4364 -1.3807 -3.1861 34 1 5.4175 0.0149 -3.0012 35 1 6.0957 -1.2291 -1.9239 36 1 6.4892 -3.4700 -2.9299 37 1 7.3125 -0.3284 -4.5856 38 1 7.9914 -1.5819 -3.5198 39 1 9.6805 -2.6290 -4.7935 40 1 9.5432 -2.6020 -6.5680 41 1 9.5761 -1.0746 -5.6546 42 1 6.0608 -1.5805 -6.6082 43 1 7.5322 -0.6548 -6.9907 44 1 5.8613 -1.0548 -10.2479 45 1 5.1439 -1.3948 0.0831 46 1 3.7124 -2.4536 0.0595 47 1 3.8403 0.3533 1.2532 48 1 3.8174 -1.1701 2.1735 49 1 1.8278 0.8968 2.5607 50 1 0.3526 -0.0690 2.3166 51 1 1.6996 -0.7283 3.2755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574749853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:17:03 Heat of formation + Delta-G solvation = -69.515465 kcal Electronic energy + Delta-G solvation = -25173.083775 eV Core-core repulsion = 21719.960235 eV Total energy + Delta-G solvation = -3453.123540 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 299.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.52525 -39.38485 -37.44418 -36.30752 -34.60177 -33.37677 -32.93197 -30.64753 -29.30273 -28.23343 -27.19494 -26.24371 -24.99381 -23.85535 -22.86717 -21.85085 -21.48420 -20.64287 -18.60560 -17.61105 -16.93472 -16.88963 -16.59519 -16.44435 -16.24112 -15.87607 -15.65761 -15.53674 -15.18513 -15.02641 -14.55954 -14.38877 -13.97120 -13.82684 -13.66964 -13.32723 -13.12784 -12.95231 -12.86865 -12.83464 -12.74518 -12.56837 -12.55684 -12.50128 -12.29367 -12.14383 -11.97800 -11.83960 -11.55622 -11.48582 -11.29400 -11.22089 -10.62741 -10.60682 -9.35541 -9.25916 -8.94103 -8.21050 -6.30072 1.39530 1.41043 1.54557 2.40219 2.88321 2.96297 3.11633 3.40965 3.70388 3.78749 3.88136 3.94463 4.03326 4.14244 4.24285 4.29788 4.33776 4.41241 4.45594 4.52677 4.53942 4.56799 4.60592 4.62513 4.68686 4.75474 4.77711 4.81533 4.88094 4.91189 4.99134 5.06914 5.08143 5.09658 5.13053 5.22197 5.24262 5.29604 5.31445 5.43919 5.65185 6.05609 6.10928 6.16050 6.17948 6.34123 6.38015 6.65320 6.86072 7.15283 7.39248 8.90387 Molecular weight = 299.23amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.002552 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.992909 B =10970.225193 C =11671.338618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.035 0.965 4 C -0.110 4.110 5 C 0.089 3.911 6 H 0.035 0.965 7 N -0.680 5.680 8 C 0.044 3.956 9 C 0.128 3.872 10 H 0.058 0.942 11 O -0.550 6.550 12 C 0.027 3.973 13 N -0.542 5.542 14 C 0.039 3.961 15 C 0.209 3.791 16 C -0.521 4.521 17 H 0.061 0.939 18 C -0.001 4.001 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.277 1.277 24 C -0.098 4.098 25 C 0.059 3.941 26 N -0.550 5.550 27 C 0.019 3.981 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.339 0.661 34 H 0.035 0.965 35 H 0.091 0.909 36 H 0.377 0.623 37 H 0.025 0.975 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.012 0.988 42 H 0.003 0.997 43 H -0.042 1.042 44 H 0.264 0.736 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.030 0.970 48 H 0.086 0.914 49 H 0.025 0.975 50 H 0.081 0.919 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.036 4.448 24.301 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 H 0.053 0.947 4 C -0.148 4.148 5 C -0.021 4.021 6 H 0.053 0.947 7 N -0.311 5.311 8 C -0.086 4.086 9 C 0.068 3.932 10 H 0.076 0.924 11 O -0.355 6.355 12 C -0.102 4.102 13 N -0.266 5.266 14 C -0.109 4.109 15 C 0.083 3.917 16 C -0.559 4.559 17 H 0.079 0.921 18 C -0.199 4.199 19 N -0.576 5.576 20 Si 0.794 3.206 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.202 1.202 24 C -0.136 4.136 25 C -0.069 4.069 26 N -0.275 5.275 27 C -0.129 4.129 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.157 0.843 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.225 0.775 37 H 0.044 0.956 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.030 0.970 42 H 0.021 0.979 43 H -0.024 1.024 44 H 0.073 0.927 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.049 0.951 48 H 0.104 0.896 49 H 0.044 0.956 50 H 0.099 0.901 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.611 3.005 24.074 25.427 hybrid contribution 0.773 2.430 -1.213 2.824 sum -6.839 5.435 22.861 24.473 Atomic orbital electron populations 1.21916 0.93150 1.02683 1.02530 1.21556 0.96273 0.94685 0.89836 0.94719 1.21771 0.94054 1.01761 0.97226 1.21593 0.94783 0.94443 0.91276 0.94731 1.60403 1.02949 1.59064 1.08678 1.22547 0.91731 0.96530 0.97794 1.21623 0.94492 0.82013 0.95122 0.92367 1.86633 1.69635 1.23112 1.56116 1.22791 0.97815 0.95181 0.94449 1.61929 1.06897 1.54709 1.03099 1.22248 0.87578 0.98756 1.02341 1.19381 0.93145 0.91993 0.87193 1.21506 1.32067 1.08661 0.93662 0.92106 1.25923 0.94951 0.97208 1.01773 1.70090 1.36399 1.27858 1.23268 0.85337 0.78113 0.78802 0.78394 1.18795 1.20439 1.20218 1.21512 0.99882 1.00006 0.92209 1.22091 0.87045 0.98694 0.99075 1.61968 1.07446 1.55426 1.02666 1.22507 1.01009 0.97471 0.91904 0.91276 0.91593 0.92094 0.91400 0.91119 0.84293 0.94698 0.89108 0.77535 0.95641 0.88595 0.90029 0.92671 0.96979 0.97874 1.02402 0.92736 0.91342 0.91616 0.95138 0.89603 0.95649 0.90081 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.79 71.98 0.63 -1.35 16 2 C 0.09 1.41 2.44 44.94 0.11 1.52 16 3 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 4 C -0.11 -2.09 4.64 30.65 0.14 -1.95 16 5 C 0.09 1.80 2.56 45.00 0.12 1.92 16 6 H 0.03 0.72 7.81 -2.39 -0.02 0.70 16 7 N -0.68 -16.66 6.18 -491.14 -3.03 -19.70 16 8 C 0.04 1.09 5.15 86.30 0.44 1.54 16 9 C 0.13 4.23 3.24 30.60 0.10 4.33 16 10 H 0.06 2.39 6.78 -2.39 -0.02 2.38 16 11 O -0.55 -19.00 13.08 -148.98 -1.95 -20.95 16 12 C 0.03 0.92 4.66 86.31 0.40 1.32 16 13 N -0.54 -23.83 4.56 -927.05 -4.22 -28.06 16 14 C 0.04 1.50 9.37 127.69 1.20 2.70 16 15 C 0.21 11.48 4.55 85.56 0.39 11.87 16 16 C -0.52 -30.54 8.39 25.60 0.21 -30.33 16 17 H 0.06 3.53 7.16 -2.91 -0.02 3.51 16 18 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 19 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 20 Si 0.97 45.55 29.54 68.60 2.03 47.57 16 21 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 C -0.10 -1.82 5.58 30.65 0.17 -1.65 16 25 C 0.06 0.95 5.46 86.32 0.47 1.42 16 26 N -0.55 -9.09 4.75 -897.14 -4.26 -13.35 16 27 C 0.02 0.23 9.30 127.69 1.19 1.42 16 28 H 0.07 0.78 6.15 -2.38 -0.01 0.76 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.34 8.89 8.37 -89.70 -0.75 8.14 16 34 H 0.03 0.86 8.06 -2.39 -0.02 0.84 16 35 H 0.09 1.91 7.49 -2.39 -0.02 1.89 16 36 H 0.38 9.81 9.05 -74.06 -0.67 9.14 16 37 H 0.03 0.90 8.00 -2.39 -0.02 0.88 16 38 H 0.10 2.60 7.94 -2.39 -0.02 2.58 16 39 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.05 2.34 6.66 -2.39 -0.02 2.33 16 41 H 0.01 0.44 8.13 -2.38 -0.02 0.42 16 42 H 0.00 0.19 6.63 -2.38 -0.02 0.18 16 43 H -0.04 -2.47 8.12 -2.39 -0.02 -2.49 16 44 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 45 H 0.07 1.20 7.52 -2.38 -0.02 1.19 16 46 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 48 H 0.09 1.20 8.12 -2.39 -0.02 1.18 16 49 H 0.02 0.30 8.14 -2.38 -0.02 0.28 16 50 H 0.08 0.88 5.75 -2.39 -0.01 0.87 16 51 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -68.66 389.76 -5.65 -74.31 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -0.53 Total: 24.20 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 6.04 Total: -6.84 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -11.23 Total: -118.30 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -1.95 Total: -20.95 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -68.66 -5.65 -74.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574749853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.790 kcal (2) G-P(sol) polarization free energy of solvation -68.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds